Wall clock time and date at job start Fri Apr 10 2020 21:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39869 * 126.04148 * 2 1 4 4 N 1.30835 * 108.20182 * 179.74026 * 3 2 1 5 5 N 1.40077 * 108.20547 * 0.40338 * 4 3 2 6 6 C 1.46505 * 126.03794 * 179.85376 * 5 4 3 7 7 C 1.52997 * 109.47212 * 304.68983 * 6 5 4 8 8 C 1.52992 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47482 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47452 * 180.02562 * 9 8 7 11 11 N 1.46898 * 109.47342 * 180.02562 * 10 9 8 12 12 C 1.46842 * 111.00155 * 66.04229 * 11 10 9 13 13 C 1.53037 * 109.52264 * 185.84061 * 12 11 10 14 14 C 1.53123 * 109.27856 * 300.82162 * 13 12 11 15 15 C 1.53117 * 109.15922 * 57.65530 * 14 13 12 16 16 H 1.08997 * 109.50314 * 62.32718 * 15 14 13 17 17 C 1.50700 * 109.49967 * 182.40639 * 15 14 13 18 18 H 1.08002 * 120.00121 * 120.00304 * 17 15 14 19 19 C 1.37876 * 120.00088 * 299.99619 * 17 15 14 20 20 N 1.31526 * 119.99742 * 0.02562 * 19 17 15 21 21 Si 1.86794 * 120.00334 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47419 * 90.00064 * 21 19 17 23 23 H 1.48496 * 109.47492 * 210.00321 * 21 19 17 24 24 H 1.48501 * 109.47229 * 330.00115 * 21 19 17 25 25 C 1.46846 * 110.99840 * 190.25537 * 11 10 9 26 26 C 1.34942 * 107.92691 * 359.59221 * 5 4 3 27 27 H 1.08999 * 109.47195 * 270.00134 * 1 2 3 28 28 H 1.09003 * 109.47131 * 30.00139 * 1 2 3 29 29 H 1.08996 * 109.47184 * 150.00052 * 1 2 3 30 30 H 1.08003 * 125.89723 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.47068 * 64.69043 * 6 5 4 32 32 H 1.09001 * 109.47372 * 184.69131 * 6 5 4 33 33 H 1.09002 * 109.47153 * 300.00008 * 7 6 5 34 34 H 1.08998 * 109.47533 * 59.99637 * 7 6 5 35 35 H 1.09002 * 109.47103 * 300.00247 * 8 7 6 36 36 H 1.09001 * 109.47066 * 60.00169 * 8 7 6 37 37 H 1.09002 * 109.47153 * 300.00216 * 9 8 7 38 38 H 1.09001 * 109.47289 * 60.00300 * 9 8 7 39 39 H 1.09002 * 109.46935 * 300.00125 * 10 9 8 40 40 H 1.09001 * 109.46812 * 59.99783 * 10 9 8 41 41 H 1.08998 * 109.46820 * 305.85815 * 12 11 10 42 42 H 1.08998 * 109.46015 * 65.82710 * 12 11 10 43 43 H 1.08998 * 109.50567 * 60.76122 * 13 12 11 44 44 H 1.09007 * 109.50182 * 180.88155 * 13 12 11 45 45 H 1.08996 * 109.52205 * 177.56165 * 14 13 12 46 46 H 1.09002 * 109.52210 * 297.68693 * 14 13 12 47 47 H 0.97001 * 119.99658 * 179.97438 * 20 19 17 48 48 H 1.08995 * 109.46149 * 294.17146 * 25 11 10 49 49 H 1.09001 * 109.46185 * 54.14642 * 25 11 10 50 50 H 1.08004 * 126.12839 * 180.22030 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0056 5 7 3.5843 -0.6706 0.0000 6 6 4.7745 -1.5249 0.0005 7 6 5.6714 -1.1506 -1.1811 8 6 6.9146 -2.0423 -1.1804 9 6 7.8113 -1.6684 -2.3624 10 6 9.0543 -2.5606 -2.3619 11 7 9.9154 -2.2012 -3.4965 12 6 10.4580 -0.8461 -3.3368 13 6 11.2282 -0.4516 -4.5990 14 6 12.3637 -1.4521 -4.8318 15 6 11.7762 -2.8614 -4.9463 16 1 11.1107 -2.9092 -5.8082 17 6 12.8924 -3.8595 -5.1165 18 1 13.0261 -4.6490 -4.3918 19 6 13.7430 -3.7648 -6.1975 20 7 13.5804 -2.8031 -7.0800 21 14 15.1261 -5.0023 -6.4090 22 1 14.6404 -6.1560 -7.2079 23 1 16.2641 -4.3575 -7.1120 24 1 15.5735 -5.4773 -5.0750 25 6 10.9901 -3.1861 -3.6740 26 6 2.3031 -1.0942 0.0000 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5138 30 1 1.9951 2.1578 -0.0004 31 1 5.3228 -1.3836 0.9319 32 1 4.4728 -2.5685 -0.0887 33 1 5.1231 -1.2919 -2.1126 34 1 5.9732 -0.1070 -1.0920 35 1 7.4628 -1.9006 -0.2489 36 1 6.6132 -3.0860 -1.2694 37 1 7.2628 -1.8105 -3.2936 38 1 8.1128 -0.6247 -2.2739 39 1 9.6028 -2.4190 -1.4307 40 1 8.7524 -3.6042 -2.4507 41 1 9.6400 -0.1439 -3.1762 42 1 11.1301 -0.8228 -2.4791 43 1 10.5535 -0.4614 -5.4550 44 1 11.6440 0.5483 -4.4740 45 1 12.8881 -1.2000 -5.7534 46 1 13.0603 -1.4138 -3.9942 47 1 14.1790 -2.7364 -7.8403 48 1 11.6597 -3.1517 -2.8147 49 1 10.5585 -4.1834 -3.7584 50 1 1.9724 -2.1223 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595616632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:39:34 Heat of formation + Delta-G solvation = 48.747126 kcal Electronic energy + Delta-G solvation = -24142.133132 eV Core-core repulsion = 20783.679232 eV Total energy + Delta-G solvation = -3358.453900 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.44530 -38.39176 -36.38885 -34.32748 -33.00345 -31.97264 -31.46793 -30.00073 -29.33217 -26.88291 -25.20606 -24.94254 -23.18890 -21.70911 -21.60431 -21.01700 -20.41577 -20.19515 -18.56735 -17.09247 -16.36816 -16.14238 -15.38029 -15.08528 -14.74099 -14.50971 -14.35420 -13.99967 -13.62324 -13.53831 -13.37889 -13.26351 -12.88524 -12.72362 -12.60315 -12.42906 -12.23705 -12.04818 -11.92696 -11.54195 -11.23826 -11.12559 -11.00339 -10.94136 -10.74496 -10.69886 -10.59417 -10.42164 -10.01729 -9.81051 -9.66988 -9.44120 -8.98187 -8.67811 -8.58178 -8.28306 -7.62306 -5.95630 -4.01881 1.63971 2.24984 2.53291 3.31530 3.38203 3.41042 4.10173 4.36440 4.47589 4.52486 4.66035 4.74250 4.84090 4.92071 4.98710 5.06762 5.17578 5.34089 5.35012 5.39330 5.41148 5.54780 5.59350 5.65529 5.69803 5.79496 5.79939 5.86182 5.88346 5.92984 6.01001 6.11839 6.24964 6.32034 6.41063 6.42273 6.46120 6.54269 6.75275 6.76495 6.78678 7.00077 7.25079 7.43571 7.45715 7.70970 7.77613 7.87124 8.11080 8.20155 8.50438 9.02223 9.62233 11.10267 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.039307 B = 0.001830 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.172262 B =15299.242654 C =15589.893802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.247 4.247 3 C 0.044 3.956 4 N -0.291 5.291 5 N -0.369 5.369 6 C 0.133 3.867 7 C -0.129 4.129 8 C -0.115 4.115 9 C -0.114 4.114 10 C 0.056 3.944 11 N -0.540 5.540 12 C 0.061 3.939 13 C -0.118 4.118 14 C -0.110 4.110 15 C 0.054 3.946 16 H 0.034 0.966 17 C -0.515 4.515 18 H 0.053 0.947 19 C 0.062 3.938 20 N -0.888 5.888 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.068 3.932 26 C 0.051 3.949 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.180 0.820 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.024 0.976 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.021 0.979 43 H 0.060 0.940 44 H 0.045 0.955 45 H 0.090 0.910 46 H 0.029 0.971 47 H 0.259 0.741 48 H 0.017 0.983 49 H 0.058 0.942 50 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.477 4.350 14.841 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.259 4.259 3 C -0.142 4.142 4 N -0.113 5.113 5 N -0.151 5.151 6 C 0.012 3.988 7 C -0.167 4.167 8 C -0.154 4.154 9 C -0.152 4.152 10 C -0.073 4.073 11 N -0.264 5.264 12 C -0.067 4.067 13 C -0.156 4.156 14 C -0.148 4.148 15 C 0.035 3.965 16 H 0.052 0.948 17 C -0.553 4.553 18 H 0.071 0.929 19 C -0.139 4.139 20 N -0.527 5.527 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.059 4.059 26 C -0.095 4.095 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.197 0.803 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.039 0.961 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.109 0.891 46 H 0.048 0.952 47 H 0.069 0.931 48 H 0.036 0.964 49 H 0.076 0.924 50 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -21.304 4.667 14.261 26.058 hybrid contribution 0.483 -0.951 0.621 1.234 sum -20.821 3.717 14.882 25.861 Atomic orbital electron populations 1.20034 0.89409 1.02107 1.01384 1.20156 0.97112 0.91944 1.16689 1.23809 0.90023 0.99813 1.00522 1.77350 1.21196 0.88965 1.23747 1.48704 1.05467 1.04760 1.56131 1.21850 0.83808 0.92322 1.00845 1.21860 0.95952 1.01684 0.97212 1.21496 0.95162 0.99261 0.99444 1.21578 0.95749 0.99925 0.97965 1.22054 0.93766 0.99179 0.92262 1.61986 1.21974 1.02834 1.39648 1.22065 0.96805 0.90228 0.97560 1.21682 0.98759 0.98436 0.96700 1.21646 0.95483 0.95752 1.01950 1.18669 0.93616 0.92637 0.91566 0.94799 1.21157 1.13290 1.12419 1.08482 0.92886 1.24940 0.97584 0.95557 0.95796 1.69900 1.38279 1.31711 1.12811 0.86625 0.81926 0.81478 0.78124 1.20718 1.21277 1.20057 1.22296 0.90569 0.93395 0.99599 1.22365 0.84351 1.00042 1.02748 0.92290 0.91915 0.92250 0.80257 0.89767 0.88631 0.91296 0.90411 0.91820 0.91685 0.91138 0.91916 0.95824 0.91353 0.92232 0.96109 0.92139 0.93622 0.89127 0.95248 0.93081 0.96443 0.92397 0.81176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.37 36.01 0.37 -0.03 16 2 C -0.25 -2.08 6.10 -105.05 -0.64 -2.72 16 3 C 0.04 0.42 11.96 -17.37 -0.21 0.22 16 4 N -0.29 -3.40 12.42 30.62 0.38 -3.02 16 5 N -0.37 -3.59 3.68 -61.36 -0.23 -3.82 16 6 C 0.13 1.00 6.51 -4.04 -0.03 0.97 16 7 C -0.13 -1.14 5.40 -26.74 -0.14 -1.29 16 8 C -0.11 -1.03 5.21 -26.74 -0.14 -1.17 16 9 C -0.11 -1.39 5.15 -26.73 -0.14 -1.52 16 10 C 0.06 0.82 4.96 -3.82 -0.02 0.80 16 11 N -0.54 -10.11 4.65 -234.68 -1.09 -11.20 16 12 C 0.06 1.11 5.29 -3.84 -0.02 1.09 16 13 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 14 C -0.11 -2.66 5.02 -26.61 -0.13 -2.79 16 15 C 0.05 1.37 2.27 -91.69 -0.21 1.16 16 16 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 17 C -0.51 -14.26 8.56 -34.44 -0.29 -14.55 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.55 11.35 55.43 0.63 -24.92 16 21 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 C 0.07 1.48 4.68 -3.83 -0.02 1.46 16 26 C 0.05 0.42 11.36 -17.23 -0.20 0.22 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.18 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 39 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 40 H 0.07 0.98 7.98 -51.93 -0.41 0.56 16 41 H 0.06 0.95 6.22 -51.93 -0.32 0.62 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 1.23 8.01 -51.93 -0.42 0.81 16 50 H 0.17 0.85 8.06 -52.48 -0.42 0.42 16 LS Contribution 392.50 15.07 5.91 5.91 Total: -1.00 -31.01 392.50 -10.86 -41.87 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -9.38 Total: -2.14 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -2.07 Total: -19.04 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.31 Total: -42.95 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.01 -10.86 -41.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.613 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds