Wall clock time and date at job start Fri Apr 10 2020 21:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52990 * 109.47139 * 2 1 4 4 N 1.46502 * 109.47252 * 120.00210 * 2 1 3 5 5 C 1.46501 * 119.99601 * 299.99481 * 4 2 1 6 6 C 1.50698 * 109.47165 * 270.00152 * 5 4 2 7 7 H 1.07993 * 120.00262 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99678 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00332 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00005 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47028 * 89.99958 * 10 8 6 12 12 H 1.48498 * 109.47431 * 210.00353 * 10 8 6 13 13 H 1.48501 * 109.46747 * 330.00376 * 10 8 6 14 14 C 1.34771 * 119.99855 * 119.99983 * 4 2 1 15 15 O 1.21282 * 119.99834 * 180.02562 * 14 4 2 16 16 C 1.50703 * 120.00433 * 359.97438 * 14 4 2 17 17 C 1.52995 * 109.47151 * 180.02562 * 16 14 4 18 18 C 1.53001 * 109.47181 * 180.02562 * 17 16 14 19 19 O 1.42902 * 109.47386 * 180.02562 * 18 17 16 20 20 C 1.35898 * 116.99694 * 180.02562 * 19 18 17 21 21 C 1.38735 * 120.05254 * 179.97438 * 20 19 18 22 22 C 1.38144 * 119.94607 * 179.97438 * 21 20 19 23 23 C 1.38266 * 120.05233 * 0.02562 * 22 21 20 24 24 C 1.38269 * 120.11595 * 359.95530 * 23 22 21 25 25 C 1.38142 * 120.04935 * 0.04230 * 24 23 22 26 26 H 1.09000 * 109.46680 * 299.99963 * 1 2 3 27 27 H 1.08997 * 109.47268 * 59.99779 * 1 2 3 28 28 H 1.09000 * 109.46718 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46680 * 240.00037 * 2 1 3 30 30 H 1.08995 * 109.47456 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47060 * 299.99964 * 3 2 1 32 32 H 1.08998 * 109.47662 * 59.99745 * 3 2 1 33 33 H 1.08997 * 109.47167 * 30.00731 * 5 4 2 34 34 H 1.09005 * 109.46336 * 150.00025 * 5 4 2 35 35 H 0.97001 * 120.00560 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.46805 * 59.99987 * 16 14 4 37 37 H 1.08993 * 109.46945 * 300.00151 * 16 14 4 38 38 H 1.08999 * 109.47370 * 60.00219 * 17 16 14 39 39 H 1.09006 * 109.47017 * 300.00060 * 17 16 14 40 40 H 1.08999 * 109.46920 * 59.99785 * 18 17 16 41 41 H 1.08998 * 109.47220 * 300.00155 * 18 17 16 42 42 H 1.08002 * 120.02704 * 359.70561 * 21 20 19 43 43 H 1.08001 * 119.97447 * 179.97438 * 22 21 20 44 44 H 1.08000 * 119.94089 * 179.97438 * 23 22 21 45 45 H 1.07992 * 119.97577 * 180.02562 * 24 23 22 46 46 H 1.08005 * 120.02748 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6646 -0.1900 2.5267 6 6 2.7033 0.8019 2.9829 7 1 3.5429 1.0363 2.3453 8 6 2.5818 1.4101 4.2143 9 7 1.5598 1.1242 4.9909 10 14 3.8698 2.6391 4.7801 11 1 3.4772 4.0033 4.3446 12 1 3.9721 2.6025 6.2611 13 1 5.1841 2.2884 4.1843 14 6 2.7933 -1.7864 1.0724 15 8 3.1972 -2.3584 2.0626 16 6 3.1569 -2.3016 -0.2963 17 6 4.0361 -3.5458 -0.1560 18 6 4.4057 -4.0685 -1.5456 19 8 5.2264 -5.2310 -1.4145 20 6 5.6456 -5.8230 -2.5637 21 6 6.4456 -6.9552 -2.5103 22 6 6.8700 -7.5555 -3.6799 23 6 6.4985 -7.0286 -4.9030 24 6 5.7009 -5.9005 -4.9590 25 6 5.2739 -5.2966 -3.7922 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.6906 0.2974 2.4844 34 1 1.6240 -1.0227 3.2291 35 1 1.4740 1.5524 5.8571 36 1 3.7016 -1.5310 -0.8417 37 1 2.2484 -2.5587 -0.8409 38 1 3.4909 -4.3163 0.3892 39 1 4.9446 -3.2891 0.3889 40 1 4.9510 -3.2979 -2.0904 41 1 3.4974 -4.3251 -2.0908 42 1 6.7400 -7.3644 -1.5551 43 1 7.4932 -8.4367 -3.6388 44 1 6.8317 -7.4991 -5.8162 45 1 5.4118 -5.4911 -5.9156 46 1 4.6512 -4.4152 -3.8364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523284021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:38:00 Heat of formation + Delta-G solvation = -82.563853 kcal Electronic energy + Delta-G solvation = -24457.416886 eV Core-core repulsion = 20925.143069 eV Total energy + Delta-G solvation = -3532.273817 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.11129 -40.77081 -38.42216 -37.58890 -35.13698 -34.61224 -32.39833 -31.91090 -30.87476 -29.81319 -28.05503 -27.71255 -25.09998 -23.85885 -23.18212 -22.58857 -22.05386 -19.64663 -19.00598 -18.60771 -18.18732 -17.38544 -17.00580 -16.82299 -16.58208 -16.28648 -16.01167 -15.28112 -14.94530 -14.84331 -14.81364 -14.30729 -14.22309 -14.04899 -13.86441 -13.48490 -13.33404 -13.25086 -12.99861 -12.82982 -12.75310 -12.50916 -12.42273 -12.39158 -12.30082 -12.18908 -12.08297 -11.68354 -11.59428 -11.56431 -11.49375 -10.61345 -10.55628 -9.91825 -9.40337 -9.13827 -8.19663 -6.31469 0.42799 0.52700 1.34476 1.37672 1.47308 1.86546 2.08519 2.36443 2.55375 2.88489 3.09928 3.61424 3.91338 3.91829 3.96448 4.01797 4.08924 4.24172 4.29891 4.31738 4.39509 4.45027 4.45987 4.53590 4.59201 4.61082 4.78527 4.87807 4.90644 5.04029 5.05398 5.08198 5.12453 5.14422 5.22874 5.25906 5.41412 5.45957 5.51712 5.60231 5.63578 5.65686 5.91053 5.91750 6.11768 6.51037 6.74874 6.86732 7.32151 7.53371 8.87595 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.002554 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.438168 B =10961.669627 C =11563.782999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 C -0.153 4.153 4 N -0.599 5.599 5 C 0.263 3.737 6 C -0.523 4.523 7 H 0.054 0.946 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.961 3.039 11 H -0.263 1.263 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.491 3.509 15 O -0.603 6.603 16 C -0.120 4.120 17 C -0.098 4.098 18 C 0.067 3.933 19 O -0.340 6.340 20 C 0.106 3.894 21 C -0.178 4.178 22 C -0.085 4.085 23 C -0.166 4.166 24 C -0.085 4.085 25 C -0.218 4.218 26 H 0.034 0.966 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.123 0.877 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.040 0.960 33 H 0.025 0.975 34 H -0.011 1.011 35 H 0.264 0.736 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.150 0.850 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.546 -10.185 -25.431 27.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 C -0.211 4.211 4 N -0.330 5.330 5 C 0.141 3.859 6 C -0.562 4.562 7 H 0.072 0.928 8 C -0.195 4.195 9 N -0.572 5.572 10 Si 0.786 3.214 11 H -0.188 1.188 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.280 3.720 15 O -0.485 6.485 16 C -0.160 4.160 17 C -0.136 4.136 18 C -0.007 4.007 19 O -0.255 6.255 20 C 0.061 3.939 21 C -0.197 4.197 22 C -0.103 4.103 23 C -0.184 4.184 24 C -0.103 4.103 25 C -0.237 4.237 26 H 0.053 0.947 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.140 0.860 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.007 0.993 35 H 0.073 0.927 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.143 0.857 43 H 0.167 0.833 44 H 0.165 0.835 45 H 0.167 0.833 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.680 -10.455 -24.551 27.092 hybrid contribution 0.364 0.783 1.427 1.668 sum 5.043 -9.672 -23.124 25.568 Atomic orbital electron populations 1.22134 0.94450 1.02254 1.02706 1.21464 0.95118 0.93998 0.87248 1.22091 1.00696 0.95969 1.02369 1.48402 1.49271 1.26982 1.08302 1.18630 0.95230 0.92514 0.79501 1.21656 1.08940 1.23419 1.02208 0.92798 1.25825 0.97857 0.99209 0.96581 1.70055 1.31430 1.44557 1.11115 0.85505 0.79158 0.79419 0.77290 1.18841 1.20995 1.19871 1.21428 0.77942 0.80160 0.92461 1.90653 1.55444 1.59869 1.42537 1.21541 1.02840 0.98421 0.93157 1.21113 0.99849 0.96738 0.95930 1.22864 0.94604 0.85745 0.97522 1.86048 1.66077 1.43243 1.30087 1.19381 0.95311 0.93614 0.85546 1.20726 1.02033 0.96562 1.00368 1.21285 0.98135 0.99554 0.91319 1.21449 1.00605 0.97770 0.98569 1.21343 0.95616 0.94995 0.98331 1.21559 1.06328 1.03926 0.91847 0.94658 0.88359 0.92373 0.85952 0.93693 0.89075 0.94089 0.95680 0.99329 0.92665 0.86101 0.85399 0.92273 0.92801 0.89949 0.89590 0.85657 0.83303 0.83495 0.83271 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 9.17 71.98 0.66 -3.45 16 2 C 0.12 3.57 3.17 44.99 0.14 3.72 16 3 C -0.15 -4.59 8.47 71.98 0.61 -3.98 16 4 N -0.60 -24.75 2.39 -802.14 -1.91 -26.67 16 5 C 0.26 14.17 4.60 85.63 0.39 14.56 16 6 C -0.52 -30.00 7.83 25.60 0.20 -29.80 16 7 H 0.05 3.06 7.63 -2.91 -0.02 3.03 16 8 C 0.00 0.20 5.46 84.65 0.46 0.67 16 9 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 10 Si 0.96 45.60 29.54 68.60 2.03 47.62 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 13 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 14 C 0.49 20.04 7.67 87.66 0.67 20.71 16 15 O -0.60 -31.88 15.56 -3.04 -0.05 -31.92 16 16 C -0.12 -3.00 4.01 29.85 0.12 -2.88 16 17 C -0.10 -2.65 4.87 30.59 0.15 -2.50 16 18 C 0.07 1.34 4.74 71.98 0.34 1.68 16 19 O -0.34 -8.77 10.14 -92.40 -0.94 -9.71 16 20 C 0.11 2.39 6.69 22.51 0.15 2.54 16 21 C -0.18 -3.69 9.99 22.37 0.22 -3.46 16 22 C -0.09 -1.32 10.04 22.25 0.22 -1.09 16 23 C -0.17 -2.22 10.04 22.28 0.22 -2.00 16 24 C -0.09 -1.18 10.04 22.25 0.22 -0.96 16 25 C -0.22 -3.78 9.04 22.36 0.20 -3.58 16 26 H 0.03 1.15 6.66 -2.39 -0.02 1.13 16 27 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 29 H 0.12 2.40 5.77 -2.39 -0.01 2.39 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.04 1.55 6.92 -2.39 -0.02 1.54 16 33 H 0.03 1.38 6.43 -2.39 -0.02 1.37 16 34 H -0.01 -0.73 7.42 -2.38 -0.02 -0.74 16 35 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.12 2.33 7.79 -2.39 -0.02 2.31 16 37 H 0.13 2.23 7.79 -2.39 -0.02 2.21 16 38 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 39 H 0.05 1.74 8.10 -2.38 -0.02 1.72 16 40 H 0.08 1.31 7.66 -2.39 -0.02 1.29 16 41 H 0.09 1.30 7.66 -2.39 -0.02 1.28 16 42 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 43 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 45 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 46 H 0.14 1.90 6.30 -2.91 -0.02 1.88 16 Total: -1.00 -79.85 375.39 5.36 -74.49 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.95 Total: 12.87 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 5.00 Total: -9.83 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -1.63 Total: -83.52 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -0.98 Total: -41.63 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -79.85 5.36 -74.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523284021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.070 kcal (2) G-P(sol) polarization free energy of solvation -79.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds