Wall clock time and date at job start Fri Apr 10 2020 21:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00128 * 2 1 4 4 C 1.52997 * 109.47303 * 76.47397 * 3 2 1 5 5 C 1.52999 * 109.47229 * 179.97438 * 4 3 2 6 6 O 1.42895 * 109.47318 * 180.02562 * 5 4 3 7 7 C 1.35901 * 117.00010 * 180.02562 * 6 5 4 8 8 C 1.38731 * 120.05806 * 180.02562 * 7 6 5 9 9 C 1.38140 * 119.94740 * 179.97438 * 8 7 6 10 10 C 1.38263 * 120.05675 * 0.02562 * 9 8 7 11 11 C 1.38262 * 120.10947 * 359.96389 * 10 9 8 12 12 C 1.38141 * 120.05728 * 0.04248 * 11 10 9 13 13 C 1.46895 * 110.99776 * 236.04243 * 2 1 3 14 14 C 1.53008 * 109.47078 * 210.71177 * 13 2 1 15 15 C 1.53000 * 109.47124 * 294.43318 * 14 13 2 16 16 C 1.53007 * 109.46774 * 54.43084 * 14 13 2 17 17 C 1.52994 * 109.47181 * 174.43149 * 14 13 2 18 18 C 1.50702 * 109.47230 * 180.02562 * 17 14 13 19 19 H 1.07996 * 119.99621 * 359.97438 * 18 17 14 20 20 C 1.37873 * 120.00238 * 180.02562 * 18 17 14 21 21 N 1.31513 * 120.00029 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00016 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47289 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47183 * 120.00024 * 22 20 18 25 25 H 1.48504 * 109.47011 * 239.99750 * 22 20 18 26 26 H 1.09002 * 109.46967 * 64.12024 * 1 2 3 27 27 H 1.09001 * 109.47512 * 184.12157 * 1 2 3 28 28 H 1.09005 * 109.46930 * 304.12266 * 1 2 3 29 29 H 1.09007 * 109.46776 * 316.47848 * 3 2 1 30 30 H 1.09003 * 109.47049 * 196.47899 * 3 2 1 31 31 H 1.08997 * 109.46921 * 60.00356 * 4 3 2 32 32 H 1.08997 * 109.47625 * 299.99851 * 4 3 2 33 33 H 1.09009 * 109.47266 * 60.00275 * 5 4 3 34 34 H 1.09003 * 109.47106 * 300.00492 * 5 4 3 35 35 H 1.08005 * 120.02657 * 359.69761 * 8 7 6 36 36 H 1.08005 * 119.97668 * 179.97438 * 9 8 7 37 37 H 1.08004 * 119.94601 * 179.97438 * 10 9 8 38 38 H 1.08008 * 119.97119 * 180.02562 * 11 10 9 39 39 H 1.08005 * 120.02948 * 179.97438 * 12 11 10 40 40 H 1.09000 * 109.47334 * 330.71007 * 13 2 1 41 41 H 1.08995 * 109.47379 * 90.71753 * 13 2 1 42 42 H 1.09001 * 109.46884 * 70.58652 * 15 14 13 43 43 H 1.08999 * 109.46875 * 190.58447 * 15 14 13 44 44 H 1.09003 * 109.46925 * 310.59012 * 15 14 13 45 45 H 1.09002 * 109.47078 * 65.05195 * 16 14 13 46 46 H 1.08999 * 109.46366 * 185.05037 * 16 14 13 47 47 H 1.08994 * 109.46803 * 305.05262 * 16 14 13 48 48 H 1.09000 * 109.47456 * 300.00362 * 17 14 13 49 49 H 1.09001 * 109.47348 * 60.00182 * 17 14 13 50 50 H 0.97000 * 120.00037 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.8633 1.9684 1.4024 5 6 2.4122 3.3966 1.4026 6 8 2.2893 3.9540 2.7125 7 6 2.7334 5.2267 2.8856 8 6 2.6451 5.8300 4.1318 9 6 3.0977 7.1236 4.3053 10 6 3.6378 7.8173 3.2381 11 6 3.7271 7.2182 1.9952 12 6 3.2759 5.9249 1.8165 13 6 1.9954 -0.7660 -1.1375 14 6 3.3360 -1.3949 -0.7523 15 6 4.3672 -0.2903 -0.5121 16 6 3.1644 -2.2190 0.5254 17 6 3.8171 -2.3041 -1.8848 18 6 5.1372 -2.9239 -1.5052 19 1 5.5882 -2.6921 -0.5516 20 6 5.7698 -3.7860 -2.3756 21 7 5.2208 -4.0678 -3.5370 22 14 7.4065 -4.5537 -1.9052 23 1 7.8070 -4.0780 -0.5567 24 1 7.2732 -6.0327 -1.8896 25 1 8.4406 -4.1604 -2.8957 26 1 -0.3633 0.4486 -0.9246 27 1 -0.3634 -1.0250 0.0739 28 1 -0.3633 0.5765 0.8508 29 1 1.4300 1.9776 -0.7077 30 1 3.0457 1.3574 -0.2915 31 1 2.4288 1.3623 2.1101 32 1 0.8131 1.9825 1.6939 33 1 1.8471 4.0031 0.6947 34 1 3.4625 3.3822 1.1112 35 1 2.2188 5.2904 4.9645 36 1 3.0288 7.5939 5.2751 37 1 3.9908 8.8287 3.3757 38 1 4.1499 7.7620 1.1633 39 1 3.3455 5.4575 0.8453 40 1 1.2889 -1.5519 -1.4045 41 1 2.1376 -0.1007 -1.9890 42 1 4.1227 0.2410 0.4077 43 1 5.3594 -0.7327 -0.4234 44 1 4.3538 0.4075 -1.3493 45 1 2.4984 -3.0593 0.3290 46 1 4.1355 -2.5930 0.8496 47 1 2.7369 -1.5917 1.3076 48 1 3.0825 -3.0909 -2.0561 49 1 3.9394 -1.7170 -2.7951 50 1 5.6660 -4.6741 -4.1495 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091899607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:38:30 Heat of formation + Delta-G solvation = -39.075945 kcal Electronic energy + Delta-G solvation = -24899.640845 eV Core-core repulsion = 21505.085900 eV Total energy + Delta-G solvation = -3394.554945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.04273 -39.86463 -38.38864 -36.76435 -34.38317 -33.39153 -31.87183 -30.61877 -29.26240 -28.24056 -27.74318 -27.15374 -25.37868 -24.06006 -23.30573 -22.44510 -21.68807 -19.55069 -19.15712 -18.30945 -17.37457 -17.10954 -16.71014 -16.67842 -16.18867 -16.02583 -15.64756 -15.23498 -14.83253 -14.72128 -14.42163 -14.30887 -14.12731 -14.05519 -13.85191 -13.54316 -13.32871 -12.96851 -12.73034 -12.68890 -12.55184 -12.47059 -12.44392 -12.30379 -12.23078 -12.11233 -11.95383 -11.76326 -11.64952 -11.39672 -11.26249 -10.83864 -10.62979 -10.49835 -9.93684 -9.16196 -9.14285 -8.13288 -6.19569 0.40902 0.51164 1.39789 1.41134 1.53192 2.15138 2.44144 2.86758 3.11146 3.20630 3.87938 3.91327 3.98744 4.07166 4.13669 4.17873 4.26540 4.29932 4.38225 4.43030 4.47164 4.51790 4.53192 4.59230 4.66711 4.74767 4.78121 4.80902 4.88743 5.00539 5.03156 5.09958 5.10737 5.14953 5.20640 5.25480 5.32171 5.40457 5.50354 5.55149 5.57151 5.62078 5.62977 5.70610 5.88917 5.90032 5.95335 6.15779 6.25934 6.40235 6.48126 6.95726 7.47459 8.99115 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.002499 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.584735 B =11203.994716 C =12151.696248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.045 3.955 4 C -0.100 4.100 5 C 0.063 3.937 6 O -0.331 6.331 7 C 0.108 3.892 8 C -0.172 4.172 9 C -0.084 4.084 10 C -0.166 4.166 11 C -0.088 4.088 12 C -0.223 4.223 13 C 0.076 3.924 14 C -0.049 4.049 15 C -0.123 4.123 16 C -0.105 4.105 17 C 0.039 3.961 18 C -0.510 4.510 19 H 0.064 0.936 20 C -0.005 4.005 21 N -0.938 5.938 22 Si 0.954 3.046 23 H -0.262 1.262 24 H -0.283 1.283 25 H -0.282 1.282 26 H 0.026 0.974 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.133 0.867 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.134 0.866 40 H 0.058 0.942 41 H 0.031 0.969 42 H 0.067 0.933 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.027 0.973 46 H 0.034 0.966 47 H 0.069 0.931 48 H -0.016 1.016 49 H -0.016 1.016 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 22.939 13.050 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.263 5.263 3 C -0.083 4.083 4 C -0.138 4.138 5 C -0.012 4.012 6 O -0.245 6.245 7 C 0.063 3.937 8 C -0.191 4.191 9 C -0.102 4.102 10 C -0.184 4.184 11 C -0.106 4.106 12 C -0.241 4.241 13 C -0.052 4.052 14 C -0.050 4.050 15 C -0.180 4.180 16 C -0.162 4.162 17 C 0.001 3.999 18 C -0.548 4.548 19 H 0.082 0.918 20 C -0.202 4.202 21 N -0.579 5.579 22 Si 0.780 3.220 23 H -0.186 1.186 24 H -0.209 1.209 25 H -0.208 1.208 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.151 0.849 36 H 0.170 0.830 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.152 0.848 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.088 0.912 48 H 0.002 0.998 49 H 0.003 0.997 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.557 22.470 13.467 27.265 hybrid contribution 0.583 -0.594 -1.432 1.656 sum -6.974 21.876 12.035 25.924 Atomic orbital electron populations 1.22489 0.86703 1.02379 1.00798 1.61785 1.08201 1.13211 1.43116 1.22340 1.01881 0.88282 0.95810 1.21325 1.02352 0.92568 0.97546 1.22808 1.01514 0.94731 0.82185 1.86020 1.78669 1.26165 1.33634 1.19356 0.95090 0.84101 0.95151 1.20730 1.06088 0.96792 0.95461 1.21316 0.95722 0.92823 1.00317 1.21437 1.02467 1.01608 0.92883 1.21308 0.96970 0.93856 0.98498 1.21517 1.06068 0.97518 0.99031 1.22063 0.96312 0.96152 0.90695 1.20435 0.93463 0.95131 0.95923 1.21862 0.98768 0.97212 1.00153 1.21478 0.99611 0.98233 0.96910 1.19029 0.94737 0.93131 0.92967 1.21634 1.05619 1.25187 1.02369 0.91789 1.25904 1.01424 0.97702 0.95145 1.70110 1.40682 1.37310 1.09818 0.85550 0.79795 0.78059 0.78588 1.18589 1.20873 1.20786 0.95574 0.91649 0.90099 0.93942 0.89550 0.91110 0.90705 0.91054 0.91563 0.84893 0.82992 0.83588 0.83864 0.84780 0.92370 0.95097 0.91395 0.93952 0.94045 0.95374 0.94713 0.91194 0.99757 0.99715 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.24 127.69 1.18 1.72 16 2 N -0.54 -14.49 3.43 -922.44 -3.16 -17.65 16 3 C 0.04 1.02 4.12 86.30 0.36 1.38 16 4 C -0.10 -2.05 5.70 30.59 0.17 -1.88 16 5 C 0.06 1.21 4.74 71.98 0.34 1.55 16 6 O -0.33 -7.62 10.14 -92.43 -0.94 -8.56 16 7 C 0.11 2.32 6.69 22.51 0.15 2.47 16 8 C -0.17 -3.23 9.99 22.36 0.22 -3.01 16 9 C -0.08 -1.22 10.04 22.25 0.22 -0.99 16 10 C -0.17 -2.27 10.04 22.28 0.22 -2.05 16 11 C -0.09 -1.36 10.04 22.25 0.22 -1.13 16 12 C -0.22 -4.16 9.04 22.37 0.20 -3.96 16 13 C 0.08 2.54 4.23 86.31 0.37 2.91 16 14 C -0.05 -1.94 0.61 -52.18 -0.03 -1.97 16 15 C -0.12 -4.48 6.81 71.98 0.49 -3.99 16 16 C -0.10 -4.05 7.97 71.98 0.57 -3.47 16 17 C 0.04 2.02 4.04 29.85 0.12 2.14 16 18 C -0.51 -28.35 7.56 25.60 0.19 -28.16 16 19 H 0.06 3.45 5.75 -2.91 -0.02 3.43 16 20 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 21 N -0.94 -57.44 13.29 21.45 0.28 -57.15 16 22 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 26 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 1.48 8.06 -2.39 -0.02 1.46 16 28 H 0.08 1.52 6.81 -2.38 -0.02 1.50 16 29 H 0.04 0.89 7.99 -2.38 -0.02 0.87 16 30 H 0.09 2.15 4.28 -2.39 -0.01 2.14 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.47 6.90 -2.39 -0.02 1.45 16 33 H 0.07 1.19 7.66 -2.38 -0.02 1.17 16 34 H 0.07 1.24 7.67 -2.39 -0.02 1.22 16 35 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 38 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.13 2.20 6.30 -2.91 -0.02 2.18 16 40 H 0.06 2.03 7.72 -2.39 -0.02 2.01 16 41 H 0.03 1.04 7.79 -2.39 -0.02 1.02 16 42 H 0.07 2.11 6.39 -2.39 -0.02 2.10 16 43 H 0.04 1.72 6.34 -2.39 -0.02 1.71 16 44 H 0.04 1.43 7.54 -2.39 -0.02 1.42 16 45 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.03 1.42 6.79 -2.39 -0.02 1.40 16 47 H 0.07 2.37 7.28 -2.39 -0.02 2.35 16 48 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 49 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 50 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -65.74 386.55 4.57 -61.17 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.89 Total: 13.67 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 5.47 Total: -38.29 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -2.88 Total: -74.80 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.94 Total: -8.56 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -65.74 4.57 -61.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091899607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.093 kcal (2) G-P(sol) polarization free energy of solvation -65.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds