Wall clock time and date at job start Fri Apr 10 2020 21:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 N 1.46499 * 109.47198 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99665 * 180.27868 * 4 3 2 6 6 O 1.21593 * 120.00264 * 359.72086 * 5 4 3 7 7 C 1.47541 * 119.99728 * 179.72391 * 5 4 3 8 8 C 1.40351 * 120.47387 * 179.97438 * 7 5 4 9 9 C 1.36860 * 118.49132 * 180.02562 * 8 7 5 10 10 C 1.39395 * 119.37949 * 359.97438 * 9 8 7 11 11 N 1.38455 * 119.54044 * 179.97438 * 10 9 8 12 12 C 1.46503 * 119.99831 * 359.97438 * 11 10 9 13 13 C 1.52996 * 109.46955 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47026 * 299.99705 * 13 12 11 15 15 C 1.52998 * 109.47711 * 59.99905 * 13 12 11 16 16 C 1.50703 * 109.47028 * 179.97438 * 13 12 11 17 17 H 1.08002 * 119.99893 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00225 * 179.97438 * 16 13 12 19 19 N 1.31513 * 119.99765 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00271 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47353 * 59.99704 * 20 18 16 22 22 H 1.48497 * 109.47402 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46916 * 300.00013 * 20 18 16 24 24 N 1.32608 * 120.92090 * 0.02562 * 10 9 8 25 25 C 1.31672 * 121.63729 * 359.70030 * 24 10 9 26 26 H 1.09007 * 109.47288 * 60.00489 * 1 2 3 27 27 H 1.09004 * 109.46774 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47672 * 299.99669 * 1 2 3 29 29 H 1.08995 * 109.47672 * 240.00331 * 2 1 3 30 30 H 1.09006 * 109.46819 * 119.99760 * 2 1 3 31 31 H 1.09009 * 109.46730 * 59.99606 * 3 2 1 32 32 H 1.08998 * 109.46846 * 300.00150 * 3 2 1 33 33 H 0.97001 * 119.99790 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.75443 * 359.97438 * 8 7 5 35 35 H 1.07994 * 120.30807 * 179.97438 * 9 8 7 36 36 H 0.96997 * 120.00182 * 180.02562 * 11 10 9 37 37 H 1.09002 * 109.47062 * 300.00053 * 12 11 10 38 38 H 1.08997 * 109.46930 * 59.99807 * 12 11 10 39 39 H 1.08993 * 109.46876 * 60.00780 * 14 13 12 40 40 H 1.09005 * 109.46673 * 180.02562 * 14 13 12 41 41 H 1.08998 * 109.47017 * 300.00108 * 14 13 12 42 42 H 1.09002 * 109.47009 * 59.99850 * 15 13 12 43 43 H 1.08998 * 109.47797 * 179.97438 * 15 13 12 44 44 H 1.08997 * 109.47071 * 300.00625 * 15 13 12 45 45 H 0.97006 * 119.99879 * 180.02562 * 19 18 16 46 46 H 1.08005 * 119.74440 * 180.29020 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1787 2.6099 0.0064 6 8 3.5707 3.6629 0.0060 7 6 5.6541 2.6099 0.0132 8 6 6.3658 3.8196 0.0187 9 6 7.7336 3.7722 0.0244 10 6 8.3751 2.5347 0.0250 11 7 9.7586 2.4829 0.0302 12 6 10.5380 3.7234 0.0344 13 6 12.0307 3.3879 0.0390 14 6 12.3658 2.5708 1.2885 15 6 12.3745 2.5738 -1.2100 16 6 12.8324 4.6639 0.0427 17 1 12.3277 5.6188 0.0414 18 6 14.2103 4.6125 0.0477 19 7 14.8248 3.4498 0.0489 20 14 15.2040 6.1942 0.0530 21 1 14.8701 6.9846 1.2650 22 1 16.6529 5.8686 0.0574 23 1 14.8791 6.9869 -1.1600 24 7 7.6787 1.4062 0.0197 25 6 6.3619 1.4072 0.0196 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.8934 -0.5137 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6765 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9899 0.6025 0.0013 34 1 5.8460 4.7662 0.0177 35 1 8.3105 4.6852 0.0283 36 1 10.2119 1.6254 0.0303 37 1 10.2996 4.3053 -0.8560 38 1 10.2928 4.3035 0.9240 39 1 11.7861 1.6479 1.2853 40 1 13.4294 2.3322 1.2920 41 1 12.1210 3.1508 2.1783 42 1 12.1357 3.1559 -2.1001 43 1 13.4380 2.3351 -1.2069 44 1 11.7946 1.6509 -1.2131 45 1 15.7942 3.4136 0.0528 46 1 5.8254 0.4698 0.0199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413398708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:06 Heat of formation + Delta-G solvation = -32.105447 kcal Electronic energy + Delta-G solvation = -24195.375822 eV Core-core repulsion = 20697.582797 eV Total energy + Delta-G solvation = -3497.793025 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61353 -40.25060 -38.60284 -36.76160 -35.71090 -33.72460 -33.52171 -32.94676 -30.60865 -27.60634 -27.58320 -27.27372 -26.50008 -24.39783 -24.00834 -22.53077 -21.58454 -20.50983 -19.22141 -18.45559 -17.86930 -17.61248 -16.78508 -16.72515 -16.50046 -15.88746 -15.83965 -15.34172 -15.31376 -15.16099 -14.59286 -14.48309 -14.10820 -14.04484 -13.74431 -13.47805 -13.41411 -13.24529 -13.08229 -12.89139 -12.73601 -12.61228 -12.31071 -12.12053 -11.99718 -11.71422 -11.58234 -11.26063 -11.17229 -11.13818 -10.82051 -10.71949 -10.41230 -10.37343 -10.11602 -8.67864 -8.01223 -6.17497 -0.08209 0.38810 1.45679 1.47464 1.52974 1.92786 2.17918 2.22153 2.48904 2.98983 3.23055 3.55151 3.85263 3.90042 3.97768 4.06381 4.12433 4.20362 4.38180 4.41376 4.50586 4.67896 4.70938 4.74753 4.79072 4.89319 4.92093 4.96674 5.04883 5.12290 5.18369 5.18591 5.22519 5.28741 5.35879 5.41201 5.49901 5.53614 5.65062 5.67950 5.95498 6.11654 6.20909 6.41716 6.54830 6.60526 6.87942 7.10364 7.23910 7.50679 8.97633 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.040663 B = 0.002244 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.415197 B =12475.849198 C =12957.289978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.117 3.883 4 N -0.717 5.717 5 C 0.574 3.426 6 O -0.589 6.589 7 C -0.280 4.280 8 C 0.022 3.978 9 C -0.256 4.256 10 C 0.419 3.581 11 N -0.697 5.697 12 C 0.147 3.853 13 C 0.051 3.949 14 C -0.121 4.121 15 C -0.121 4.121 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.025 3.975 19 N -0.902 5.902 20 Si 0.946 3.054 21 H -0.275 1.275 22 H -0.289 1.289 23 H -0.275 1.275 24 N -0.570 5.570 25 C 0.200 3.800 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.413 0.587 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.405 0.595 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.028 0.972 40 H 0.059 0.941 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.059 0.941 44 H 0.028 0.972 45 H 0.259 0.741 46 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.246 -8.401 -0.062 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.006 4.006 4 N -0.369 5.369 5 C 0.363 3.637 6 O -0.471 6.471 7 C -0.289 4.289 8 C -0.003 4.003 9 C -0.281 4.281 10 C 0.181 3.819 11 N -0.324 5.324 12 C 0.024 3.976 13 C 0.050 3.950 14 C -0.179 4.179 15 C -0.179 4.179 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.175 4.175 19 N -0.540 5.540 20 Si 0.773 3.227 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.201 1.201 24 N -0.288 5.288 25 C 0.039 3.961 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.251 0.749 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.242 0.758 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.078 0.922 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -21.872 -8.326 -0.067 23.403 hybrid contribution 0.948 1.146 0.005 1.487 sum -20.923 -7.180 -0.062 22.121 Atomic orbital electron populations 1.21693 0.94182 1.02782 1.02191 1.21709 0.97217 0.93855 1.03830 1.21490 0.78586 0.98948 1.01597 1.45804 1.07871 1.08234 1.75002 1.18041 0.86844 0.83773 0.75022 1.90734 1.70697 1.32836 1.52784 1.20473 0.93441 0.95698 1.19294 1.21191 0.92723 0.98592 0.87839 1.21233 0.95364 0.97841 1.13660 1.18858 0.85853 0.89910 0.87326 1.44977 1.01473 1.10476 1.75498 1.21567 0.91709 0.84270 1.00081 1.18344 0.89011 0.94676 0.92955 1.21672 1.02123 0.96910 0.97190 1.21672 1.02129 0.96909 0.97179 1.21236 0.91492 0.92450 1.51033 0.92685 1.25504 0.98776 0.98393 0.94842 1.69927 1.08771 1.24642 1.50706 0.85802 0.77589 0.80785 0.78529 1.20069 1.21434 1.20083 1.67314 1.09431 1.28741 1.23319 1.23047 0.88065 0.97597 0.87424 0.92557 0.91120 0.92552 0.90196 0.90197 0.92446 0.92427 0.74870 0.83941 0.84133 0.75795 0.92545 0.92525 0.95329 0.92181 0.95913 0.95921 0.92181 0.95338 0.93182 0.79125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 71.98 0.71 -0.41 16 2 C -0.13 -1.02 6.05 30.59 0.19 -0.84 16 3 C 0.12 1.69 5.67 86.38 0.49 2.18 16 4 N -0.72 -11.57 5.51 -466.25 -2.57 -14.14 16 5 C 0.57 14.15 7.77 86.70 0.67 14.82 16 6 O -0.59 -19.07 16.41 -4.01 -0.07 -19.14 16 7 C -0.28 -6.95 5.89 -19.99 -0.12 -7.07 16 8 C 0.02 0.61 9.65 22.46 0.22 0.83 16 9 C -0.26 -7.46 9.25 22.23 0.21 -7.26 16 10 C 0.42 13.08 7.64 133.25 1.02 14.10 16 11 N -0.70 -23.25 5.11 -345.17 -1.76 -25.01 16 12 C 0.15 5.45 3.70 86.38 0.32 5.77 16 13 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 14 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 15 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 16 C -0.52 -26.03 8.01 25.60 0.21 -25.83 16 17 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 18 C 0.02 1.25 5.15 84.66 0.44 1.69 16 19 N -0.90 -47.57 9.35 21.45 0.20 -47.37 16 20 Si 0.95 41.28 29.54 68.60 2.03 43.31 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 24 N -0.57 -16.24 10.38 -192.33 -2.00 -18.23 16 25 C 0.20 4.44 10.71 85.04 0.91 5.35 16 26 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 27 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.41 4.05 6.52 -92.71 -0.60 3.44 16 34 H 0.14 3.73 7.73 -2.91 -0.02 3.71 16 35 H 0.14 3.97 6.66 -2.91 -0.02 3.95 16 36 H 0.40 13.63 6.28 -92.71 -0.58 13.04 16 37 H 0.06 2.08 7.91 -2.39 -0.02 2.06 16 38 H 0.06 2.08 7.91 -2.39 -0.02 2.06 16 39 H 0.03 1.10 6.86 -2.39 -0.02 1.08 16 40 H 0.06 2.97 6.07 -2.38 -0.01 2.96 16 41 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 2.97 6.07 -2.39 -0.01 2.96 16 44 H 0.03 1.10 6.86 -2.39 -0.02 1.08 16 45 H 0.26 13.28 8.31 -92.70 -0.77 12.51 16 46 H 0.19 2.42 6.41 -2.91 -0.02 2.40 16 Total: -1.00 -60.75 368.30 2.03 -58.72 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: -0.19 Total: 25.79 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 6.39 Total: -3.93 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -6.13 Total: -104.75 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.07 Total: -19.14 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -60.75 2.03 -58.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413398708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.613 kcal (2) G-P(sol) polarization free energy of solvation -60.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds