Wall clock time and date at job start Fri Apr 10 2020 21:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 O 1.42899 * 109.47405 * 305.00138 * 4 2 1 6 6 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 7 7 C 1.46510 * 119.99910 * 240.00066 * 6 2 1 8 8 N 1.40098 * 120.00396 * 60.00198 * 6 2 1 9 9 C 1.29747 * 120.00065 * 180.02562 * 8 6 2 10 10 C 1.47467 * 119.99778 * 179.97438 * 9 8 6 11 11 C 1.39727 * 120.08226 * 359.72340 * 10 9 8 12 12 C 1.37783 * 119.91872 * 179.78546 * 11 10 9 13 13 C 1.39057 * 120.08102 * 0.46807 * 12 11 10 14 14 N 1.39597 * 119.91975 * 179.76274 * 13 12 11 15 15 C 1.46496 * 119.99848 * 180.02562 * 14 13 12 16 16 C 1.46498 * 119.99730 * 0.02562 * 14 13 12 17 17 C 1.50695 * 109.47303 * 90.00093 * 16 14 13 18 18 H 1.08002 * 120.00193 * 359.97438 * 17 16 14 19 19 C 1.37880 * 120.00108 * 179.97438 * 17 16 14 20 20 N 1.31517 * 120.00017 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99912 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47489 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47305 * 119.99979 * 21 19 17 24 24 H 1.48506 * 109.47336 * 239.99617 * 21 19 17 25 25 C 1.39049 * 120.16253 * 359.78961 * 13 12 11 26 26 C 1.37787 * 120.08057 * 359.97017 * 25 13 12 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46642 * 65.00413 * 4 2 1 31 31 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 32 32 H 0.96699 * 114.00112 * 180.02562 * 5 4 2 33 33 H 1.08999 * 109.47096 * 89.99783 * 7 6 2 34 34 H 1.09001 * 109.46763 * 210.00177 * 7 6 2 35 35 H 1.09005 * 109.46576 * 330.00159 * 7 6 2 36 36 H 1.07998 * 120.00367 * 359.97438 * 9 8 6 37 37 H 1.07998 * 120.03907 * 0.02562 * 11 10 9 38 38 H 1.08001 * 119.96078 * 180.22995 * 12 11 10 39 39 H 1.09004 * 109.46929 * 90.00505 * 15 14 13 40 40 H 1.09000 * 109.47061 * 209.99811 * 15 14 13 41 41 H 1.08999 * 109.47265 * 330.00004 * 15 14 13 42 42 H 1.09001 * 109.47007 * 209.99983 * 16 14 13 43 43 H 1.08997 * 109.47359 * 329.99667 * 16 14 13 44 44 H 0.97001 * 119.99626 * 179.97438 * 20 19 17 45 45 H 1.07993 * 119.96293 * 179.97438 * 25 13 12 46 46 H 1.07997 * 120.04088 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.4703 -2.0304 -1.3094 6 7 2.0183 -0.6906 1.1962 7 6 2.8605 0.0214 2.1606 8 7 1.6799 -2.0319 1.4179 9 6 2.1119 -2.6434 2.4776 10 6 1.7552 -4.0551 2.7112 11 6 0.9473 -4.7341 1.7954 12 6 0.6197 -6.0543 2.0148 13 6 1.0841 -6.7082 3.1508 14 7 0.7460 -8.0444 3.3722 15 6 1.2338 -8.7347 4.5686 16 6 -0.0965 -8.7562 2.4080 17 6 0.7745 -9.4114 1.3673 18 1 1.8483 -9.3076 1.4186 19 6 0.2006 -10.1433 0.3495 20 7 -1.1070 -10.2702 0.2872 21 14 1.2802 -10.9549 -0.9409 22 1 2.7064 -10.6634 -0.6476 23 1 1.0607 -12.4234 -0.9176 24 1 0.9318 -10.4236 -2.2832 25 6 1.8838 -6.0342 4.0670 26 6 2.2196 -4.7153 3.8518 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7517 -0.1583 -2.1369 31 1 3.1264 -0.7995 -1.2055 32 1 1.7507 -2.5465 -2.0776 33 1 2.2303 0.4946 2.9136 34 1 3.5361 -0.6846 2.6437 35 1 3.4418 0.7838 1.6419 36 1 2.7328 -2.1186 3.1885 37 1 0.5833 -4.2258 0.9148 38 1 -0.0017 -6.5809 1.3055 39 1 0.5157 -8.6087 5.3790 40 1 1.3543 -9.7962 4.3519 41 1 2.1942 -8.3131 4.8653 42 1 -0.6783 -9.5180 2.9268 43 1 -0.7716 -8.0501 1.9246 44 1 -1.5107 -10.7848 -0.4291 45 1 2.2423 -6.5450 4.9484 46 1 2.8405 -4.1923 4.5641 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842544708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:57 Heat of formation + Delta-G solvation = 38.901621 kcal Electronic energy + Delta-G solvation = -24717.054920 eV Core-core repulsion = 21222.340992 eV Total energy + Delta-G solvation = -3494.713928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.88090 -38.16450 -36.42457 -35.47762 -33.43956 -32.60001 -30.78120 -30.40541 -28.88126 -27.72911 -26.45805 -26.02155 -24.78298 -23.05025 -21.66086 -21.35153 -19.85817 -18.68386 -17.51924 -16.72208 -16.57447 -16.37123 -15.70620 -14.97666 -14.95019 -14.53455 -14.20399 -14.00991 -13.70129 -13.60267 -13.46299 -12.90343 -12.79465 -12.58019 -12.45647 -12.31143 -12.10600 -11.90570 -11.45776 -11.38173 -11.29546 -11.22206 -11.07689 -10.91139 -10.81334 -10.66102 -10.23803 -9.94816 -9.86330 -9.72697 -9.40349 -8.92166 -8.47796 -8.20901 -7.58117 -6.30546 -5.94001 -4.14146 1.78117 2.23321 2.82616 3.22851 3.27828 3.35921 3.41132 4.18346 4.29271 4.44268 4.65482 4.74431 4.92133 4.99033 5.15733 5.22187 5.24786 5.29949 5.38060 5.42545 5.55471 5.56170 5.64476 5.67007 5.80673 5.86874 5.92303 6.07636 6.13907 6.23273 6.31181 6.41819 6.50305 6.57950 6.73634 7.03056 7.08880 7.21405 7.32420 7.35721 7.43611 7.65944 7.76205 7.84461 8.18525 8.29473 8.51581 8.68882 8.95035 9.52577 10.98722 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014155 B = 0.003424 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.608145 B = 8175.661434 C = 9538.844842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.192 3.808 3 H 0.089 0.911 4 C 0.068 3.932 5 O -0.542 6.542 6 N -0.552 5.552 7 C 0.072 3.928 8 N -0.206 5.206 9 C 0.069 3.931 10 C -0.129 4.129 11 C -0.035 4.035 12 C -0.193 4.193 13 C 0.248 3.752 14 N -0.612 5.612 15 C 0.097 3.903 16 C 0.247 3.753 17 C -0.530 4.530 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.896 3.104 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.282 1.282 25 C -0.225 4.225 26 C -0.053 4.053 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.370 0.630 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.036 0.964 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.030 0.970 43 H 0.038 0.962 44 H 0.263 0.737 45 H 0.115 0.885 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.889 19.392 2.653 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.087 3.913 3 H 0.107 0.893 4 C -0.012 4.012 5 O -0.345 6.345 6 N -0.368 5.368 7 C -0.074 4.074 8 N -0.009 5.009 9 C -0.141 4.141 10 C -0.134 4.134 11 C -0.056 4.056 12 C -0.216 4.216 13 C 0.140 3.860 14 N -0.317 5.317 15 C -0.047 4.047 16 C 0.127 3.873 17 C -0.569 4.569 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.723 3.277 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.208 1.208 25 C -0.249 4.249 26 C -0.074 4.074 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.216 0.784 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.133 0.867 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.891 19.394 2.262 20.395 hybrid contribution 1.510 -0.393 -0.565 1.660 sum 7.402 19.001 1.697 20.463 Atomic orbital electron populations 1.22046 0.94896 1.03938 1.00605 1.20708 0.94881 0.93116 0.82547 0.89278 1.22522 0.96310 0.85534 0.96834 1.86731 1.71804 1.26153 1.49840 1.50061 1.56626 1.06284 1.23791 1.21787 0.94839 0.96896 0.93863 1.74651 1.16048 0.92360 1.17879 1.24004 1.00259 0.94835 0.95016 1.17894 1.06309 0.91046 0.98148 1.21050 0.94106 0.93054 0.97403 1.20871 1.06651 0.95082 0.98990 1.18086 0.90885 0.84450 0.92627 1.47140 1.53170 1.07888 1.23536 1.21493 0.97922 0.97907 0.87391 1.19315 0.89581 0.91675 0.86680 1.21616 0.93859 1.31560 1.09884 0.92168 1.24960 0.95014 0.96292 0.97807 1.69943 1.09263 1.41046 1.33111 0.86471 0.80775 0.78951 0.81453 1.19733 1.21008 1.20833 1.20427 1.06964 0.95489 1.01981 1.20669 0.97612 0.93679 0.95460 0.93207 0.92615 0.90278 0.93832 0.94376 0.78415 0.94155 0.91944 0.91964 0.88459 0.85712 0.84961 0.94531 0.91439 0.92580 0.95170 0.94452 0.92720 0.86693 0.87174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.12 37.16 0.34 -1.40 16 2 C 0.19 2.01 3.32 -67.93 -0.23 1.79 16 3 H 0.09 0.68 7.79 -51.93 -0.40 0.28 16 4 C 0.07 0.69 6.85 37.16 0.25 0.94 16 5 O -0.54 -6.92 11.52 -35.23 -0.41 -7.33 16 6 N -0.55 -6.97 3.63 -114.60 -0.42 -7.38 16 7 C 0.07 0.69 10.14 59.85 0.61 1.30 16 8 N -0.21 -3.22 8.91 32.15 0.29 -2.93 16 9 C 0.07 1.05 10.15 -14.67 -0.15 0.90 16 10 C -0.13 -2.20 5.87 -105.02 -0.62 -2.82 16 11 C -0.04 -0.67 9.57 -39.19 -0.37 -1.04 16 12 C -0.19 -4.08 9.19 -39.44 -0.36 -4.44 16 13 C 0.25 5.10 6.56 -83.72 -0.55 4.56 16 14 N -0.61 -13.21 2.99 -180.94 -0.54 -13.75 16 15 C 0.10 1.70 10.18 59.84 0.61 2.31 16 16 C 0.25 6.25 4.91 -5.20 -0.03 6.22 16 17 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 18 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 21 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C -0.23 -3.94 9.19 -39.45 -0.36 -4.30 16 26 C -0.05 -0.84 9.78 -39.19 -0.38 -1.22 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.13 7.42 -51.93 -0.39 0.74 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.37 3.42 9.12 45.56 0.42 3.84 16 33 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.60 6.19 -51.93 -0.32 0.28 16 35 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 36 H 0.10 1.25 5.91 -52.49 -0.31 0.94 16 37 H 0.12 2.38 7.55 -52.49 -0.40 1.98 16 38 H 0.13 3.06 6.12 -52.49 -0.32 2.74 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 41 H 0.06 0.86 6.18 -51.93 -0.32 0.54 16 42 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 43 H 0.04 1.00 6.18 -51.93 -0.32 0.68 16 44 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.12 1.77 6.12 -52.49 -0.32 1.45 16 46 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -31.79 376.52 -7.79 -39.57 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.44 Total: 5.25 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.66 Total: -10.49 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.07 Total: -49.11 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.41 Total: -7.33 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.79 -7.79 -39.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842544708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.476 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds