Wall clock time and date at job start Fri Apr 10 2020 21:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00128 * 2 1 4 4 C 1.52997 * 109.47303 * 76.47397 * 3 2 1 5 5 C 1.52999 * 109.47229 * 179.97438 * 4 3 2 6 6 O 1.42895 * 109.47318 * 180.02562 * 5 4 3 7 7 C 1.35901 * 117.00010 * 180.02562 * 6 5 4 8 8 C 1.38731 * 120.05806 * 180.02562 * 7 6 5 9 9 C 1.38140 * 119.94740 * 179.97438 * 8 7 6 10 10 C 1.38263 * 120.05675 * 0.02562 * 9 8 7 11 11 C 1.38262 * 120.10947 * 359.96389 * 10 9 8 12 12 C 1.38141 * 120.05728 * 0.04248 * 11 10 9 13 13 C 1.46895 * 110.99776 * 236.04243 * 2 1 3 14 14 C 1.53008 * 109.47078 * 210.71177 * 13 2 1 15 15 C 1.53000 * 109.47124 * 294.43318 * 14 13 2 16 16 C 1.53007 * 109.46774 * 54.43084 * 14 13 2 17 17 C 1.52994 * 109.47181 * 174.43149 * 14 13 2 18 18 C 1.50702 * 109.47230 * 180.02562 * 17 14 13 19 19 H 1.07996 * 119.99621 * 359.97438 * 18 17 14 20 20 C 1.37873 * 120.00238 * 180.02562 * 18 17 14 21 21 N 1.31513 * 120.00029 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00016 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47289 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47183 * 120.00024 * 22 20 18 25 25 H 1.48504 * 109.47011 * 239.99750 * 22 20 18 26 26 H 1.09002 * 109.46967 * 64.12024 * 1 2 3 27 27 H 1.09001 * 109.47512 * 184.12157 * 1 2 3 28 28 H 1.09005 * 109.46930 * 304.12266 * 1 2 3 29 29 H 1.09007 * 109.46776 * 316.47848 * 3 2 1 30 30 H 1.09003 * 109.47049 * 196.47899 * 3 2 1 31 31 H 1.08997 * 109.46921 * 60.00356 * 4 3 2 32 32 H 1.08997 * 109.47625 * 299.99851 * 4 3 2 33 33 H 1.09009 * 109.47266 * 60.00275 * 5 4 3 34 34 H 1.09003 * 109.47106 * 300.00492 * 5 4 3 35 35 H 1.08005 * 120.02657 * 359.69761 * 8 7 6 36 36 H 1.08005 * 119.97668 * 179.97438 * 9 8 7 37 37 H 1.08004 * 119.94601 * 179.97438 * 10 9 8 38 38 H 1.08008 * 119.97119 * 180.02562 * 11 10 9 39 39 H 1.08005 * 120.02948 * 179.97438 * 12 11 10 40 40 H 1.09000 * 109.47334 * 330.71007 * 13 2 1 41 41 H 1.08995 * 109.47379 * 90.71753 * 13 2 1 42 42 H 1.09001 * 109.46884 * 70.58652 * 15 14 13 43 43 H 1.08999 * 109.46875 * 190.58447 * 15 14 13 44 44 H 1.09003 * 109.46925 * 310.59012 * 15 14 13 45 45 H 1.09002 * 109.47078 * 65.05195 * 16 14 13 46 46 H 1.08999 * 109.46366 * 185.05037 * 16 14 13 47 47 H 1.08994 * 109.46803 * 305.05262 * 16 14 13 48 48 H 1.09000 * 109.47456 * 300.00362 * 17 14 13 49 49 H 1.09001 * 109.47348 * 60.00182 * 17 14 13 50 50 H 0.97000 * 120.00037 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.8633 1.9684 1.4024 5 6 2.4122 3.3966 1.4026 6 8 2.2893 3.9540 2.7125 7 6 2.7334 5.2267 2.8856 8 6 2.6451 5.8300 4.1318 9 6 3.0977 7.1236 4.3053 10 6 3.6378 7.8173 3.2381 11 6 3.7271 7.2182 1.9952 12 6 3.2759 5.9249 1.8165 13 6 1.9954 -0.7660 -1.1375 14 6 3.3360 -1.3949 -0.7523 15 6 4.3672 -0.2903 -0.5121 16 6 3.1644 -2.2190 0.5254 17 6 3.8171 -2.3041 -1.8848 18 6 5.1372 -2.9239 -1.5052 19 1 5.5882 -2.6921 -0.5516 20 6 5.7698 -3.7860 -2.3756 21 7 5.2208 -4.0678 -3.5370 22 14 7.4065 -4.5537 -1.9052 23 1 7.8070 -4.0780 -0.5567 24 1 7.2732 -6.0327 -1.8896 25 1 8.4406 -4.1604 -2.8957 26 1 -0.3633 0.4486 -0.9246 27 1 -0.3634 -1.0250 0.0739 28 1 -0.3633 0.5765 0.8508 29 1 1.4300 1.9776 -0.7077 30 1 3.0457 1.3574 -0.2915 31 1 2.4288 1.3623 2.1101 32 1 0.8131 1.9825 1.6939 33 1 1.8471 4.0031 0.6947 34 1 3.4625 3.3822 1.1112 35 1 2.2188 5.2904 4.9645 36 1 3.0288 7.5939 5.2751 37 1 3.9908 8.8287 3.3757 38 1 4.1499 7.7620 1.1633 39 1 3.3455 5.4575 0.8453 40 1 1.2889 -1.5519 -1.4045 41 1 2.1376 -0.1007 -1.9890 42 1 4.1227 0.2410 0.4077 43 1 5.3594 -0.7327 -0.4234 44 1 4.3538 0.4075 -1.3493 45 1 2.4984 -3.0593 0.3290 46 1 4.1355 -2.5930 0.8496 47 1 2.7369 -1.5917 1.3076 48 1 3.0825 -3.0909 -2.0561 49 1 3.9394 -1.7170 -2.7951 50 1 5.6660 -4.6741 -4.1495 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091899607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:38:30 Heat of formation + Delta-G solvation = -24.163637 kcal Electronic energy + Delta-G solvation = -24898.994199 eV Core-core repulsion = 21505.085900 eV Total energy + Delta-G solvation = -3393.908299 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30949 -38.58147 -37.61470 -35.29305 -32.70653 -32.05292 -31.20889 -29.90393 -27.48636 -26.85030 -26.34387 -25.91489 -23.89352 -22.92627 -22.41002 -21.52180 -20.69206 -18.43044 -17.91369 -16.52167 -16.39453 -16.16343 -15.97006 -15.31774 -14.94801 -14.74643 -14.43510 -14.24540 -13.70905 -13.65932 -13.48284 -13.06234 -12.80759 -12.69432 -12.45646 -12.25862 -11.98768 -11.85968 -11.73223 -11.61393 -11.38671 -11.18081 -10.97842 -10.90356 -10.78579 -10.71544 -10.53042 -10.33801 -10.31224 -9.95226 -9.60252 -9.27827 -8.95112 -8.83197 -8.44146 -8.30585 -7.99078 -5.95089 -3.94738 1.06688 1.19463 2.93733 3.33233 3.41186 3.44976 3.53351 4.18569 4.50529 4.55176 4.62946 4.75955 4.85808 4.92152 5.07486 5.11644 5.16454 5.26163 5.31507 5.38708 5.41247 5.49059 5.54575 5.64711 5.72226 5.73408 5.89962 5.97778 6.03199 6.04958 6.07011 6.14343 6.19289 6.26009 6.27758 6.34707 6.52407 6.55912 6.73998 6.81658 6.89493 7.20603 7.24905 7.25392 7.29398 7.38210 7.48743 7.72640 7.87845 8.05690 8.50702 9.11020 9.68016 11.16633 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.002499 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.584735 B =11203.994716 C =12151.696248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.533 5.533 3 C 0.043 3.957 4 C -0.111 4.111 5 C 0.061 3.939 6 O -0.313 6.313 7 C 0.134 3.866 8 C -0.156 4.156 9 C -0.082 4.082 10 C -0.164 4.164 11 C -0.080 4.080 12 C -0.210 4.210 13 C 0.065 3.935 14 C -0.052 4.052 15 C -0.133 4.133 16 C -0.115 4.115 17 C 0.032 3.968 18 C -0.504 4.504 19 H 0.060 0.940 20 C 0.053 3.947 21 N -0.898 5.898 22 Si 0.887 3.113 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.286 1.286 26 H 0.019 0.981 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.066 0.934 41 H 0.033 0.967 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.035 0.965 45 H 0.037 0.963 46 H 0.050 0.950 47 H 0.047 0.953 48 H 0.014 0.986 49 H 0.011 0.989 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.814 20.938 11.558 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.257 5.257 3 C -0.085 4.085 4 C -0.149 4.149 5 C -0.015 4.015 6 O -0.227 6.227 7 C 0.088 3.912 8 C -0.174 4.174 9 C -0.100 4.100 10 C -0.182 4.182 11 C -0.098 4.098 12 C -0.229 4.229 13 C -0.062 4.062 14 C -0.053 4.053 15 C -0.189 4.189 16 C -0.172 4.172 17 C -0.005 4.005 18 C -0.542 4.542 19 H 0.078 0.922 20 C -0.147 4.147 21 N -0.538 5.538 22 Si 0.715 3.285 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.212 1.212 26 H 0.038 0.962 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.032 0.968 49 H 0.030 0.970 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.729 20.452 11.957 24.919 hybrid contribution 0.679 -0.048 -0.985 1.197 sum -7.050 20.404 10.972 24.216 Atomic orbital electron populations 1.22445 0.88351 1.01993 0.99664 1.61871 1.06697 1.12284 1.44818 1.22361 1.02370 0.89089 0.94696 1.21476 1.02219 0.92303 0.98893 1.22840 1.01255 0.95174 0.82220 1.86069 1.78133 1.25455 1.33033 1.19078 0.93767 0.84120 0.94187 1.20478 1.05522 0.95873 0.95573 1.20967 0.96637 0.93439 0.98986 1.21058 1.03364 1.00553 0.93255 1.20974 0.97315 0.94158 0.97400 1.21335 1.05776 0.96819 0.98964 1.22356 0.98050 0.96059 0.89760 1.20568 0.91434 0.95398 0.97852 1.21960 1.00707 0.97653 0.98629 1.21575 1.00668 0.98318 0.96653 1.19147 0.95966 0.93425 0.92001 1.21274 1.04923 1.25593 1.02417 0.92213 1.25021 0.97621 0.96905 0.95147 1.69976 1.38907 1.36327 1.08617 0.86617 0.84295 0.79103 0.78479 1.19754 1.21175 1.21228 0.96230 0.91441 0.91927 0.95207 0.88627 0.89846 0.91198 0.92244 0.91708 0.85234 0.85478 0.86036 0.85842 0.85361 0.91597 0.94860 0.93948 0.91597 0.94587 0.94407 0.93089 0.93401 0.96775 0.97020 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.24 60.07 0.56 0.84 16 2 N -0.53 -7.60 3.43 -242.91 -0.83 -8.43 16 3 C 0.04 0.53 4.12 -3.83 -0.02 0.52 16 4 C -0.11 -1.24 5.70 -26.73 -0.15 -1.39 16 5 C 0.06 0.63 4.74 37.16 0.18 0.80 16 6 O -0.31 -3.73 10.14 -19.43 -0.20 -3.93 16 7 C 0.13 1.49 6.69 -39.22 -0.26 1.23 16 8 C -0.16 -1.54 9.99 -39.44 -0.39 -1.93 16 9 C -0.08 -0.68 10.04 -39.61 -0.40 -1.08 16 10 C -0.16 -1.32 10.04 -39.56 -0.40 -1.72 16 11 C -0.08 -0.70 10.04 -39.61 -0.40 -1.09 16 12 C -0.21 -2.09 9.04 -39.43 -0.36 -2.44 16 13 C 0.06 1.10 4.23 -3.82 -0.02 1.09 16 14 C -0.05 -1.03 0.61 -154.50 -0.09 -1.12 16 15 C -0.13 -2.45 6.81 37.16 0.25 -2.20 16 16 C -0.11 -2.23 7.97 37.16 0.30 -1.93 16 17 C 0.03 0.80 4.04 -27.89 -0.11 0.69 16 18 C -0.50 -13.75 7.56 -34.44 -0.26 -14.01 16 19 H 0.06 1.60 5.75 -52.49 -0.30 1.30 16 20 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 21 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 22 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 28 H 0.06 0.67 6.81 -51.93 -0.35 0.32 16 29 H 0.03 0.35 7.99 -51.93 -0.41 -0.07 16 30 H 0.10 1.28 4.28 -51.93 -0.22 1.06 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.76 6.90 -51.93 -0.36 0.41 16 33 H 0.06 0.54 7.66 -51.92 -0.40 0.15 16 34 H 0.06 0.64 7.67 -51.93 -0.40 0.25 16 35 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 36 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 37 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 39 H 0.13 1.12 6.30 -52.48 -0.33 0.79 16 40 H 0.07 1.14 7.72 -51.93 -0.40 0.74 16 41 H 0.03 0.57 7.79 -51.93 -0.40 0.16 16 42 H 0.04 0.69 6.39 -51.93 -0.33 0.36 16 43 H 0.07 1.36 6.34 -51.93 -0.33 1.03 16 44 H 0.04 0.63 7.54 -51.93 -0.39 0.24 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 1.05 6.79 -51.93 -0.35 0.70 16 47 H 0.05 0.84 7.28 -51.93 -0.38 0.47 16 48 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -30.15 386.55 -9.89 -40.04 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -8.72 Total: -1.68 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -1.67 Total: -22.33 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: -0.10 Total: -34.54 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.20 Total: -3.93 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.15 -9.89 -40.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091899607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.873 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds