Wall clock time and date at job start Fri Apr 10 2020 21:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 O 1.42903 * 109.46726 * 65.00082 * 4 2 1 6 6 C 1.35904 * 116.99628 * 180.02562 * 5 4 2 7 7 C 1.38758 * 120.05922 * 359.72826 * 6 5 4 8 8 C 1.38121 * 119.94303 * 179.69478 * 7 6 5 9 9 C 1.38284 * 120.05670 * 0.60266 * 8 7 6 10 10 C 1.38245 * 120.11162 * 359.67148 * 9 8 7 11 11 C 1.50704 * 119.97222 * 179.97438 * 10 9 8 12 12 N 1.46895 * 109.47120 * 270.02470 * 11 10 9 13 13 C 1.46902 * 110.99707 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47177 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47140 * 300.00093 * 14 13 12 16 16 C 1.53007 * 109.46881 * 60.00560 * 14 13 12 17 17 C 1.50701 * 109.47184 * 179.97438 * 14 13 12 18 18 H 1.08003 * 119.99885 * 0.02562 * 17 14 13 19 19 C 1.37874 * 120.00231 * 180.02562 * 17 14 13 20 20 N 1.31516 * 120.00138 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 120.00218 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47370 * 59.99930 * 21 19 17 23 23 H 1.48504 * 109.47150 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47191 * 299.99923 * 21 19 17 25 25 C 1.38173 * 120.05607 * 0.02881 * 10 9 8 26 26 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 28 28 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 29 29 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 30 30 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 32 32 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 33 33 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 34 34 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 35 35 H 1.08003 * 120.02200 * 359.97438 * 7 6 5 36 36 H 1.07998 * 119.96674 * 180.29445 * 8 7 6 37 37 H 1.08003 * 119.94493 * 179.69558 * 9 8 7 38 38 H 1.09002 * 109.46581 * 30.02752 * 11 10 9 39 39 H 1.08999 * 109.46711 * 150.02339 * 11 10 9 40 40 H 1.00903 * 110.99966 * 56.05092 * 12 11 10 41 41 H 1.08999 * 109.47119 * 300.00249 * 13 12 11 42 42 H 1.09002 * 109.46959 * 60.00222 * 13 12 11 43 43 H 1.09002 * 109.46872 * 60.00333 * 15 14 13 44 44 H 1.09006 * 109.46941 * 179.97438 * 15 14 13 45 45 H 1.08992 * 109.47211 * 299.99394 * 15 14 13 46 46 H 1.08993 * 109.47293 * 60.00035 * 16 14 13 47 47 H 1.08997 * 109.46777 * 180.02562 * 16 14 13 48 48 H 1.09003 * 109.46413 * 299.99392 * 16 14 13 49 49 H 0.96993 * 120.00483 * 179.97438 * 20 19 17 50 50 H 1.07998 * 120.02728 * 180.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6619 -2.0981 1.1920 6 6 2.0397 -2.8854 2.2334 7 6 2.7643 -2.3450 3.2861 8 6 3.1416 -3.1459 4.3462 9 6 2.8084 -4.4880 4.3532 10 6 2.0914 -5.0301 3.3029 11 6 1.7305 -6.4933 3.3135 12 7 2.7972 -7.2654 2.6625 13 6 2.4793 -8.6996 2.6548 14 6 3.6104 -9.4691 1.9698 15 6 3.7658 -8.9734 0.5306 16 6 4.9173 -9.2405 2.7319 17 6 3.2845 -10.9404 1.9625 18 1 2.3626 -11.2915 2.4021 19 6 4.1632 -11.8383 1.3946 20 7 5.2861 -11.4109 0.8597 21 14 3.7590 -13.6620 1.3849 22 1 2.4909 -13.8841 0.6447 23 1 4.8575 -14.4090 0.7212 24 1 3.6075 -14.1429 2.7817 25 6 1.7063 -4.2318 2.2429 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1263 -0.6442 1.2952 34 1 1.6053 -0.2617 2.1370 35 1 3.0292 -1.2980 3.2785 36 1 3.7015 -2.7247 5.1681 37 1 3.1086 -5.1137 5.1808 38 1 1.6139 -6.8312 4.3432 39 1 0.7946 -6.6405 2.7745 40 1 3.6881 -7.0952 3.1046 41 1 2.3681 -9.0526 3.6801 42 1 1.5485 -8.8625 2.1115 43 1 4.0017 -7.9093 0.5364 44 1 4.5720 -9.5214 0.0427 45 1 2.8348 -9.1364 -0.0123 46 1 4.8065 -9.5937 3.7571 47 1 5.7232 -9.7884 2.2436 48 1 5.1531 -8.1763 2.7375 49 1 5.9045 -12.0426 0.4605 50 1 1.1458 -4.6557 1.4228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459729607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:15 Heat of formation + Delta-G solvation = -35.684549 kcal Electronic energy + Delta-G solvation = -24711.762966 eV Core-core repulsion = 21317.355083 eV Total energy + Delta-G solvation = -3394.407883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23979 -38.19077 -36.74134 -35.51101 -33.98960 -31.60539 -30.42032 -29.66760 -27.52110 -26.88900 -25.56725 -25.49301 -25.12545 -23.03212 -22.50347 -21.21256 -20.29578 -18.45395 -17.77525 -16.52504 -16.04423 -15.99214 -15.86792 -15.23025 -14.70701 -14.49739 -14.31769 -14.12441 -13.77423 -13.41633 -13.35832 -12.98161 -12.69579 -12.52409 -12.41747 -12.26508 -12.07758 -11.70663 -11.56693 -11.47927 -11.38610 -11.13144 -11.04805 -10.96088 -10.83354 -10.70246 -10.60649 -10.53134 -10.13981 -10.02733 -9.34616 -9.10085 -8.77952 -8.58762 -8.25821 -8.17513 -7.66733 -5.87887 -3.98387 1.35396 1.49861 3.05350 3.34798 3.39539 3.42115 3.78453 4.40806 4.46842 4.47062 4.70954 4.78745 4.83264 4.96880 5.06884 5.09849 5.20608 5.21869 5.29882 5.37275 5.38171 5.39869 5.48708 5.55786 5.56558 5.69750 5.79101 5.88934 5.97632 5.98377 6.10074 6.31820 6.36509 6.41192 6.45311 6.69190 6.75398 6.81852 6.92764 7.11764 7.20617 7.41235 7.43212 7.51006 7.75037 7.79413 7.86502 7.99868 8.24824 8.38312 8.59085 9.02862 9.66309 11.12588 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.002393 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.833425 B =11698.252754 C =12213.533249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.064 3.936 5 O -0.313 6.313 6 C 0.127 3.873 7 C -0.215 4.215 8 C -0.083 4.083 9 C -0.153 4.153 10 C -0.032 4.032 11 C 0.093 3.907 12 N -0.680 5.680 13 C 0.074 3.926 14 C 0.069 3.931 15 C -0.119 4.119 16 C -0.133 4.133 17 C -0.506 4.506 18 H 0.051 0.949 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.279 1.279 25 C -0.129 4.129 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.034 0.966 39 H 0.077 0.923 40 H 0.339 0.661 41 H 0.014 0.986 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.074 0.926 45 H 0.018 0.982 46 H 0.019 0.981 47 H 0.083 0.917 48 H 0.011 0.989 49 H 0.258 0.742 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 23.746 3.224 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.011 4.011 5 O -0.227 6.227 6 C 0.082 3.918 7 C -0.234 4.234 8 C -0.101 4.101 9 C -0.172 4.172 10 C -0.033 4.033 11 C -0.036 4.036 12 N -0.312 5.312 13 C -0.054 4.054 14 C 0.068 3.932 15 C -0.177 4.177 16 C -0.190 4.190 17 C -0.545 4.545 18 H 0.069 0.931 19 C -0.136 4.136 20 N -0.524 5.524 21 Si 0.717 3.283 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.205 1.205 25 C -0.148 4.148 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.052 0.948 39 H 0.095 0.905 40 H 0.158 0.842 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.039 0.961 44 H 0.092 0.908 45 H 0.037 0.963 46 H 0.038 0.962 47 H 0.102 0.898 48 H 0.030 0.970 49 H 0.068 0.932 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.256 23.714 2.315 24.634 hybrid contribution 0.118 -1.095 1.138 1.584 sum -6.138 22.619 3.453 23.690 Atomic orbital electron populations 1.21816 0.94333 1.02692 1.01579 1.21133 0.97004 0.95732 0.97604 1.21783 1.01242 0.94866 1.02415 1.22866 0.99437 0.79869 0.98930 1.86057 1.74376 1.20592 1.41679 1.18966 0.94894 0.90871 0.87095 1.21147 1.05353 1.00541 0.96360 1.20843 0.98263 0.93629 0.97333 1.20983 1.01388 0.95301 0.99495 1.19720 0.95320 0.95411 0.92805 1.20916 0.96738 0.88502 0.97402 1.60661 1.04018 1.08970 1.57531 1.22191 1.00678 0.84635 0.97859 1.18091 0.89822 0.92975 0.92282 1.21639 1.00531 0.97249 0.98286 1.21838 1.02173 0.96676 0.98347 1.21068 1.04810 0.91192 1.37434 0.93054 1.24889 0.95088 0.98382 0.95264 1.69825 1.09908 1.33828 1.38791 0.86718 0.77844 0.85653 0.78061 1.20404 1.21390 1.20505 1.20305 1.04403 0.90228 0.99891 0.91694 0.92827 0.92531 0.89930 0.92329 0.91721 0.92425 0.92145 0.92235 0.86020 0.86096 0.86164 0.94833 0.90469 0.84196 0.96804 0.92447 0.96065 0.90775 0.96296 0.96232 0.89817 0.97038 0.93152 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.09 37.15 0.34 -0.76 16 2 C -0.10 -0.73 3.16 -90.62 -0.29 -1.01 16 3 C -0.15 -0.82 9.19 37.16 0.34 -0.47 16 4 C 0.06 0.57 4.12 37.16 0.15 0.73 16 5 O -0.31 -3.88 9.67 -19.44 -0.19 -4.07 16 6 C 0.13 1.68 6.69 -39.22 -0.26 1.42 16 7 C -0.22 -2.50 9.04 -39.43 -0.36 -2.86 16 8 C -0.08 -0.95 10.04 -39.61 -0.40 -1.35 16 9 C -0.15 -1.96 9.70 -39.56 -0.38 -2.34 16 10 C -0.03 -0.45 5.39 -104.64 -0.56 -1.02 16 11 C 0.09 1.42 5.81 -4.98 -0.03 1.40 16 12 N -0.68 -12.47 5.70 -115.06 -0.66 -13.12 16 13 C 0.07 1.57 4.58 -3.82 -0.02 1.56 16 14 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 15 C -0.12 -2.98 8.09 37.16 0.30 -2.67 16 16 C -0.13 -3.18 7.92 37.16 0.29 -2.88 16 17 C -0.51 -13.74 8.01 -34.44 -0.28 -14.02 16 18 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 19 C 0.06 1.77 5.15 -17.82 -0.09 1.68 16 20 N -0.88 -24.75 9.35 55.43 0.52 -24.24 16 21 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.13 -1.86 9.64 -39.43 -0.38 -2.24 16 26 H 0.06 0.58 7.82 -51.93 -0.41 0.18 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.50 7.65 -51.93 -0.40 0.11 16 34 H 0.06 0.47 7.67 -51.93 -0.40 0.08 16 35 H 0.12 1.13 6.30 -52.48 -0.33 0.80 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 38 H 0.03 0.49 8.09 -51.93 -0.42 0.07 16 39 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 40 H 0.34 6.22 6.76 -39.29 -0.27 5.96 16 41 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.02 0.49 7.60 -51.93 -0.39 0.09 16 44 H 0.07 2.02 6.07 -51.93 -0.32 1.70 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 48 H 0.01 0.24 6.57 -51.93 -0.34 -0.11 16 49 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 50 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 392.12 15.07 5.91 5.91 Total: -1.00 -28.53 392.12 -10.18 -38.71 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -9.04 Total: 3.80 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -1.71 Total: -23.25 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.14 Total: -37.36 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.19 Total: -4.07 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.53 -10.18 -38.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.025 kcal (2) G-P(sol) polarization free energy of solvation -28.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds