Wall clock time and date at job start Fri Apr 10 2020 21:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47302 * 2 1 4 4 N 1.46501 * 109.47086 * 180.02562 * 3 2 1 5 5 C 1.37096 * 119.99865 * 264.75192 * 4 3 2 6 6 H 1.08005 * 120.00034 * 146.17297 * 5 4 3 7 7 C 1.38948 * 120.00068 * 326.16770 * 5 4 3 8 8 N 1.31413 * 120.00235 * 337.67574 * 7 5 4 9 9 Si 1.86803 * 120.00042 * 157.67585 * 7 5 4 10 10 H 1.48495 * 109.47041 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47100 * 120.00377 * 9 7 5 12 12 H 1.48497 * 109.47158 * 240.00133 * 9 7 5 13 13 C 1.34770 * 119.99884 * 84.75127 * 4 3 2 14 14 O 1.21291 * 119.99853 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00260 * 359.97438 * 13 4 3 16 16 O 1.42903 * 109.47463 * 180.02562 * 15 13 4 17 17 C 1.35895 * 116.99949 * 180.02562 * 16 15 13 18 18 C 1.38753 * 120.06081 * 359.97438 * 17 16 15 19 19 C 1.38122 * 119.94560 * 179.97438 * 18 17 16 20 20 C 1.38285 * 120.05625 * 359.97438 * 19 18 17 21 21 C 1.38247 * 120.11206 * 0.02562 * 20 19 18 22 22 C 1.38160 * 120.05608 * 359.97376 * 21 20 19 23 23 C 1.50702 * 120.02875 * 179.97438 * 22 21 20 24 24 C 1.53001 * 109.47206 * 300.00334 * 23 22 21 25 25 C 1.53000 * 109.46959 * 60.00296 * 23 22 21 26 26 H 1.08998 * 109.47210 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47264 * 299.99996 * 1 2 3 28 28 H 1.09005 * 109.47135 * 59.99649 * 1 2 3 29 29 H 1.09003 * 109.47084 * 240.00379 * 2 1 3 30 30 H 1.08995 * 109.47249 * 120.00516 * 2 1 3 31 31 H 1.09003 * 109.46741 * 60.00169 * 3 2 1 32 32 H 1.09002 * 109.46854 * 300.00020 * 3 2 1 33 33 H 0.96999 * 120.00556 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47603 * 59.99624 * 15 13 4 35 35 H 1.08998 * 109.47166 * 299.99860 * 15 13 4 36 36 H 1.07997 * 120.02658 * 0.25291 * 18 17 16 37 37 H 1.08001 * 119.97160 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.94483 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.97245 * 179.97438 * 21 20 19 40 40 H 1.09004 * 109.46880 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47207 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.46646 * 299.99812 * 24 23 22 43 43 H 1.08993 * 109.46994 * 59.99577 * 24 23 22 44 44 H 1.08993 * 109.47441 * 59.99730 * 25 23 22 45 45 H 1.08996 * 109.47113 * 180.02562 * 25 23 22 46 46 H 1.09005 * 109.46703 * 299.99986 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5509 1.1814 6 1 5.1340 1.0396 1.3074 7 6 3.6732 2.3186 2.2173 8 7 2.8019 3.2681 1.9595 9 14 4.2155 2.0013 3.9765 10 1 5.1968 0.8870 3.9986 11 1 4.8464 3.2270 4.5288 12 1 3.0347 1.6381 4.8006 13 6 4.1784 1.3359 -1.1632 14 8 5.3913 1.3363 -1.1637 15 6 3.4244 1.2161 -2.4624 16 8 4.3525 1.1164 -3.5445 17 6 3.8325 1.0017 -4.7947 18 6 2.4570 0.9849 -4.9766 19 6 1.9311 0.8688 -6.2484 20 6 2.7741 0.7698 -7.3402 21 6 4.1449 0.7863 -7.1617 22 6 4.6760 0.9023 -5.8915 23 6 6.1704 0.9196 -5.6976 24 6 6.7689 -0.3837 -6.2306 25 6 6.7696 2.1044 -6.4580 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 2.4401 3.8038 2.6827 34 1 2.7973 2.0968 -2.6012 35 1 2.7981 0.3244 -2.4382 36 1 1.7983 1.0671 -4.1248 37 1 0.8605 0.8553 -6.3904 38 1 2.3609 0.6787 -8.3338 39 1 4.8012 0.7084 -8.0159 40 1 6.3979 1.0171 -4.6361 41 1 7.8497 -0.3714 -6.0899 42 1 6.3420 -1.2278 -5.6889 43 1 6.5413 -0.4807 -7.2921 44 1 6.3432 3.0329 -6.0784 45 1 7.8505 2.1167 -6.3181 46 1 6.5420 2.0074 -7.5196 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516643175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:46 Heat of formation + Delta-G solvation = -59.836999 kcal Electronic energy + Delta-G solvation = -25556.580122 eV Core-core repulsion = 22025.291815 eV Total energy + Delta-G solvation = -3531.288307 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.24165 -38.68555 -37.10063 -35.28446 -35.20616 -32.87133 -31.31226 -30.04090 -29.79354 -27.86170 -27.02554 -25.81254 -24.39095 -23.32514 -21.97917 -21.07116 -20.03508 -19.08876 -17.93617 -16.90249 -16.15121 -15.87352 -15.78570 -15.33214 -14.81499 -14.50735 -14.26311 -13.88675 -13.79786 -13.77068 -13.71727 -13.18166 -13.05671 -12.64807 -12.31882 -12.18760 -11.95441 -11.83530 -11.72123 -11.56289 -11.50146 -11.35380 -11.04633 -11.03427 -10.85800 -10.63762 -10.47441 -10.39386 -10.34595 -10.27466 -10.00434 -9.02458 -8.75603 -8.46016 -7.94160 -7.57541 -6.40156 -4.01436 1.40380 1.56800 3.11706 3.21573 3.26599 3.38158 3.76233 3.85587 4.15163 4.73765 4.77632 4.89619 4.97208 5.07956 5.20534 5.22341 5.34622 5.39169 5.41954 5.48640 5.55961 5.63188 5.66037 5.70080 5.70956 5.75175 5.90367 5.92054 5.95525 6.10205 6.12288 6.17830 6.28506 6.32218 6.37206 6.38368 6.49318 6.51915 6.58299 6.72970 6.82471 6.90343 7.18939 7.54107 7.64602 8.16468 8.43598 9.10511 9.30705 9.89799 10.63646 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.003837 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.973727 B = 7294.970234 C = 8392.781132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.097 3.903 4 N -0.435 5.435 5 C -0.306 4.306 6 H 0.095 0.905 7 C 0.036 3.964 8 N -0.868 5.868 9 Si 0.919 3.081 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.458 3.542 14 O -0.560 6.560 15 C 0.047 3.953 16 O -0.283 6.283 17 C 0.139 3.861 18 C -0.211 4.211 19 C -0.085 4.085 20 C -0.166 4.166 21 C -0.080 4.080 22 C -0.108 4.108 23 C -0.057 4.057 24 C -0.139 4.139 25 C -0.139 4.139 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.045 0.955 33 H 0.268 0.732 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 -4.844 -14.277 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.027 4.027 4 N -0.156 5.156 5 C -0.433 4.433 6 H 0.113 0.887 7 C -0.168 4.168 8 N -0.506 5.506 9 Si 0.745 3.255 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.205 1.205 13 C 0.245 3.755 14 O -0.442 6.442 15 C -0.031 4.031 16 O -0.195 6.195 17 C 0.092 3.908 18 C -0.230 4.230 19 C -0.103 4.103 20 C -0.184 4.184 21 C -0.098 4.098 22 C -0.109 4.109 23 C -0.076 4.076 24 C -0.196 4.196 25 C -0.197 4.197 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.443 -4.686 -14.079 15.232 hybrid contribution -0.443 0.004 0.870 0.977 sum -3.886 -4.682 -13.209 14.543 Atomic orbital electron populations 1.21677 0.96140 1.00818 1.01642 1.21999 0.95074 0.99148 1.01826 1.21756 0.81871 0.94662 1.04401 1.43428 1.04645 1.63200 1.04301 1.19525 1.07061 1.28589 0.88149 0.88741 1.25345 0.97245 0.93543 1.00630 1.69922 1.30873 1.16838 1.32946 0.85990 0.78675 0.78733 0.82095 1.19077 1.20696 1.20518 1.19790 0.88192 0.83662 0.83885 1.90561 1.13621 1.53768 1.86246 1.22739 0.92069 1.01862 0.86448 1.86184 1.34728 1.86833 1.11760 1.19026 0.91605 0.94925 0.85214 1.21305 0.93967 1.08914 0.98813 1.20876 0.99513 0.97969 0.91946 1.20945 0.93447 1.05429 0.98589 1.20764 0.94969 0.98386 0.95682 1.19229 0.95301 1.05462 0.90883 1.20013 0.89853 0.95358 1.02346 1.21818 1.00402 0.96972 1.00431 1.21821 1.00407 0.97928 0.99508 0.93321 0.92577 0.93195 0.93357 0.91395 0.86386 0.93632 0.92154 0.90379 0.90638 0.85441 0.86143 0.86353 0.85825 0.88811 0.92511 0.92660 0.92984 0.92589 0.92506 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.91 37.16 0.37 -1.65 16 2 C -0.14 -2.46 6.17 -26.73 -0.16 -2.63 16 3 C 0.10 2.03 4.72 -4.04 -0.02 2.01 16 4 N -0.44 -10.87 2.56 -114.81 -0.29 -11.17 16 5 C -0.31 -8.36 8.98 -14.93 -0.13 -8.49 16 6 H 0.09 2.72 7.70 -52.48 -0.40 2.32 16 7 C 0.04 0.94 4.92 -17.47 -0.09 0.86 16 8 N -0.87 -22.77 11.33 55.50 0.63 -22.14 16 9 Si 0.92 20.20 29.61 -169.99 -5.03 15.17 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 13 C 0.46 11.43 7.67 -10.99 -0.08 11.34 16 14 O -0.56 -16.23 16.32 -14.36 -0.23 -16.46 16 15 C 0.05 0.92 3.83 36.00 0.14 1.06 16 16 O -0.28 -5.66 8.44 -39.32 -0.33 -6.00 16 17 C 0.14 2.31 6.66 -39.21 -0.26 2.05 16 18 C -0.21 -3.03 9.04 -39.43 -0.36 -3.38 16 19 C -0.08 -1.03 10.04 -39.61 -0.40 -1.42 16 20 C -0.17 -1.89 10.04 -39.56 -0.40 -2.29 16 21 C -0.08 -0.97 8.71 -39.61 -0.35 -1.32 16 22 C -0.11 -1.59 4.79 -104.47 -0.50 -2.09 16 23 C -0.06 -0.81 3.06 -91.77 -0.28 -1.09 16 24 C -0.14 -1.66 9.01 37.16 0.33 -1.32 16 25 C -0.14 -1.69 9.01 37.16 0.33 -1.35 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.80 6.59 -51.93 -0.34 0.46 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.12 2.73 5.35 -51.93 -0.28 2.45 16 32 H 0.05 0.86 6.66 -51.93 -0.35 0.52 16 33 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 34 H 0.08 1.40 6.93 -51.93 -0.36 1.04 16 35 H 0.08 1.29 6.06 -51.93 -0.31 0.98 16 36 H 0.13 1.69 6.30 -52.49 -0.33 1.36 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.22 7.10 -52.49 -0.37 0.85 16 40 H 0.09 1.63 6.99 -51.93 -0.36 1.27 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.53 7.39 -51.93 -0.38 0.14 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.53 7.39 -51.93 -0.38 0.15 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -31.07 370.14 -8.78 -39.85 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.24 Total: 4.88 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.85 Total: -9.72 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.34 Total: -33.31 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.57 Total: -22.46 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.07 -8.78 -39.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516643175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.988 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds