Wall clock time and date at job start Fri Apr 10 2020 21:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46485 * 2 1 4 4 N 1.46495 * 109.47102 * 240.00667 * 2 1 3 5 5 C 1.34771 * 120.00463 * 84.99814 * 4 2 1 6 6 O 1.21587 * 119.99857 * 359.97438 * 5 4 2 7 7 N 1.34784 * 120.00282 * 180.02562 * 5 4 2 8 8 C 1.46493 * 120.00155 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47203 * 179.97438 * 8 7 5 10 10 C 1.50695 * 109.47063 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00776 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00031 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00276 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99688 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47398 * 89.99895 * 14 12 10 16 16 H 1.48501 * 109.46780 * 209.99633 * 14 12 10 17 17 H 1.48498 * 109.47112 * 329.99298 * 14 12 10 18 18 C 1.50696 * 109.47472 * 120.00026 * 2 1 3 19 19 C 1.38288 * 119.92554 * 260.00599 * 18 2 1 20 20 C 1.38100 * 120.07490 * 179.97438 * 19 18 2 21 21 C 1.38914 * 119.92399 * 359.97438 * 20 19 18 22 22 N 1.39675 * 120.07712 * 179.97438 * 21 20 19 23 23 C 1.46507 * 119.99622 * 0.02562 * 22 21 20 24 24 C 1.46498 * 120.00353 * 179.72315 * 22 21 20 25 25 C 1.38915 * 119.85317 * 0.25647 * 21 20 19 26 26 C 1.38104 * 119.92020 * 359.48918 * 25 21 20 27 27 H 1.09002 * 109.47411 * 59.99735 * 1 2 3 28 28 H 1.09004 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47123 * 299.99361 * 1 2 3 30 30 H 0.97005 * 119.99670 * 264.99254 * 4 2 1 31 31 H 0.97003 * 119.99503 * 359.97438 * 7 5 4 32 32 H 1.09004 * 109.46709 * 299.99484 * 8 7 5 33 33 H 1.09001 * 109.47542 * 59.99079 * 8 7 5 34 34 H 1.08997 * 109.47282 * 300.00136 * 9 8 7 35 35 H 1.09006 * 109.47136 * 59.99885 * 9 8 7 36 36 H 0.96991 * 119.99772 * 180.02562 * 13 12 10 37 37 H 1.08000 * 119.96699 * 359.95344 * 19 18 2 38 38 H 1.07999 * 120.04149 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.47091 * 90.00293 * 23 22 21 40 40 H 1.09004 * 109.46622 * 209.99851 * 23 22 21 41 41 H 1.08997 * 109.47201 * 329.99553 * 23 22 21 42 42 H 1.09001 * 109.46777 * 60.00310 * 24 22 21 43 43 H 1.08996 * 109.47313 * 179.97438 * 24 22 21 44 44 H 1.08998 * 109.47521 * 300.00365 * 24 22 21 45 45 H 1.07991 * 120.04046 * 179.72622 * 25 21 20 46 46 H 1.07995 * 119.96395 * 180.25137 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6904 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 8 1.8574 1.1615 -2.4118 7 7 2.5958 -0.6535 -3.4578 8 6 2.7362 0.0775 -4.7195 9 6 3.2605 -0.8687 -5.8015 10 6 3.4043 -0.1168 -7.0996 11 1 3.1479 0.9312 -7.1480 12 6 3.8643 -0.7666 -8.2253 13 7 3.9894 -0.1106 -9.3583 14 14 4.3085 -2.5791 -8.1415 15 1 3.1114 -3.3975 -8.4614 16 1 5.3843 -2.8709 -9.1228 17 1 4.7832 -2.9097 -6.7738 18 6 2.0324 -0.7104 1.2304 19 6 2.4585 0.0213 2.3238 20 6 2.9190 -0.6266 3.4531 21 6 2.9534 -2.0148 3.4902 22 7 3.4190 -2.6733 4.6305 23 6 3.8714 -1.8998 5.7896 24 6 3.4489 -4.1374 4.6701 25 6 2.5291 -2.7466 2.3883 26 6 2.0649 -2.0925 1.2641 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 2.2491 -1.6316 -1.1527 31 1 2.8265 -1.5947 -3.4142 32 1 1.7658 0.4722 -5.0206 33 1 3.4379 0.9010 -4.5863 34 1 4.2309 -1.2631 -5.5002 35 1 2.5591 -1.6923 -5.9349 36 1 4.3127 -0.5679 -10.1503 37 1 2.4314 1.1005 2.2944 38 1 3.2520 -0.0546 4.3066 39 1 3.0295 -1.7218 6.4587 40 1 4.6446 -2.4568 6.3188 41 1 4.2767 -0.9453 5.4538 42 1 4.0901 -4.5094 3.8710 43 1 3.8402 -4.4670 5.6326 44 1 2.4391 -4.5253 4.5360 45 1 2.5587 -3.8259 2.4122 46 1 1.7311 -2.6608 0.4086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773439708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:17 Heat of formation + Delta-G solvation = -1.541977 kcal Electronic energy + Delta-G solvation = -24015.596635 eV Core-core repulsion = 20519.128941 eV Total energy + Delta-G solvation = -3496.467694 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.28733 -39.40267 -37.19790 -35.22024 -34.45433 -32.78636 -31.52551 -31.23192 -29.71943 -28.86418 -28.55441 -25.41398 -24.73796 -22.82100 -22.54504 -20.83432 -20.61418 -20.06522 -18.34431 -17.52090 -16.84987 -16.35461 -15.80251 -15.47901 -15.17982 -15.12430 -14.66509 -14.30725 -14.10003 -13.81580 -13.71941 -13.58567 -13.49050 -13.19373 -13.09468 -12.70533 -12.56414 -12.43581 -12.41818 -12.31777 -11.78404 -11.43204 -11.16558 -11.13768 -10.89595 -10.34103 -10.19899 -10.03655 -9.93073 -9.67705 -9.27948 -9.14253 -8.98734 -8.58965 -8.31125 -7.56213 -6.07357 -4.06952 1.22349 1.31137 2.74494 3.07951 3.27897 3.35375 3.37012 3.59419 3.68004 4.41038 4.50018 4.55287 4.61095 4.66224 4.75040 4.80472 4.88778 5.12696 5.17792 5.22388 5.23950 5.25601 5.25741 5.34088 5.42775 5.51782 5.68953 5.77577 5.88578 6.02335 6.10039 6.16300 6.25235 6.31180 6.43682 6.58755 6.64053 6.76517 6.87719 6.89778 7.12256 7.15922 7.30191 7.38289 7.71969 8.38367 8.51062 8.97194 9.01503 9.52925 11.05727 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.002360 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.972474 B =11862.753209 C =12746.183872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.209 3.791 3 H 0.092 0.908 4 N -0.747 5.747 5 C 0.700 3.300 6 O -0.595 6.595 7 N -0.743 5.743 8 C 0.149 3.851 9 C -0.022 4.022 10 C -0.521 4.521 11 H 0.076 0.924 12 C 0.068 3.932 13 N -0.899 5.899 14 Si 0.883 3.117 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.266 1.266 18 C -0.143 4.143 19 C -0.059 4.059 20 C -0.194 4.194 21 C 0.210 3.790 22 N -0.641 5.641 23 C 0.093 3.907 24 C 0.097 3.903 25 C -0.191 4.191 26 C -0.064 4.064 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.391 0.609 31 H 0.391 0.609 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.021 0.979 35 H 0.017 0.983 36 H 0.264 0.736 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.120 0.880 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 -8.558 32.675 33.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.104 3.896 3 H 0.110 0.890 4 N -0.404 5.404 5 C 0.400 3.600 6 O -0.473 6.473 7 N -0.397 5.397 8 C 0.026 3.974 9 C -0.060 4.060 10 C -0.559 4.559 11 H 0.094 0.906 12 C -0.134 4.134 13 N -0.537 5.537 14 Si 0.710 3.290 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.191 1.191 18 C -0.146 4.146 19 C -0.078 4.078 20 C -0.216 4.216 21 C 0.109 3.891 22 N -0.353 5.353 23 C -0.050 4.050 24 C -0.047 4.047 25 C -0.213 4.213 26 C -0.083 4.083 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.226 0.774 31 H 0.223 0.777 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.138 0.862 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.740 -7.546 32.556 33.532 hybrid contribution 0.520 -1.966 -0.022 2.034 sum -2.220 -9.512 32.534 33.969 Atomic orbital electron populations 1.22188 0.94921 1.02018 1.02457 1.19440 0.93487 0.96272 0.80440 0.88988 1.45324 1.72634 1.13452 1.08973 1.16031 0.78485 0.85190 0.80285 1.90893 1.57364 1.14415 1.84661 1.45522 1.70311 1.13772 1.10105 1.21354 1.00905 0.95082 0.80062 1.19796 0.96088 0.95618 0.94463 1.20929 1.44533 0.98542 0.91903 0.90580 1.25009 0.94934 0.98193 0.95245 1.69906 1.46624 1.36647 1.00573 0.86742 0.78426 0.85699 0.78135 1.20275 1.21338 1.19095 1.19732 1.04928 0.93737 0.96194 1.20749 0.95478 0.99617 0.91958 1.20644 1.08595 0.92218 1.00133 1.17832 0.93134 0.91542 0.86558 1.46313 1.70096 1.05060 1.13825 1.21658 0.98941 0.96755 0.87636 1.21587 1.01370 0.79571 1.02148 1.20588 1.07659 0.99416 0.93687 1.20658 0.96958 0.93669 0.97064 0.91612 0.92671 0.91874 0.77444 0.77682 0.92196 0.92200 0.96060 0.96495 0.92604 0.85796 0.85993 0.93488 0.91635 0.91246 0.92764 0.90996 0.92824 0.86166 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.46 37.16 0.35 -1.41 16 2 C 0.21 2.50 2.77 -69.09 -0.19 2.30 16 3 H 0.09 1.26 7.43 -51.93 -0.39 0.87 16 4 N -0.75 -9.71 5.03 -59.82 -0.30 -10.02 16 5 C 0.70 12.23 8.53 -86.92 -0.74 11.49 16 6 O -0.59 -12.77 16.01 5.29 0.08 -12.69 16 7 N -0.74 -12.87 5.56 -65.23 -0.36 -13.24 16 8 C 0.15 3.15 5.61 -4.05 -0.02 3.13 16 9 C -0.02 -0.51 4.16 -27.89 -0.12 -0.62 16 10 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 11 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 12 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 13 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 14 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 18 C -0.14 -1.48 4.96 -104.59 -0.52 -1.99 16 19 C -0.06 -0.57 9.66 -39.61 -0.38 -0.95 16 20 C -0.19 -1.74 9.21 -39.38 -0.36 -2.10 16 21 C 0.21 1.91 6.55 -83.78 -0.55 1.36 16 22 N -0.64 -4.63 3.41 -187.54 -0.64 -5.27 16 23 C 0.09 0.47 10.16 59.85 0.61 1.08 16 24 C 0.10 0.50 9.40 59.85 0.56 1.06 16 25 C -0.19 -1.72 9.31 -39.38 -0.37 -2.08 16 26 C -0.06 -0.60 9.04 -39.61 -0.36 -0.96 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.39 4.09 6.88 -40.82 -0.28 3.81 16 31 H 0.39 5.62 8.49 -40.82 -0.35 5.27 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 35 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.12 1.03 8.03 -52.49 -0.42 0.61 16 38 H 0.12 0.88 6.14 -52.49 -0.32 0.56 16 39 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.06 0.23 7.92 -51.93 -0.41 -0.18 16 41 H 0.07 0.34 6.20 -51.93 -0.32 0.02 16 42 H 0.05 0.28 7.93 -51.93 -0.41 -0.13 16 43 H 0.07 0.24 7.80 -51.93 -0.40 -0.16 16 44 H 0.05 0.27 7.97 -51.93 -0.41 -0.15 16 45 H 0.12 0.90 6.73 -52.49 -0.35 0.54 16 46 H 0.12 0.95 6.91 -52.49 -0.36 0.59 16 LS Contribution 374.49 15.07 5.64 5.64 Total: -1.00 -34.47 374.49 -9.31 -43.78 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.33 Total: 4.97 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.52 Total: -2.95 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.53 Total: -55.37 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.47 -9.31 -43.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773439708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.242 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds