Wall clock time and date at job start Fri Apr 10 2020 21:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35898 * 117.00021 * 2 1 4 4 C 1.38753 * 120.05591 * 0.25561 * 3 2 1 5 5 C 1.38130 * 119.94079 * 180.31803 * 4 3 2 6 6 C 1.38286 * 120.05561 * 359.68129 * 5 4 3 7 7 C 1.38251 * 120.11174 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05327 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.02472 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47017 * 264.99482 * 9 8 7 11 11 C 1.50700 * 109.47280 * 179.97438 * 10 9 8 12 12 O 1.21284 * 119.99572 * 354.87512 * 11 10 9 13 13 N 1.34773 * 120.00268 * 174.86808 * 11 10 9 14 14 C 1.46505 * 120.00159 * 185.39917 * 13 11 10 15 15 C 1.50696 * 109.46818 * 90.00380 * 14 13 11 16 16 H 1.08000 * 120.00388 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99794 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99819 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00056 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47215 * 89.99779 * 19 17 15 21 21 H 1.48497 * 109.47161 * 210.00147 * 19 17 15 22 22 H 1.48497 * 109.46956 * 329.99919 * 19 17 15 23 23 C 1.46503 * 119.99834 * 5.40205 * 13 11 10 24 24 C 1.53004 * 109.47022 * 124.23996 * 23 13 11 25 25 C 1.52994 * 109.46907 * 244.23879 * 23 13 11 26 26 H 1.09002 * 109.46829 * 300.00114 * 1 2 3 27 27 H 1.08994 * 109.47238 * 59.99833 * 1 2 3 28 28 H 1.08994 * 109.47300 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.03181 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.96900 * 179.70265 * 5 4 3 31 31 H 1.07997 * 119.94512 * 180.02562 * 6 5 4 32 32 H 1.07999 * 119.96860 * 180.02562 * 7 6 5 33 33 H 1.09005 * 109.47007 * 24.99810 * 9 8 7 34 34 H 1.09003 * 109.47102 * 144.99316 * 9 8 7 35 35 H 1.08996 * 109.47543 * 300.00031 * 10 9 8 36 36 H 1.09006 * 109.47108 * 60.00431 * 10 9 8 37 37 H 1.09001 * 109.46983 * 210.00097 * 14 13 11 38 38 H 1.09001 * 109.46820 * 329.99966 * 14 13 11 39 39 H 0.97005 * 120.00212 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47010 * 4.24371 * 23 13 11 41 41 H 1.09002 * 109.46886 * 55.64546 * 24 23 13 42 42 H 1.09003 * 109.47149 * 175.64268 * 24 23 13 43 43 H 1.08996 * 109.47040 * 295.64370 * 24 23 13 44 44 H 1.09001 * 109.47419 * 64.58947 * 25 23 13 45 45 H 1.09006 * 109.47084 * 184.58145 * 25 23 13 46 46 H 1.08999 * 109.47698 * 304.58513 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0054 5 6 1.9210 3.6048 -0.0013 6 6 3.3020 3.6757 -0.0066 7 6 4.0561 2.5170 -0.0059 8 6 3.4312 1.2848 -0.0003 9 6 4.2538 0.0220 0.0000 10 6 4.4213 -0.4778 -1.4363 11 6 5.2444 -1.7401 -1.4362 12 8 5.7344 -2.1444 -0.4030 13 7 5.4359 -2.4199 -2.5840 14 6 6.1347 -3.7074 -2.5651 15 6 5.1355 -4.8183 -2.3689 16 1 4.0851 -4.5883 -2.2680 17 6 5.5624 -6.1283 -2.3172 18 7 4.6904 -7.0977 -2.1455 19 14 7.3792 -6.5261 -2.4910 20 1 8.0165 -6.5260 -1.1498 21 1 7.5354 -7.8654 -3.1132 22 1 8.0301 -5.5032 -3.3484 23 6 4.9454 -1.8712 -3.8508 24 6 6.1045 -1.7665 -4.8441 25 6 3.8661 -2.7930 -4.4219 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 0.2129 2.3204 0.0100 30 1 1.3341 4.5114 -0.0020 31 1 3.7924 4.6379 -0.0114 32 1 5.1345 2.5751 -0.0096 33 1 5.2341 0.2271 0.4301 34 1 3.7490 -0.7403 0.5934 35 1 3.4410 -0.6829 -1.8664 36 1 4.9262 0.2846 -2.0297 37 1 6.6569 -3.8513 -3.5110 38 1 6.8550 -3.7178 -1.7471 39 1 4.9907 -8.0194 -2.1095 40 1 4.5238 -0.8809 -3.6788 41 1 6.5754 -2.7431 -4.9571 42 1 5.7262 -1.4317 -5.8099 43 1 6.8375 -1.0504 -4.4729 44 1 3.0058 -2.8035 -3.7525 45 1 3.5590 -2.4290 -5.4024 46 1 4.2643 -3.8031 -4.5176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522236793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:50 Heat of formation + Delta-G solvation = -77.383405 kcal Electronic energy + Delta-G solvation = -25536.852459 eV Core-core repulsion = 22004.803283 eV Total energy + Delta-G solvation = -3532.049176 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.31524 -40.73466 -38.34064 -37.64251 -35.17312 -34.71946 -32.56784 -31.36658 -30.92432 -29.58638 -28.12475 -28.00082 -25.93423 -23.99456 -22.99760 -22.70208 -21.91850 -19.46942 -19.05962 -18.91308 -18.20769 -17.30289 -16.96257 -16.62011 -16.41498 -16.35093 -15.94492 -15.31139 -15.02019 -14.87507 -14.75534 -14.59213 -14.23625 -13.96308 -13.72842 -13.63067 -13.55643 -13.32938 -12.95730 -12.81627 -12.77720 -12.64893 -12.43829 -12.34465 -12.26843 -12.00391 -11.91390 -11.84822 -11.74641 -11.62360 -11.50065 -10.79568 -10.61998 -9.75334 -9.37694 -9.04975 -8.30850 -6.33107 0.40273 0.54196 1.31004 1.35333 1.43191 1.80822 2.31448 2.33612 2.45573 2.85962 3.02954 3.59228 3.88554 3.95393 3.96765 4.11678 4.20846 4.28202 4.29525 4.33194 4.38384 4.41629 4.52135 4.55060 4.61050 4.72216 4.75324 4.77001 4.87366 4.90204 4.93918 4.98269 5.04564 5.08020 5.09357 5.26246 5.40702 5.46512 5.48817 5.57826 5.59372 5.66137 5.72882 5.94726 6.29412 6.52547 6.67300 6.76176 7.25099 7.45333 8.85895 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018443 B = 0.003640 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.864138 B = 7691.250222 C = 8005.168131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.110 3.890 4 C -0.212 4.212 5 C -0.085 4.085 6 C -0.156 4.156 7 C -0.083 4.083 8 C -0.130 4.130 9 C -0.047 4.047 10 C -0.112 4.112 11 C 0.498 3.502 12 O -0.597 6.597 13 N -0.595 5.595 14 C 0.223 3.777 15 C -0.521 4.521 16 H 0.033 0.967 17 C 0.011 3.989 18 N -0.946 5.946 19 Si 0.941 3.059 20 H -0.279 1.279 21 H -0.275 1.275 22 H -0.240 1.240 23 C 0.126 3.874 24 C -0.157 4.157 25 C -0.155 4.155 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.145 0.855 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.050 0.950 38 H 0.013 0.987 39 H 0.266 0.734 40 H 0.112 0.888 41 H 0.045 0.955 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.089 0.911 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 24.942 -2.619 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.065 3.935 4 C -0.230 4.230 5 C -0.103 4.103 6 C -0.174 4.174 7 C -0.101 4.101 8 C -0.131 4.131 9 C -0.085 4.085 10 C -0.152 4.152 11 C 0.288 3.712 12 O -0.478 6.478 13 N -0.326 5.326 14 C 0.101 3.899 15 C -0.560 4.560 16 H 0.051 0.949 17 C -0.187 4.187 18 N -0.587 5.587 19 Si 0.764 3.236 20 H -0.205 1.205 21 H -0.200 1.200 22 H -0.163 1.163 23 C 0.024 3.976 24 C -0.215 4.215 25 C -0.213 4.213 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.163 0.837 30 H 0.169 0.831 31 H 0.167 0.833 32 H 0.159 0.841 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.138 0.862 37 H 0.067 0.933 38 H 0.031 0.969 39 H 0.075 0.925 40 H 0.129 0.871 41 H 0.064 0.936 42 H 0.115 0.885 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.108 0.892 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.318 24.341 -2.114 25.005 hybrid contribution 0.114 -1.284 0.392 1.347 sum -5.205 23.057 -1.722 23.700 Atomic orbital electron populations 1.23274 0.76861 1.04838 1.02445 1.86138 1.23173 1.27626 1.88622 1.19186 0.92125 0.84904 0.97311 1.21485 1.00909 0.92008 1.08646 1.21314 0.95044 0.97419 0.96493 1.21379 0.94141 0.98855 1.03049 1.21155 1.00921 0.90627 0.97377 1.19303 0.90764 0.95704 1.07321 1.19964 0.99184 0.94019 0.95313 1.21566 1.00163 0.94067 0.99408 1.21366 0.80627 0.86435 0.82769 1.90611 1.52492 1.71329 1.33387 1.48140 1.56381 1.20498 1.07605 1.19266 0.92383 0.81308 0.96943 1.21539 0.94237 0.91255 1.48958 0.94915 1.25781 1.02512 0.96022 0.94382 1.70046 1.36418 1.00344 1.51864 0.85812 0.79977 0.78640 0.79145 1.20464 1.20039 1.16291 1.21407 0.95302 0.97796 0.83103 1.22140 0.97783 1.02052 0.99517 1.22115 0.97790 1.00468 1.00916 0.91375 0.91130 0.88006 0.83735 0.83051 0.83278 0.84053 0.90858 0.93558 0.89013 0.86203 0.93264 0.96871 0.92465 0.87063 0.93601 0.88532 0.91656 0.94804 0.89196 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.34 -9.55 9.64 -92.41 -0.89 -10.44 16 3 C 0.11 2.77 6.66 22.51 0.15 2.92 16 4 C -0.21 -3.97 9.04 22.37 0.20 -3.77 16 5 C -0.08 -1.29 10.04 22.26 0.22 -1.07 16 6 C -0.16 -2.46 10.04 22.28 0.22 -2.23 16 7 C -0.08 -1.66 9.68 22.25 0.22 -1.44 16 8 C -0.13 -3.36 5.15 -19.77 -0.10 -3.46 16 9 C -0.05 -1.49 4.37 29.85 0.13 -1.36 16 10 C -0.11 -3.52 4.01 29.85 0.12 -3.40 16 11 C 0.50 21.41 7.65 87.66 0.67 22.08 16 12 O -0.60 -31.37 15.54 -3.04 -0.05 -31.42 16 13 N -0.60 -25.13 2.39 -802.13 -1.91 -27.04 16 14 C 0.22 11.23 3.80 85.63 0.33 11.55 16 15 C -0.52 -31.13 8.27 25.60 0.21 -30.92 16 16 H 0.03 2.18 7.84 -2.91 -0.02 2.16 16 17 C 0.01 0.63 5.47 84.66 0.46 1.10 16 18 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 19 Si 0.94 45.70 27.47 68.60 1.88 47.59 16 20 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.24 -10.50 6.54 99.48 0.65 -9.85 16 23 C 0.13 3.94 3.12 44.99 0.14 4.08 16 24 C -0.16 -4.04 9.19 71.98 0.66 -3.38 16 25 C -0.15 -5.24 8.74 71.98 0.63 -4.61 16 26 H 0.07 1.00 7.65 -2.39 -0.02 0.98 16 27 H 0.07 1.02 7.67 -2.39 -0.02 1.00 16 28 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.14 2.03 6.30 -2.91 -0.02 2.01 16 30 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 31 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.07 2.31 7.95 -2.38 -0.02 2.30 16 34 H 0.05 1.77 7.70 -2.39 -0.02 1.75 16 35 H 0.09 2.84 7.85 -2.39 -0.02 2.82 16 36 H 0.12 2.86 7.73 -2.38 -0.02 2.84 16 37 H 0.05 2.30 5.19 -2.39 -0.01 2.29 16 38 H 0.01 0.72 6.78 -2.39 -0.02 0.71 16 39 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16 40 H 0.11 2.74 5.85 -2.39 -0.01 2.72 16 41 H 0.04 1.38 6.34 -2.39 -0.02 1.36 16 42 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 46 H 0.04 1.91 6.60 -2.39 -0.02 1.89 16 Total: -1.00 -81.10 369.43 5.61 -75.49 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.90 Total: 18.77 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 5.38 Total: -12.41 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -1.62 Total: -87.58 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.94 Total: -41.86 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.88 Total: 47.59 kcal Total: -81.10 5.61 -75.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522236793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.892 kcal (2) G-P(sol) polarization free energy of solvation -81.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds