Wall clock time and date at job start Fri Apr 10 2020 21:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39869 * 126.04148 * 2 1 4 4 N 1.30835 * 108.20182 * 179.74026 * 3 2 1 5 5 N 1.40077 * 108.20547 * 0.40338 * 4 3 2 6 6 C 1.46505 * 126.03794 * 179.85376 * 5 4 3 7 7 C 1.52997 * 109.47212 * 304.68983 * 6 5 4 8 8 C 1.52992 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47482 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47452 * 180.02562 * 9 8 7 11 11 N 1.46898 * 109.47342 * 180.02562 * 10 9 8 12 12 C 1.46842 * 111.00155 * 66.04229 * 11 10 9 13 13 C 1.53037 * 109.52264 * 185.84061 * 12 11 10 14 14 C 1.53123 * 109.27856 * 300.82162 * 13 12 11 15 15 C 1.53117 * 109.15922 * 57.65530 * 14 13 12 16 16 H 1.08997 * 109.50314 * 62.32718 * 15 14 13 17 17 C 1.50700 * 109.49967 * 182.40639 * 15 14 13 18 18 H 1.08002 * 120.00121 * 120.00304 * 17 15 14 19 19 C 1.37876 * 120.00088 * 299.99619 * 17 15 14 20 20 N 1.31526 * 119.99742 * 0.02562 * 19 17 15 21 21 Si 1.86794 * 120.00334 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47419 * 90.00064 * 21 19 17 23 23 H 1.48496 * 109.47492 * 210.00321 * 21 19 17 24 24 H 1.48501 * 109.47229 * 330.00115 * 21 19 17 25 25 C 1.46846 * 110.99840 * 190.25537 * 11 10 9 26 26 C 1.34942 * 107.92691 * 359.59221 * 5 4 3 27 27 H 1.08999 * 109.47195 * 270.00134 * 1 2 3 28 28 H 1.09003 * 109.47131 * 30.00139 * 1 2 3 29 29 H 1.08996 * 109.47184 * 150.00052 * 1 2 3 30 30 H 1.08003 * 125.89723 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.47068 * 64.69043 * 6 5 4 32 32 H 1.09001 * 109.47372 * 184.69131 * 6 5 4 33 33 H 1.09002 * 109.47153 * 300.00008 * 7 6 5 34 34 H 1.08998 * 109.47533 * 59.99637 * 7 6 5 35 35 H 1.09002 * 109.47103 * 300.00247 * 8 7 6 36 36 H 1.09001 * 109.47066 * 60.00169 * 8 7 6 37 37 H 1.09002 * 109.47153 * 300.00216 * 9 8 7 38 38 H 1.09001 * 109.47289 * 60.00300 * 9 8 7 39 39 H 1.09002 * 109.46935 * 300.00125 * 10 9 8 40 40 H 1.09001 * 109.46812 * 59.99783 * 10 9 8 41 41 H 1.08998 * 109.46820 * 305.85815 * 12 11 10 42 42 H 1.08998 * 109.46015 * 65.82710 * 12 11 10 43 43 H 1.08998 * 109.50567 * 60.76122 * 13 12 11 44 44 H 1.09007 * 109.50182 * 180.88155 * 13 12 11 45 45 H 1.08996 * 109.52205 * 177.56165 * 14 13 12 46 46 H 1.09002 * 109.52210 * 297.68693 * 14 13 12 47 47 H 0.97001 * 119.99658 * 179.97438 * 20 19 17 48 48 H 1.08995 * 109.46149 * 294.17146 * 25 11 10 49 49 H 1.09001 * 109.46185 * 54.14642 * 25 11 10 50 50 H 1.08004 * 126.12839 * 180.22030 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0056 5 7 3.5843 -0.6706 0.0000 6 6 4.7745 -1.5249 0.0005 7 6 5.6714 -1.1506 -1.1811 8 6 6.9146 -2.0423 -1.1804 9 6 7.8113 -1.6684 -2.3624 10 6 9.0543 -2.5606 -2.3619 11 7 9.9154 -2.2012 -3.4965 12 6 10.4580 -0.8461 -3.3368 13 6 11.2282 -0.4516 -4.5990 14 6 12.3637 -1.4521 -4.8318 15 6 11.7762 -2.8614 -4.9463 16 1 11.1107 -2.9092 -5.8082 17 6 12.8924 -3.8595 -5.1165 18 1 13.0261 -4.6490 -4.3918 19 6 13.7430 -3.7648 -6.1975 20 7 13.5804 -2.8031 -7.0800 21 14 15.1261 -5.0023 -6.4090 22 1 14.6404 -6.1560 -7.2079 23 1 16.2641 -4.3575 -7.1120 24 1 15.5735 -5.4773 -5.0750 25 6 10.9901 -3.1861 -3.6740 26 6 2.3031 -1.0942 0.0000 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5138 30 1 1.9951 2.1578 -0.0004 31 1 5.3228 -1.3836 0.9319 32 1 4.4728 -2.5685 -0.0887 33 1 5.1231 -1.2919 -2.1126 34 1 5.9732 -0.1070 -1.0920 35 1 7.4628 -1.9006 -0.2489 36 1 6.6132 -3.0860 -1.2694 37 1 7.2628 -1.8105 -3.2936 38 1 8.1128 -0.6247 -2.2739 39 1 9.6028 -2.4190 -1.4307 40 1 8.7524 -3.6042 -2.4507 41 1 9.6400 -0.1439 -3.1762 42 1 11.1301 -0.8228 -2.4791 43 1 10.5535 -0.4614 -5.4550 44 1 11.6440 0.5483 -4.4740 45 1 12.8881 -1.2000 -5.7534 46 1 13.0603 -1.4138 -3.9942 47 1 14.1790 -2.7364 -7.8403 48 1 11.6597 -3.1517 -2.8147 49 1 10.5585 -4.1834 -3.7584 50 1 1.9724 -2.1223 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595616632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:39:32 Heat of formation + Delta-G solvation = 31.995141 kcal Electronic energy + Delta-G solvation = -24142.859552 eV Core-core repulsion = 20783.679232 eV Total energy + Delta-G solvation = -3359.180321 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.06985 -39.93704 -37.30519 -35.73101 -34.33658 -33.12313 -32.38280 -31.72504 -30.40825 -27.65201 -26.93022 -26.06273 -24.36911 -23.39370 -22.64445 -21.74063 -21.43029 -20.93540 -20.36672 -18.42016 -17.70079 -16.92151 -16.81937 -16.31866 -16.14838 -15.56835 -15.45913 -15.11198 -14.94673 -14.55291 -14.34518 -14.30548 -14.06754 -13.95858 -13.81431 -13.38770 -13.32560 -13.05368 -12.87541 -12.78442 -12.72388 -12.58605 -12.53123 -12.13807 -12.06724 -11.89986 -11.78602 -11.70870 -11.42282 -11.37925 -11.31555 -10.80282 -10.66281 -10.38261 -10.34381 -9.18958 -9.12185 -8.08388 -6.23006 1.01097 1.41030 1.41220 1.51619 1.67772 1.90237 2.42268 3.07722 3.18312 3.56125 3.88021 3.96997 4.00715 4.09661 4.17926 4.20052 4.29444 4.34249 4.42468 4.47726 4.52453 4.55711 4.61291 4.65470 4.69949 4.78268 4.81591 4.88895 4.92465 4.94237 4.97729 5.01236 5.04016 5.10217 5.18171 5.20685 5.27980 5.34814 5.36592 5.41408 5.46527 5.52228 5.62681 5.81138 5.96153 6.11770 6.21072 6.21184 6.40079 6.45719 6.80272 6.89783 7.44933 8.96235 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.039307 B = 0.001830 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.172262 B =15299.242654 C =15589.893802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.261 4.261 3 C 0.033 3.967 4 N -0.338 5.338 5 N -0.378 5.378 6 C 0.130 3.870 7 C -0.118 4.118 8 C -0.104 4.104 9 C -0.107 4.107 10 C 0.056 3.944 11 N -0.553 5.553 12 C 0.066 3.934 13 C -0.112 4.112 14 C -0.103 4.103 15 C 0.050 3.950 16 H -0.004 1.004 17 C -0.537 4.537 18 H 0.052 0.948 19 C 0.013 3.987 20 N -0.916 5.916 21 Si 0.956 3.044 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.268 1.268 25 C 0.082 3.918 26 C 0.049 3.951 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.196 0.804 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.031 0.969 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.023 0.977 43 H 0.049 0.951 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.021 0.979 47 H 0.260 0.740 48 H 0.014 0.986 49 H 0.057 0.943 50 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.777 3.483 16.460 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.272 4.272 3 C -0.153 4.153 4 N -0.160 5.160 5 N -0.160 5.160 6 C 0.010 3.990 7 C -0.157 4.157 8 C -0.143 4.143 9 C -0.145 4.145 10 C -0.071 4.071 11 N -0.277 5.277 12 C -0.062 4.062 13 C -0.150 4.150 14 C -0.142 4.142 15 C 0.032 3.968 16 H 0.014 0.986 17 C -0.576 4.576 18 H 0.070 0.930 19 C -0.186 4.186 20 N -0.555 5.555 21 Si 0.782 3.218 22 H -0.201 1.201 23 H -0.209 1.209 24 H -0.193 1.193 25 C -0.045 4.045 26 C -0.098 4.098 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.213 0.787 31 H 0.106 0.894 32 H 0.143 0.857 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.042 0.958 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.040 0.960 47 H 0.069 0.931 48 H 0.032 0.968 49 H 0.076 0.924 50 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -22.621 3.804 15.894 27.907 hybrid contribution 0.846 -0.665 0.094 1.080 sum -21.775 3.140 15.988 27.196 Atomic orbital electron populations 1.20065 0.87650 1.02860 1.02015 1.20562 0.98473 0.91661 1.16534 1.24246 0.89904 1.01167 0.99936 1.77276 1.22496 0.90511 1.25669 1.48890 1.06510 1.04312 1.56309 1.21990 0.83345 0.93487 1.00172 1.21696 0.96072 1.00376 0.97535 1.21394 0.94528 1.00065 0.98276 1.21504 0.94959 0.99022 0.99006 1.22159 0.93901 1.00166 0.90910 1.61934 1.21117 1.02466 1.42191 1.22043 0.97529 0.90452 0.96151 1.21602 0.97359 0.98431 0.97609 1.21455 0.96487 0.96330 0.99886 1.18607 0.92995 0.93171 0.92069 0.98615 1.21532 1.14240 1.13034 1.08762 0.92975 1.25749 0.99994 0.97358 0.95505 1.70048 1.39156 1.33143 1.13179 0.85589 0.78836 0.79130 0.78282 1.20079 1.20890 1.19294 1.21963 0.91023 0.94267 0.97278 1.22966 0.83747 1.01531 1.01507 0.91650 0.91474 0.91217 0.78692 0.89364 0.85659 0.92275 0.92561 0.90880 0.90068 0.92150 0.92408 0.95050 0.90762 0.89459 0.95844 0.93224 0.91378 0.92392 0.95992 0.93075 0.96825 0.92406 0.78032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.37 71.24 0.74 0.10 16 2 C -0.26 -4.02 6.10 -20.14 -0.12 -4.14 16 3 C 0.03 0.61 11.96 85.24 1.02 1.63 16 4 N -0.34 -7.79 12.42 -57.02 -0.71 -8.50 16 5 N -0.38 -6.83 3.68 -348.05 -1.28 -8.11 16 6 C 0.13 1.68 6.51 86.38 0.56 2.24 16 7 C -0.12 -1.92 5.40 30.59 0.17 -1.76 16 8 C -0.10 -1.61 5.21 30.59 0.16 -1.45 16 9 C -0.11 -2.39 5.15 30.60 0.16 -2.23 16 10 C 0.06 1.55 4.96 86.31 0.43 1.97 16 11 N -0.55 -20.18 4.65 -896.38 -4.17 -24.35 16 12 C 0.07 2.28 5.29 86.33 0.46 2.74 16 13 C -0.11 -4.48 6.09 30.65 0.19 -4.29 16 14 C -0.10 -5.11 5.02 30.67 0.15 -4.96 16 15 C 0.05 2.64 2.27 -11.49 -0.03 2.61 16 16 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 17 C -0.54 -30.36 8.56 25.60 0.22 -30.14 16 18 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 19 C 0.01 0.71 5.30 84.65 0.45 1.16 16 20 N -0.92 -54.09 11.35 21.45 0.24 -53.84 16 21 Si 0.96 44.21 29.54 68.60 2.03 46.23 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 C 0.08 3.56 4.68 86.33 0.40 3.97 16 26 C 0.05 0.70 11.36 83.54 0.95 1.64 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.20 2.58 8.06 -2.91 -0.02 2.55 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.13 0.85 8.07 -2.39 -0.02 0.83 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 1.35 6.44 -2.39 -0.02 1.33 16 39 H 0.03 0.83 8.12 -2.39 -0.02 0.81 16 40 H 0.07 1.96 7.98 -2.39 -0.02 1.94 16 41 H 0.09 2.58 6.22 -2.39 -0.01 2.56 16 42 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 45 H 0.06 3.23 6.15 -2.39 -0.01 3.22 16 46 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 48 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.06 2.46 8.01 -2.39 -0.02 2.44 16 50 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -68.95 392.50 2.88 -66.07 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.87 Total: 13.40 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 5.90 Total: -30.90 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -5.92 Total: -94.80 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -68.95 2.88 -66.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.068 kcal (2) G-P(sol) polarization free energy of solvation -68.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds