Wall clock time and date at job start Fri Apr 10 2020 21:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52990 * 109.47139 * 2 1 4 4 N 1.46502 * 109.47252 * 120.00210 * 2 1 3 5 5 C 1.46501 * 119.99601 * 299.99481 * 4 2 1 6 6 C 1.50698 * 109.47165 * 270.00152 * 5 4 2 7 7 H 1.07993 * 120.00262 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99678 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00332 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00005 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47028 * 89.99958 * 10 8 6 12 12 H 1.48498 * 109.47431 * 210.00353 * 10 8 6 13 13 H 1.48501 * 109.46747 * 330.00376 * 10 8 6 14 14 C 1.34771 * 119.99855 * 119.99983 * 4 2 1 15 15 O 1.21282 * 119.99834 * 180.02562 * 14 4 2 16 16 C 1.50703 * 120.00433 * 359.97438 * 14 4 2 17 17 C 1.52995 * 109.47151 * 180.02562 * 16 14 4 18 18 C 1.53001 * 109.47181 * 180.02562 * 17 16 14 19 19 O 1.42902 * 109.47386 * 180.02562 * 18 17 16 20 20 C 1.35898 * 116.99694 * 180.02562 * 19 18 17 21 21 C 1.38735 * 120.05254 * 179.97438 * 20 19 18 22 22 C 1.38144 * 119.94607 * 179.97438 * 21 20 19 23 23 C 1.38266 * 120.05233 * 0.02562 * 22 21 20 24 24 C 1.38269 * 120.11595 * 359.95530 * 23 22 21 25 25 C 1.38142 * 120.04935 * 0.04230 * 24 23 22 26 26 H 1.09000 * 109.46680 * 299.99963 * 1 2 3 27 27 H 1.08997 * 109.47268 * 59.99779 * 1 2 3 28 28 H 1.09000 * 109.46718 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46680 * 240.00037 * 2 1 3 30 30 H 1.08995 * 109.47456 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47060 * 299.99964 * 3 2 1 32 32 H 1.08998 * 109.47662 * 59.99745 * 3 2 1 33 33 H 1.08997 * 109.47167 * 30.00731 * 5 4 2 34 34 H 1.09005 * 109.46336 * 150.00025 * 5 4 2 35 35 H 0.97001 * 120.00560 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.46805 * 59.99987 * 16 14 4 37 37 H 1.08993 * 109.46945 * 300.00151 * 16 14 4 38 38 H 1.08999 * 109.47370 * 60.00219 * 17 16 14 39 39 H 1.09006 * 109.47017 * 300.00060 * 17 16 14 40 40 H 1.08999 * 109.46920 * 59.99785 * 18 17 16 41 41 H 1.08998 * 109.47220 * 300.00155 * 18 17 16 42 42 H 1.08002 * 120.02704 * 359.70561 * 21 20 19 43 43 H 1.08001 * 119.97447 * 179.97438 * 22 21 20 44 44 H 1.08000 * 119.94089 * 179.97438 * 23 22 21 45 45 H 1.07992 * 119.97577 * 180.02562 * 24 23 22 46 46 H 1.08005 * 120.02748 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6646 -0.1900 2.5267 6 6 2.7033 0.8019 2.9829 7 1 3.5429 1.0363 2.3453 8 6 2.5818 1.4101 4.2143 9 7 1.5598 1.1242 4.9909 10 14 3.8698 2.6391 4.7801 11 1 3.4772 4.0033 4.3446 12 1 3.9721 2.6025 6.2611 13 1 5.1841 2.2884 4.1843 14 6 2.7933 -1.7864 1.0724 15 8 3.1972 -2.3584 2.0626 16 6 3.1569 -2.3016 -0.2963 17 6 4.0361 -3.5458 -0.1560 18 6 4.4057 -4.0685 -1.5456 19 8 5.2264 -5.2310 -1.4145 20 6 5.6456 -5.8230 -2.5637 21 6 6.4456 -6.9552 -2.5103 22 6 6.8700 -7.5555 -3.6799 23 6 6.4985 -7.0286 -4.9030 24 6 5.7009 -5.9005 -4.9590 25 6 5.2739 -5.2966 -3.7922 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.6906 0.2974 2.4844 34 1 1.6240 -1.0227 3.2291 35 1 1.4740 1.5524 5.8571 36 1 3.7016 -1.5310 -0.8417 37 1 2.2484 -2.5587 -0.8409 38 1 3.4909 -4.3163 0.3892 39 1 4.9446 -3.2891 0.3889 40 1 4.9510 -3.2979 -2.0904 41 1 3.4974 -4.3251 -2.0908 42 1 6.7400 -7.3644 -1.5551 43 1 7.4932 -8.4367 -3.6388 44 1 6.8317 -7.4991 -5.8162 45 1 5.4118 -5.4911 -5.9156 46 1 4.6512 -4.4152 -3.8364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523284021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:38:01 Heat of formation + Delta-G solvation = -63.016652 kcal Electronic energy + Delta-G solvation = -24456.569256 eV Core-core repulsion = 20925.143069 eV Total energy + Delta-G solvation = -3531.426187 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.28021 -39.26639 -37.65175 -36.03875 -33.75425 -32.75270 -31.23985 -30.83540 -30.07269 -28.22026 -26.79721 -26.33707 -23.58861 -22.75608 -22.24081 -21.40183 -20.94919 -18.56844 -17.81272 -16.81821 -16.54929 -16.35206 -16.18990 -15.76640 -15.12119 -14.90071 -14.64590 -14.25803 -13.74869 -13.63130 -13.55294 -13.48761 -12.98217 -12.80089 -12.37114 -12.19252 -12.07898 -11.78389 -11.76221 -11.61253 -11.46724 -11.33782 -11.14335 -10.93020 -10.90477 -10.84896 -10.61792 -10.54298 -10.37114 -10.00731 -9.53761 -9.25545 -8.89077 -8.41162 -8.40801 -7.64513 -6.02464 -4.05692 1.08961 1.22142 2.98403 3.29973 3.37086 3.39441 3.45276 3.55794 3.94970 4.45649 4.56118 4.63877 4.82348 4.84754 4.87351 5.02204 5.11106 5.14045 5.23273 5.30946 5.32181 5.37036 5.38680 5.48477 5.56181 5.64828 5.66859 5.76158 5.99231 6.07580 6.12957 6.14955 6.16379 6.25251 6.28060 6.34292 6.35124 6.56026 6.58404 6.94637 7.12093 7.27281 7.48449 7.58130 7.94407 8.26708 8.45471 8.92819 9.11394 9.58398 11.05681 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.002554 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.438168 B =10961.669627 C =11563.782999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.594 5.594 5 C 0.245 3.755 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.059 3.941 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.505 3.495 15 O -0.540 6.540 16 C -0.137 4.137 17 C -0.103 4.103 18 C 0.061 3.939 19 O -0.312 6.312 20 C 0.135 3.865 21 C -0.156 4.156 22 C -0.082 4.082 23 C -0.165 4.165 24 C -0.081 4.081 25 C -0.211 4.211 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.032 -10.714 -21.122 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.326 5.326 5 C 0.126 3.874 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.291 3.709 15 O -0.418 6.418 16 C -0.178 4.178 17 C -0.141 4.141 18 C -0.014 4.014 19 O -0.225 6.225 20 C 0.089 3.911 21 C -0.174 4.174 22 C -0.100 4.100 23 C -0.183 4.183 24 C -0.099 4.099 25 C -0.230 4.230 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.178 -11.000 -20.182 23.362 hybrid contribution 0.531 1.017 0.140 1.156 sum 4.709 -9.983 -20.042 22.881 Atomic orbital electron populations 1.22163 0.95634 1.01771 1.02465 1.20996 0.94081 0.94136 0.87963 1.22143 1.01342 0.95743 1.02315 1.48339 1.49158 1.26430 1.08646 1.19236 0.95866 0.94978 0.77279 1.21427 1.08885 1.23328 1.02044 0.92425 1.24932 0.95768 0.97167 0.96364 1.69928 1.29601 1.43258 1.10692 0.86549 0.82051 0.81208 0.77933 1.20724 1.21166 1.19946 1.20186 0.79305 0.81046 0.90343 1.90685 1.53276 1.58127 1.39724 1.21570 1.00795 0.98051 0.97360 1.21236 1.01390 0.97106 0.94333 1.22915 0.93393 0.85550 0.99552 1.86106 1.65292 1.42406 1.28691 1.19103 0.93965 0.92748 0.85280 1.20508 1.01251 0.96065 0.99595 1.20971 0.98276 0.99035 0.91702 1.21050 1.01430 0.98004 0.97845 1.20955 0.96189 0.95113 0.97651 1.21318 1.06156 1.03340 0.92204 0.91286 0.92300 0.92934 0.90762 0.92763 0.93301 0.90040 0.94821 0.94098 0.92807 0.89309 0.89461 0.90023 0.89912 0.91942 0.91995 0.85151 0.85477 0.86073 0.85896 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.17 37.16 0.34 -1.96 16 2 C 0.13 2.08 3.17 -67.93 -0.22 1.86 16 3 C -0.16 -2.52 8.47 37.15 0.31 -2.20 16 4 N -0.59 -12.17 2.39 -167.47 -0.40 -12.56 16 5 C 0.25 6.27 4.60 -5.19 -0.02 6.25 16 6 C -0.52 -14.31 7.83 -34.44 -0.27 -14.57 16 7 H 0.06 1.59 7.63 -52.49 -0.40 1.19 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -26.44 13.29 55.43 0.74 -25.71 16 10 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 14 C 0.50 10.20 7.67 -10.99 -0.08 10.12 16 15 O -0.54 -13.49 15.56 5.56 0.09 -13.40 16 16 C -0.14 -1.89 4.01 -27.88 -0.11 -2.00 16 17 C -0.10 -1.41 4.87 -26.73 -0.13 -1.54 16 18 C 0.06 0.67 4.74 37.16 0.18 0.85 16 19 O -0.31 -4.05 10.14 -19.42 -0.20 -4.25 16 20 C 0.13 1.57 6.69 -39.22 -0.26 1.31 16 21 C -0.16 -1.63 9.99 -39.43 -0.39 -2.02 16 22 C -0.08 -0.70 10.04 -39.61 -0.40 -1.10 16 23 C -0.17 -1.35 10.04 -39.56 -0.40 -1.75 16 24 C -0.08 -0.69 10.04 -39.61 -0.40 -1.09 16 25 C -0.21 -2.10 9.04 -39.44 -0.36 -2.45 16 26 H 0.07 1.13 6.66 -51.93 -0.35 0.79 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.93 5.77 -51.93 -0.30 0.63 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.56 6.92 -51.93 -0.36 1.20 16 33 H 0.03 0.87 6.43 -51.93 -0.33 0.54 16 34 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.09 1.06 7.79 -51.93 -0.40 0.65 16 37 H 0.09 0.97 7.79 -51.93 -0.40 0.57 16 38 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 40 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 41 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 46 H 0.13 1.07 6.30 -52.48 -0.33 0.74 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -33.23 375.39 -8.86 -42.09 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.42 Total: 0.11 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -2.31 Total: -8.72 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.34 Total: -38.27 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.11 Total: -17.64 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.23 -8.86 -42.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523284021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.928 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds