Wall clock time and date at job start Fri Apr 10 2020 21:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 N 1.46499 * 109.47198 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99665 * 180.27868 * 4 3 2 6 6 O 1.21593 * 120.00264 * 359.72086 * 5 4 3 7 7 C 1.47541 * 119.99728 * 179.72391 * 5 4 3 8 8 C 1.40351 * 120.47387 * 179.97438 * 7 5 4 9 9 C 1.36860 * 118.49132 * 180.02562 * 8 7 5 10 10 C 1.39395 * 119.37949 * 359.97438 * 9 8 7 11 11 N 1.38455 * 119.54044 * 179.97438 * 10 9 8 12 12 C 1.46503 * 119.99831 * 359.97438 * 11 10 9 13 13 C 1.52996 * 109.46955 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47026 * 299.99705 * 13 12 11 15 15 C 1.52998 * 109.47711 * 59.99905 * 13 12 11 16 16 C 1.50703 * 109.47028 * 179.97438 * 13 12 11 17 17 H 1.08002 * 119.99893 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00225 * 179.97438 * 16 13 12 19 19 N 1.31513 * 119.99765 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00271 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47353 * 59.99704 * 20 18 16 22 22 H 1.48497 * 109.47402 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46916 * 300.00013 * 20 18 16 24 24 N 1.32608 * 120.92090 * 0.02562 * 10 9 8 25 25 C 1.31672 * 121.63729 * 359.70030 * 24 10 9 26 26 H 1.09007 * 109.47288 * 60.00489 * 1 2 3 27 27 H 1.09004 * 109.46774 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47672 * 299.99669 * 1 2 3 29 29 H 1.08995 * 109.47672 * 240.00331 * 2 1 3 30 30 H 1.09006 * 109.46819 * 119.99760 * 2 1 3 31 31 H 1.09009 * 109.46730 * 59.99606 * 3 2 1 32 32 H 1.08998 * 109.46846 * 300.00150 * 3 2 1 33 33 H 0.97001 * 119.99790 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.75443 * 359.97438 * 8 7 5 35 35 H 1.07994 * 120.30807 * 179.97438 * 9 8 7 36 36 H 0.96997 * 120.00182 * 180.02562 * 11 10 9 37 37 H 1.09002 * 109.47062 * 300.00053 * 12 11 10 38 38 H 1.08997 * 109.46930 * 59.99807 * 12 11 10 39 39 H 1.08993 * 109.46876 * 60.00780 * 14 13 12 40 40 H 1.09005 * 109.46673 * 180.02562 * 14 13 12 41 41 H 1.08998 * 109.47017 * 300.00108 * 14 13 12 42 42 H 1.09002 * 109.47009 * 59.99850 * 15 13 12 43 43 H 1.08998 * 109.47797 * 179.97438 * 15 13 12 44 44 H 1.08997 * 109.47071 * 300.00625 * 15 13 12 45 45 H 0.97006 * 119.99879 * 180.02562 * 19 18 16 46 46 H 1.08005 * 119.74440 * 180.29020 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1787 2.6099 0.0064 6 8 3.5707 3.6629 0.0060 7 6 5.6541 2.6099 0.0132 8 6 6.3658 3.8196 0.0187 9 6 7.7336 3.7722 0.0244 10 6 8.3751 2.5347 0.0250 11 7 9.7586 2.4829 0.0302 12 6 10.5380 3.7234 0.0344 13 6 12.0307 3.3879 0.0390 14 6 12.3658 2.5708 1.2885 15 6 12.3745 2.5738 -1.2100 16 6 12.8324 4.6639 0.0427 17 1 12.3277 5.6188 0.0414 18 6 14.2103 4.6125 0.0477 19 7 14.8248 3.4498 0.0489 20 14 15.2040 6.1942 0.0530 21 1 14.8701 6.9846 1.2650 22 1 16.6529 5.8686 0.0574 23 1 14.8791 6.9869 -1.1600 24 7 7.6787 1.4062 0.0197 25 6 6.3619 1.4072 0.0196 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.8934 -0.5137 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6765 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9899 0.6025 0.0013 34 1 5.8460 4.7662 0.0177 35 1 8.3105 4.6852 0.0283 36 1 10.2119 1.6254 0.0303 37 1 10.2996 4.3053 -0.8560 38 1 10.2928 4.3035 0.9240 39 1 11.7861 1.6479 1.2853 40 1 13.4294 2.3322 1.2920 41 1 12.1210 3.1508 2.1783 42 1 12.1357 3.1559 -2.1001 43 1 13.4380 2.3351 -1.2069 44 1 11.7946 1.6509 -1.2131 45 1 15.7942 3.4136 0.0528 46 1 5.8254 0.4698 0.0199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413398708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:07 Heat of formation + Delta-G solvation = -16.002246 kcal Electronic energy + Delta-G solvation = -24194.677535 eV Core-core repulsion = 20697.582797 eV Total energy + Delta-G solvation = -3497.094738 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.50780 -39.16319 -37.07279 -35.98807 -34.21473 -32.90989 -32.36658 -31.32277 -29.43038 -26.53288 -25.81224 -25.79644 -25.01556 -23.24137 -22.89248 -21.94995 -20.53108 -18.84689 -18.08130 -17.30998 -16.70698 -16.03156 -15.86272 -15.69842 -14.95125 -14.78836 -14.67327 -14.27801 -14.07785 -13.84389 -13.30514 -13.17162 -12.96525 -12.82653 -12.68325 -12.62043 -12.39130 -12.14104 -11.57765 -11.51992 -11.27905 -11.26504 -10.98803 -10.79447 -10.53824 -10.26303 -10.12926 -10.02512 -9.77787 -9.52332 -9.48741 -9.27528 -9.24692 -8.89332 -8.46126 -7.44228 -6.09552 -4.21049 1.03306 1.50209 3.00733 3.05204 3.24398 3.29767 3.31341 3.49573 4.10521 4.32885 4.43365 4.58553 4.61475 4.78014 4.90428 4.99525 5.17192 5.18893 5.23772 5.25295 5.34722 5.42904 5.61747 5.73426 5.79469 5.81761 5.91830 6.07397 6.10317 6.24792 6.31089 6.36509 6.56767 6.66378 6.77461 6.87095 6.92024 7.15638 7.32557 7.38198 7.47248 7.60844 7.86660 7.92348 8.04192 8.17814 8.26170 8.34335 8.78694 9.45306 10.91716 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.040663 B = 0.002244 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.415197 B =12475.849198 C =12957.289978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.120 3.880 4 N -0.735 5.735 5 C 0.576 3.424 6 O -0.550 6.550 7 C -0.282 4.282 8 C 0.027 3.973 9 C -0.249 4.249 10 C 0.432 3.568 11 N -0.692 5.692 12 C 0.129 3.871 13 C 0.058 3.942 14 C -0.132 4.132 15 C -0.132 4.132 16 C -0.510 4.510 17 H 0.057 0.943 18 C 0.067 3.933 19 N -0.883 5.883 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 N -0.558 5.558 25 C 0.194 3.806 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.398 0.602 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.407 0.593 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.008 0.992 40 H 0.086 0.914 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.086 0.914 44 H 0.008 0.992 45 H 0.262 0.738 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.460 -7.260 -0.058 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C -0.004 4.004 4 N -0.388 5.388 5 C 0.365 3.635 6 O -0.429 6.429 7 C -0.291 4.291 8 C 0.001 3.999 9 C -0.274 4.274 10 C 0.193 3.807 11 N -0.318 5.318 12 C 0.006 3.994 13 C 0.058 3.942 14 C -0.190 4.190 15 C -0.190 4.190 16 C -0.549 4.549 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.521 5.521 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 N -0.277 5.277 25 C 0.031 3.969 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.233 0.767 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.245 0.755 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.027 0.973 40 H 0.105 0.895 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.105 0.895 44 H 0.027 0.973 45 H 0.072 0.928 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.048 -7.140 -0.062 21.281 hybrid contribution 0.548 0.842 0.005 1.005 sum -19.500 -6.298 -0.058 20.491 Atomic orbital electron populations 1.21676 0.94585 1.02128 1.02341 1.21752 0.96979 0.95944 1.02842 1.21370 0.79579 0.97003 1.02437 1.45900 1.07207 1.08686 1.76990 1.18033 0.86982 0.83335 0.75160 1.90746 1.70135 1.31246 1.50731 1.20313 0.93085 0.95549 1.20185 1.21046 0.92908 0.97776 0.88167 1.21199 0.95002 0.98026 1.13208 1.18759 0.86246 0.89158 0.86566 1.45248 1.01055 1.11464 1.74000 1.21975 0.93646 0.83614 1.00116 1.18336 0.87100 0.95711 0.93096 1.21838 1.03667 0.96087 0.97384 1.21838 1.03670 0.96088 0.97374 1.20885 0.90984 0.91364 1.51631 0.92455 1.24884 0.97743 0.96185 0.94650 1.69794 1.08947 1.23424 1.49970 0.86615 0.78947 0.83525 0.78663 1.20256 1.21277 1.20261 1.67269 1.08313 1.29084 1.23005 1.22447 0.88934 0.96269 0.89223 0.92350 0.92202 0.92345 0.91217 0.91221 0.91541 0.91527 0.76656 0.84329 0.84279 0.75550 0.92460 0.92449 0.97311 0.89503 0.95406 0.95409 0.89503 0.97318 0.92820 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.14 -0.74 6.05 -26.73 -0.16 -0.90 16 3 C 0.12 0.98 5.67 -4.04 -0.02 0.95 16 4 N -0.74 -6.87 5.51 -61.34 -0.34 -7.21 16 5 C 0.58 7.59 7.77 -12.47 -0.10 7.49 16 6 O -0.55 -9.10 16.41 5.28 0.09 -9.02 16 7 C -0.28 -3.77 5.89 -104.82 -0.62 -4.39 16 8 C 0.03 0.38 9.65 -39.29 -0.38 0.00 16 9 C -0.25 -3.75 9.25 -39.65 -0.37 -4.11 16 10 C 0.43 7.04 7.64 -155.28 -1.19 5.86 16 11 N -0.69 -11.90 5.11 -60.45 -0.31 -12.21 16 12 C 0.13 2.43 3.70 -4.04 -0.01 2.42 16 13 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 14 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 15 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 16 C -0.51 -12.65 8.01 -34.44 -0.28 -12.93 16 17 H 0.06 1.40 7.74 -52.49 -0.41 1.00 16 18 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 19 N -0.88 -22.98 9.35 55.43 0.52 -22.46 16 20 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 N -0.56 -8.57 10.38 -12.14 -0.13 -8.70 16 25 C 0.19 2.43 10.71 -17.13 -0.18 2.24 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.40 2.69 6.52 -40.82 -0.27 2.42 16 34 H 0.14 1.85 7.73 -52.49 -0.41 1.44 16 35 H 0.14 2.00 6.66 -52.49 -0.35 1.65 16 36 H 0.41 7.10 6.28 -40.82 -0.26 6.85 16 37 H 0.06 1.07 7.91 -51.93 -0.41 0.66 16 38 H 0.06 1.07 7.91 -51.93 -0.41 0.66 16 39 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 40 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 44 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 45 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 46 H 0.15 1.27 6.41 -52.48 -0.34 0.93 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -28.32 368.30 -9.27 -37.58 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.12 Total: 7.53 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -2.51 Total: -6.11 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.25 Total: -50.58 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.32 -9.27 -37.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413398708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.582 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds