Wall clock time and date at job start Fri Apr 10 2020 21:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35898 * 117.00021 * 2 1 4 4 C 1.38753 * 120.05591 * 0.25561 * 3 2 1 5 5 C 1.38130 * 119.94079 * 180.31803 * 4 3 2 6 6 C 1.38286 * 120.05561 * 359.68129 * 5 4 3 7 7 C 1.38251 * 120.11174 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05327 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.02472 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47017 * 264.99482 * 9 8 7 11 11 C 1.50700 * 109.47280 * 179.97438 * 10 9 8 12 12 O 1.21284 * 119.99572 * 354.87512 * 11 10 9 13 13 N 1.34773 * 120.00268 * 174.86808 * 11 10 9 14 14 C 1.46505 * 120.00159 * 185.39917 * 13 11 10 15 15 C 1.50696 * 109.46818 * 90.00380 * 14 13 11 16 16 H 1.08000 * 120.00388 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99794 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99819 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00056 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47215 * 89.99779 * 19 17 15 21 21 H 1.48497 * 109.47161 * 210.00147 * 19 17 15 22 22 H 1.48497 * 109.46956 * 329.99919 * 19 17 15 23 23 C 1.46503 * 119.99834 * 5.40205 * 13 11 10 24 24 C 1.53004 * 109.47022 * 124.23996 * 23 13 11 25 25 C 1.52994 * 109.46907 * 244.23879 * 23 13 11 26 26 H 1.09002 * 109.46829 * 300.00114 * 1 2 3 27 27 H 1.08994 * 109.47238 * 59.99833 * 1 2 3 28 28 H 1.08994 * 109.47300 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.03181 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.96900 * 179.70265 * 5 4 3 31 31 H 1.07997 * 119.94512 * 180.02562 * 6 5 4 32 32 H 1.07999 * 119.96860 * 180.02562 * 7 6 5 33 33 H 1.09005 * 109.47007 * 24.99810 * 9 8 7 34 34 H 1.09003 * 109.47102 * 144.99316 * 9 8 7 35 35 H 1.08996 * 109.47543 * 300.00031 * 10 9 8 36 36 H 1.09006 * 109.47108 * 60.00431 * 10 9 8 37 37 H 1.09001 * 109.46983 * 210.00097 * 14 13 11 38 38 H 1.09001 * 109.46820 * 329.99966 * 14 13 11 39 39 H 0.97005 * 120.00212 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47010 * 4.24371 * 23 13 11 41 41 H 1.09002 * 109.46886 * 55.64546 * 24 23 13 42 42 H 1.09003 * 109.47149 * 175.64268 * 24 23 13 43 43 H 1.08996 * 109.47040 * 295.64370 * 24 23 13 44 44 H 1.09001 * 109.47419 * 64.58947 * 25 23 13 45 45 H 1.09006 * 109.47084 * 184.58145 * 25 23 13 46 46 H 1.08999 * 109.47698 * 304.58513 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0054 5 6 1.9210 3.6048 -0.0013 6 6 3.3020 3.6757 -0.0066 7 6 4.0561 2.5170 -0.0059 8 6 3.4312 1.2848 -0.0003 9 6 4.2538 0.0220 0.0000 10 6 4.4213 -0.4778 -1.4363 11 6 5.2444 -1.7401 -1.4362 12 8 5.7344 -2.1444 -0.4030 13 7 5.4359 -2.4199 -2.5840 14 6 6.1347 -3.7074 -2.5651 15 6 5.1355 -4.8183 -2.3689 16 1 4.0851 -4.5883 -2.2680 17 6 5.5624 -6.1283 -2.3172 18 7 4.6904 -7.0977 -2.1455 19 14 7.3792 -6.5261 -2.4910 20 1 8.0165 -6.5260 -1.1498 21 1 7.5354 -7.8654 -3.1132 22 1 8.0301 -5.5032 -3.3484 23 6 4.9454 -1.8712 -3.8508 24 6 6.1045 -1.7665 -4.8441 25 6 3.8661 -2.7930 -4.4219 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 0.2129 2.3204 0.0100 30 1 1.3341 4.5114 -0.0020 31 1 3.7924 4.6379 -0.0114 32 1 5.1345 2.5751 -0.0096 33 1 5.2341 0.2271 0.4301 34 1 3.7490 -0.7403 0.5934 35 1 3.4410 -0.6829 -1.8664 36 1 4.9262 0.2846 -2.0297 37 1 6.6569 -3.8513 -3.5110 38 1 6.8550 -3.7178 -1.7471 39 1 4.9907 -8.0194 -2.1095 40 1 4.5238 -0.8809 -3.6788 41 1 6.5754 -2.7431 -4.9571 42 1 5.7262 -1.4317 -5.8099 43 1 6.8375 -1.0504 -4.4729 44 1 3.0058 -2.8035 -3.7525 45 1 3.5590 -2.4290 -5.4024 46 1 4.2643 -3.8031 -4.5176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522236793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:51 Heat of formation + Delta-G solvation = -56.031833 kcal Electronic energy + Delta-G solvation = -25535.926586 eV Core-core repulsion = 22004.803283 eV Total energy + Delta-G solvation = -3531.123302 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.35887 -39.18825 -37.47985 -36.03913 -33.91661 -32.66673 -30.91923 -30.33079 -29.88900 -27.89480 -27.27872 -26.73174 -24.55251 -22.23893 -22.17389 -21.35276 -20.76775 -18.06046 -17.87047 -16.86555 -16.72181 -16.36083 -15.78954 -15.53391 -15.13157 -14.89005 -14.53515 -14.08770 -13.79133 -13.55614 -13.50407 -13.04630 -13.00018 -12.68431 -12.47998 -12.22442 -12.02988 -11.83540 -11.78320 -11.64859 -11.55970 -11.28311 -11.20721 -10.93564 -10.82525 -10.74584 -10.62457 -10.45648 -10.24841 -10.03563 -9.40671 -9.02509 -8.81269 -8.52631 -8.18556 -7.60435 -6.03270 -4.00139 1.21764 1.35297 3.24070 3.32421 3.38409 3.40920 3.46524 3.64123 3.94441 4.44453 4.64058 4.72135 4.90188 4.96742 5.04475 5.13880 5.22502 5.25223 5.29814 5.36849 5.41677 5.45585 5.52195 5.55534 5.58184 5.68568 5.83068 5.92830 6.03257 6.05482 6.16287 6.25178 6.30770 6.35155 6.38994 6.44744 6.56985 6.58195 6.72832 6.86146 7.04600 7.07324 7.34442 7.47868 7.68772 8.38519 8.54797 9.00834 9.10131 9.58069 11.09963 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018443 B = 0.003640 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.864138 B = 7691.250222 C = 8005.168131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.131 3.869 4 C -0.210 4.210 5 C -0.089 4.089 6 C -0.158 4.158 7 C -0.080 4.080 8 C -0.107 4.107 9 C -0.056 4.056 10 C -0.130 4.130 11 C 0.510 3.490 12 O -0.545 6.545 13 N -0.590 5.590 14 C 0.213 3.787 15 C -0.521 4.521 16 H 0.077 0.923 17 C 0.071 3.929 18 N -0.899 5.899 19 Si 0.873 3.127 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.266 1.266 23 C 0.134 3.866 24 C -0.163 4.163 25 C -0.161 4.161 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.031 0.969 38 H 0.035 0.965 39 H 0.263 0.737 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.160 21.290 -0.891 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.085 3.915 4 C -0.228 4.228 5 C -0.107 4.107 6 C -0.177 4.177 7 C -0.098 4.098 8 C -0.108 4.108 9 C -0.094 4.094 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.423 6.423 13 N -0.322 5.322 14 C 0.092 3.908 15 C -0.560 4.560 16 H 0.095 0.905 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.700 3.300 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.191 1.191 23 C 0.030 3.970 24 C -0.221 4.221 25 C -0.219 4.219 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.120 0.880 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.826 20.651 -0.342 21.460 hybrid contribution 0.435 -0.214 -0.175 0.515 sum -5.391 20.437 -0.517 21.143 Atomic orbital electron populations 1.23069 0.78570 1.04217 1.00935 1.86187 1.21113 1.26444 1.88218 1.18939 0.91918 0.84362 0.96243 1.21216 0.99902 0.92420 1.09296 1.20880 0.94695 0.96784 0.98377 1.21020 0.93902 0.98287 1.04457 1.20955 1.00015 0.90987 0.97842 1.19411 0.90607 0.96175 1.04575 1.20169 0.99409 0.93530 0.96299 1.21620 1.00993 0.96108 0.98263 1.20374 0.81083 0.85159 0.83637 1.90647 1.50406 1.69662 1.31573 1.47996 1.56815 1.21786 1.05606 1.19624 0.93503 0.80486 0.97147 1.21375 0.95405 0.89607 1.49568 0.90510 1.24850 0.97280 0.96239 0.94703 1.69897 1.33860 0.99776 1.50252 0.86896 0.86290 0.77807 0.78976 1.20000 1.21218 1.19126 1.20999 0.94493 0.96873 0.84636 1.22169 0.98601 1.02776 0.98533 1.22192 0.98389 1.02279 0.99040 0.92884 0.92770 0.88020 0.85654 0.86142 0.86095 0.85326 0.90377 0.89812 0.89316 0.89876 0.95154 0.94707 0.92700 0.90485 0.91426 0.92053 0.92944 0.92816 0.93307 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.18 9.64 -19.42 -0.19 -4.37 16 3 C 0.13 1.69 6.66 -39.22 -0.26 1.43 16 4 C -0.21 -2.21 9.04 -39.43 -0.36 -2.57 16 5 C -0.09 -0.85 10.04 -39.60 -0.40 -1.24 16 6 C -0.16 -1.53 10.04 -39.56 -0.40 -1.93 16 7 C -0.08 -0.89 9.68 -39.60 -0.38 -1.27 16 8 C -0.11 -1.41 5.15 -104.47 -0.54 -1.95 16 9 C -0.06 -0.87 4.37 -27.88 -0.12 -0.99 16 10 C -0.13 -2.05 4.01 -27.89 -0.11 -2.16 16 11 C 0.51 10.70 7.65 -10.99 -0.08 10.62 16 12 O -0.54 -13.65 15.54 5.55 0.09 -13.56 16 13 N -0.59 -12.35 2.39 -167.47 -0.40 -12.75 16 14 C 0.21 5.25 3.80 -5.19 -0.02 5.24 16 15 C -0.52 -14.86 8.27 -34.44 -0.28 -15.14 16 16 H 0.08 2.39 7.84 -52.49 -0.41 1.98 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 19 Si 0.87 21.82 27.47 -169.99 -4.67 17.15 16 20 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 23 C 0.13 2.21 3.12 -67.93 -0.21 2.00 16 24 C -0.16 -2.35 9.19 37.16 0.34 -2.01 16 25 C -0.16 -2.76 8.74 37.15 0.32 -2.43 16 26 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 27 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 30 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.08 1.19 7.95 -51.93 -0.41 0.77 16 34 H 0.08 1.48 7.70 -51.93 -0.40 1.08 16 35 H 0.09 1.38 7.85 -51.93 -0.41 0.98 16 36 H 0.08 1.10 7.73 -51.93 -0.40 0.70 16 37 H 0.03 0.72 5.19 -51.93 -0.27 0.45 16 38 H 0.03 0.93 6.78 -51.93 -0.35 0.58 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.08 1.07 5.85 -51.93 -0.30 0.77 16 41 H 0.07 1.10 6.34 -51.93 -0.33 0.77 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.76 6.60 -51.93 -0.34 1.42 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -34.43 369.43 -7.74 -42.17 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.31 Total: 1.97 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -1.61 Total: -9.19 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.37 Total: -39.74 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.10 Total: -17.93 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.43 -7.74 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522236793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.859 kcal (2) G-P(sol) polarization free energy of solvation -34.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds