Wall clock time and date at job start Fri Apr 10 2020 21:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.34659 * 125.79708 * 264.69277 * 3 2 1 5 5 H 0.96998 * 124.85783 * 359.97438 * 4 3 2 6 6 C 1.36446 * 110.29503 * 179.82351 * 4 3 2 7 7 C 1.34479 * 108.85937 * 0.43800 * 6 4 3 8 8 C 1.36763 * 125.80452 * 84.99315 * 3 2 1 9 9 C 1.47259 * 126.94265 * 0.04249 * 8 3 2 10 10 O 1.21619 * 120.00224 * 359.97438 * 9 8 3 11 11 N 1.34784 * 120.00051 * 179.97438 * 9 8 3 12 12 C 1.46504 * 119.99873 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46793 * 34.99693 * 12 11 9 14 14 C 1.52995 * 109.47181 * 274.99759 * 12 11 9 15 15 C 1.53001 * 109.47434 * 180.02562 * 14 12 11 16 16 C 1.53008 * 109.46926 * 59.99722 * 15 14 12 17 17 C 1.52997 * 109.46947 * 300.00238 * 16 15 14 18 18 H 1.08994 * 109.47494 * 299.99952 * 17 16 15 19 19 N 1.46508 * 109.46687 * 179.97438 * 17 16 15 20 20 C 1.36933 * 119.99899 * 85.00390 * 19 17 16 21 21 H 1.08001 * 119.99755 * 359.97438 * 20 19 17 22 22 C 1.38810 * 119.99844 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00221 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99853 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46920 * 59.99938 * 24 22 20 26 26 H 1.48501 * 109.47158 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47376 * 300.00177 * 24 22 20 28 28 C 1.53000 * 109.46989 * 154.99357 * 12 11 9 29 29 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 30 30 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 33 33 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 34 34 H 1.08009 * 125.57361 * 180.15905 * 6 4 3 35 35 H 1.08004 * 126.84021 * 179.75679 * 7 6 4 36 36 H 0.96998 * 120.00188 * 359.97438 * 11 9 8 37 37 H 1.09000 * 109.47040 * 300.00445 * 14 12 11 38 38 H 1.09003 * 109.46949 * 60.00023 * 14 12 11 39 39 H 1.08990 * 109.47431 * 179.97438 * 15 14 12 40 40 H 1.08994 * 109.46878 * 300.00159 * 15 14 12 41 41 H 1.09000 * 109.46740 * 60.00135 * 16 15 14 42 42 H 1.08996 * 109.46885 * 180.02562 * 16 15 14 43 43 H 0.97004 * 119.99736 * 264.99595 * 19 17 16 44 44 H 0.96998 * 119.99695 * 180.02562 * 23 22 20 45 45 H 1.08990 * 109.47471 * 300.00202 * 28 12 11 46 46 H 1.09007 * 109.46833 * 60.00144 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3902 2.1297 -1.0875 5 1 2.3632 1.7984 -1.9988 6 6 2.7930 3.3819 -0.7248 7 6 2.7089 3.4952 0.6126 8 6 2.2078 2.2074 1.1049 9 6 1.9474 1.8362 2.5060 10 8 1.5302 0.7256 2.7734 11 7 2.1713 2.7274 3.4920 12 6 1.9116 2.3583 4.8858 13 1 2.1531 1.3058 5.0340 14 6 0.4346 2.5930 5.2089 15 6 0.1635 2.2082 6.6646 16 6 1.0303 3.0659 7.5888 17 6 2.5072 2.8311 7.2657 18 1 2.7489 1.7788 7.4143 19 7 3.3371 3.6529 8.1503 20 6 3.6722 3.1941 9.3962 21 1 3.3244 2.2266 9.7269 22 6 4.4590 3.9724 10.2340 23 7 4.8825 5.1517 9.8311 24 14 4.9155 3.3468 11.9339 25 1 5.6746 2.0767 11.8065 26 1 5.7558 4.3580 12.6244 27 1 3.6797 3.1079 12.7219 28 6 2.7784 3.2155 5.8104 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5137 0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 3.1292 4.1543 -1.4008 35 1 2.9599 4.3619 1.2061 36 1 2.5043 3.6131 3.2789 37 1 0.1931 3.6455 5.0606 38 1 -0.1828 1.9823 4.5502 39 1 -0.8885 2.3758 6.8949 40 1 0.4051 1.1558 6.8132 41 1 0.7887 4.1183 7.4401 42 1 0.8375 2.7914 8.6259 43 1 3.6493 4.5220 7.8532 44 1 5.4325 5.6954 10.4165 45 1 3.8305 3.0483 5.5803 46 1 2.5368 4.2681 5.6622 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981059310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:25 Heat of formation + Delta-G solvation = -7.595162 kcal Electronic energy + Delta-G solvation = -24989.326312 eV Core-core repulsion = 21492.596132 eV Total energy + Delta-G solvation = -3496.730179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.45912 -39.41003 -37.64636 -34.60977 -33.77969 -33.14985 -31.33962 -31.02869 -29.16798 -28.38441 -27.63915 -24.10910 -23.61198 -22.71034 -21.76307 -21.04270 -20.40928 -19.86678 -18.96296 -17.84883 -17.03202 -16.09996 -15.83467 -15.14373 -14.74690 -14.45899 -14.35682 -14.24741 -13.97260 -13.67334 -13.58368 -13.36170 -13.29344 -13.03182 -12.59692 -12.56355 -12.27734 -12.03457 -11.95675 -11.59150 -11.12882 -10.94252 -10.83426 -10.79970 -10.63301 -10.26586 -10.19984 -10.09032 -9.93756 -9.61309 -9.45438 -9.06669 -8.83999 -8.72911 -8.35108 -6.91028 -5.72322 -3.00519 1.67581 2.24790 2.89147 3.47428 3.51403 3.52362 3.55432 3.64383 4.50996 4.62733 4.73908 4.85181 5.00919 5.13177 5.17146 5.22657 5.27950 5.35812 5.44283 5.57576 5.62615 5.66510 5.70753 5.78646 5.81245 5.86750 5.98252 6.05180 6.06813 6.08539 6.14210 6.23792 6.41149 6.48374 6.56299 6.61070 6.64774 6.73564 6.79721 6.84943 7.04724 7.19844 7.20621 7.74712 7.81336 8.46698 8.52240 9.57634 10.15747 10.50659 11.50502 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024311 B = 0.002755 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.483114 B =10160.161949 C =10718.107125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C 0.106 3.894 4 N -0.554 5.554 5 H 0.414 0.586 6 C -0.020 4.020 7 C -0.167 4.167 8 C -0.231 4.231 9 C 0.589 3.411 10 O -0.552 6.552 11 N -0.720 5.720 12 C 0.151 3.849 13 H 0.086 0.914 14 C -0.123 4.123 15 C -0.114 4.114 16 C -0.136 4.136 17 C 0.183 3.817 18 H 0.048 0.952 19 N -0.725 5.725 20 C -0.236 4.236 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 C -0.129 4.129 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.168 0.832 35 H 0.145 0.855 36 H 0.397 0.603 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.068 0.932 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.831 -5.068 -24.858 26.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 C -0.012 4.012 4 N -0.149 5.149 5 H 0.250 0.750 6 C -0.147 4.147 7 C -0.192 4.192 8 C -0.241 4.241 9 C 0.378 3.622 10 O -0.431 6.431 11 N -0.369 5.369 12 C 0.047 3.953 13 H 0.104 0.896 14 C -0.162 4.162 15 C -0.153 4.153 16 C -0.177 4.177 17 C 0.073 3.927 18 H 0.066 0.934 19 N -0.365 5.365 20 C -0.367 4.367 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.168 4.168 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.083 0.917 34 H 0.185 0.815 35 H 0.163 0.837 36 H 0.231 0.769 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.051 -5.947 -24.604 26.561 hybrid contribution 0.608 0.612 0.299 0.913 sum -7.443 -5.335 -24.305 25.973 Atomic orbital electron populations 1.21648 0.94020 1.02013 1.02063 1.20289 0.96726 0.89114 1.03887 1.20349 1.00247 0.94822 0.85770 1.41590 1.52477 1.12067 1.08776 0.74970 1.21705 1.08414 0.87954 0.96606 1.22079 1.05870 0.97441 0.93785 1.20214 1.15423 0.95955 0.92470 1.17332 0.76810 0.84158 0.83932 1.90725 1.46911 1.21317 1.84170 1.45928 1.67581 1.16756 1.06630 1.20967 0.94779 1.00421 0.79146 0.89554 1.21874 0.95977 1.01256 0.97044 1.21485 0.99368 1.00281 0.94176 1.22281 0.97356 0.99059 0.98957 1.20091 0.89728 0.95373 0.87512 0.93399 1.42404 1.59566 1.20096 1.14419 1.19210 1.25314 1.00998 0.91180 0.91213 1.24726 1.00916 0.96754 0.98655 1.69649 1.40580 1.11287 1.36828 0.86285 0.78005 0.77573 0.84438 1.21299 1.21764 1.21302 1.22074 0.99390 0.99370 0.95959 0.91543 0.93546 0.92063 0.87721 0.91721 0.81453 0.83687 0.76859 0.92215 0.92199 0.92646 0.92218 0.92712 0.91999 0.78347 0.93542 0.91378 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.90 37.16 0.37 -0.88 16 2 C -0.06 -0.57 5.79 -27.88 -0.16 -0.74 16 3 C 0.11 1.08 6.43 -81.89 -0.53 0.56 16 4 N -0.55 -4.01 5.90 -9.11 -0.05 -4.07 16 5 H 0.41 1.63 8.96 -40.82 -0.37 1.27 16 6 C -0.02 -0.15 11.89 -16.83 -0.20 -0.35 16 7 C -0.17 -1.63 10.56 -37.50 -0.40 -2.02 16 8 C -0.23 -2.80 6.29 -103.35 -0.65 -3.45 16 9 C 0.59 8.51 7.77 -12.59 -0.10 8.41 16 10 O -0.55 -9.33 14.42 5.26 0.08 -9.25 16 11 N -0.72 -9.61 5.07 -54.93 -0.28 -9.89 16 12 C 0.15 2.27 2.46 -67.93 -0.17 2.10 16 13 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 14 C -0.12 -1.77 5.49 -26.73 -0.15 -1.91 16 15 C -0.11 -1.72 5.92 -26.73 -0.16 -1.88 16 16 C -0.14 -2.47 5.50 -26.73 -0.15 -2.62 16 17 C 0.18 3.66 2.77 -67.95 -0.19 3.48 16 18 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 19 N -0.72 -18.18 5.12 -53.45 -0.27 -18.46 16 20 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 24 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 C -0.13 -2.14 4.85 -26.76 -0.13 -2.27 16 29 H 0.07 0.75 7.97 -51.93 -0.41 0.34 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.10 1.21 6.75 -51.93 -0.35 0.86 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.17 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.15 1.17 7.70 -52.48 -0.40 0.77 16 36 H 0.40 4.51 7.73 -40.82 -0.32 4.19 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 44 H 0.25 7.50 8.31 -40.82 -0.34 7.17 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -33.19 371.81 -9.67 -42.86 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -7.60 Total: 12.07 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -2.85 Total: -8.83 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.12 Total: -60.04 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.19 -9.67 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981059310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.264 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds