Wall clock time and date at job start Fri Apr 10 2020 21:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99995 * 2 1 4 4 H 1.48507 * 109.47362 * 266.87802 * 3 2 1 5 5 H 1.48504 * 109.47268 * 26.87962 * 3 2 1 6 6 H 1.48498 * 109.47270 * 146.87757 * 3 2 1 7 7 C 1.37879 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00259 * 352.96635 * 7 2 1 9 9 C 1.50703 * 119.99934 * 172.97113 * 7 2 1 10 10 O 1.42902 * 110.63785 * 325.95687 * 9 7 2 11 11 C 1.55160 * 110.71781 * 89.09633 * 9 7 2 12 12 C 1.55386 * 101.36062 * 153.94973 * 11 9 7 13 13 N 1.47428 * 104.87632 * 323.01474 * 12 11 9 14 14 C 1.34778 * 125.64757 * 204.17038 * 13 12 11 15 15 O 1.21722 * 120.00032 * 4.81044 * 14 13 12 16 16 C 1.46490 * 119.99731 * 184.80552 * 14 13 12 17 17 C 1.36113 * 125.71334 * 182.68646 * 16 14 13 18 18 C 1.42225 * 107.62803 * 179.85568 * 17 16 14 19 19 C 1.45593 * 140.77743 * 180.09268 * 18 17 16 20 20 C 1.31817 * 114.62853 * 180.32824 * 19 18 17 21 21 S 1.75343 * 111.24543 * 0.02879 * 20 19 18 22 22 C 1.38175 * 106.99453 * 0.40664 * 18 17 16 23 23 N 1.37458 * 108.16774 * 359.75699 * 22 18 17 24 24 H 0.97000 * 125.68532 * 179.97438 * 23 22 18 25 25 C 1.47017 * 108.70043 * 24.13597 * 13 12 11 26 26 H 0.97003 * 120.00056 * 0.02562 * 1 2 3 27 27 H 0.96698 * 114.00194 * 295.36018 * 10 9 7 28 28 H 1.09001 * 111.00552 * 272.11634 * 11 9 7 29 29 H 1.08995 * 111.00560 * 35.97158 * 11 9 7 30 30 H 1.09009 * 110.34096 * 204.16689 * 12 11 9 31 31 H 1.08999 * 110.44584 * 81.92104 * 12 11 9 32 32 H 1.08006 * 126.18405 * 359.97438 * 17 16 14 33 33 H 1.07997 * 122.68693 * 0.30926 * 19 18 17 34 34 H 1.08001 * 124.36958 * 179.97438 * 20 19 18 35 35 H 1.09007 * 109.88443 * 239.52288 * 25 13 12 36 36 H 1.09001 * 110.01377 * 118.43117 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5627 2.0083 -1.3980 5 1 1.4151 2.6708 0.6330 6 1 3.5121 1.4601 0.7650 7 6 2.0045 -1.1941 -0.0005 8 1 1.4706 -2.1259 0.1136 9 6 3.5030 -1.1990 -0.1602 10 8 3.9209 -0.1400 -1.0240 11 6 4.2025 -1.0897 1.2204 12 6 5.5655 -1.7764 0.9282 13 7 5.2424 -2.8830 0.0091 14 6 5.9730 -4.0030 -0.1591 15 8 6.9483 -4.2044 0.5408 16 6 5.5931 -4.9782 -1.1842 17 6 6.2134 -6.1668 -1.4188 18 6 5.5306 -6.8047 -2.4910 19 6 5.5689 -8.0236 -3.2864 20 6 4.6392 -8.1013 -4.2176 21 16 3.6158 -6.6775 -4.2141 22 6 4.5090 -5.9592 -2.8791 23 7 4.5492 -4.8426 -2.0784 24 1 3.9453 -4.0855 -2.1326 25 6 3.9910 -2.5627 -0.6928 26 1 -0.4850 0.8401 -0.0004 27 1 3.6070 -0.2278 -1.9343 28 1 4.3402 -0.0472 1.5073 29 1 3.6466 -1.6334 1.9842 30 1 6.0001 -2.1634 1.8499 31 1 6.2506 -1.0753 0.4517 32 1 7.0683 -6.5560 -0.8857 33 1 6.3006 -8.8016 -3.1264 34 1 4.5234 -8.9340 -4.8955 35 1 3.2440 -3.3296 -0.4875 36 1 4.1710 -2.4987 -1.7659 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592837726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:38:32 Heat of formation + Delta-G solvation = 4.129300 kcal Electronic energy + Delta-G solvation = -22750.164856 eV Core-core repulsion = 19327.311108 eV Total energy + Delta-G solvation = -3422.853749 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 306.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.39967 -39.45515 -37.74183 -35.44659 -34.87600 -32.54260 -30.88164 -30.49683 -28.94539 -28.00941 -25.60285 -23.70316 -22.97376 -21.35083 -20.27678 -20.04722 -19.29654 -18.46809 -17.65546 -16.57888 -15.85950 -15.61886 -15.16866 -15.08501 -14.70050 -14.62253 -14.50794 -13.80373 -13.56963 -13.32094 -12.99678 -12.82395 -12.47138 -12.30283 -11.93258 -11.86922 -11.71639 -11.62729 -11.17086 -10.88327 -10.68046 -10.52483 -10.33376 -9.97140 -9.54351 -9.39796 -8.85768 -8.68657 -8.47480 -8.32061 -7.70717 -6.35620 -4.50068 1.02687 1.28226 1.37186 1.91808 2.83313 3.00817 3.25598 3.33626 3.41747 3.47554 3.55434 4.34197 4.46781 4.73129 4.81655 4.92592 4.95089 5.21303 5.29927 5.35782 5.49887 5.63270 5.65604 5.69485 5.88791 5.99284 6.01422 6.11028 6.27012 6.39811 6.52942 6.64186 6.70127 6.87931 7.14469 7.23308 7.65428 7.93305 8.21230 8.42363 8.62159 9.24489 10.72823 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.018736 B = 0.004366 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.107757 B = 6411.310482 C = 7563.054885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.079 3.921 3 Si 0.944 3.056 4 H -0.290 1.290 5 H -0.322 1.322 6 H -0.266 1.266 7 C -0.562 4.562 8 H 0.081 0.919 9 C 0.224 3.776 10 O -0.560 6.560 11 C -0.123 4.123 12 C 0.106 3.894 13 N -0.609 5.609 14 C 0.598 3.402 15 O -0.536 6.536 16 C 0.002 3.998 17 C -0.076 4.076 18 C -0.166 4.166 19 C -0.070 4.070 20 C -0.226 4.226 21 S 0.132 5.868 22 C -0.011 4.011 23 N -0.524 5.524 24 H 0.426 0.574 25 C 0.070 3.930 26 H 0.269 0.731 27 H 0.371 0.629 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.156 0.844 33 H 0.143 0.857 34 H 0.169 0.831 35 H 0.078 0.922 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.294 -11.346 -7.403 15.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.127 4.127 3 Si 0.778 3.222 4 H -0.217 1.217 5 H -0.253 1.253 6 H -0.192 1.192 7 C -0.599 4.599 8 H 0.099 0.901 9 C 0.184 3.816 10 O -0.368 6.368 11 C -0.161 4.161 12 C -0.016 4.016 13 N -0.341 5.341 14 C 0.387 3.613 15 O -0.414 6.414 16 C -0.111 4.111 17 C -0.104 4.104 18 C -0.178 4.178 19 C -0.100 4.100 20 C -0.360 4.360 21 S 0.385 5.615 22 C -0.241 4.241 23 N -0.133 5.133 24 H 0.272 0.728 25 C -0.054 4.054 26 H 0.078 0.922 27 H 0.219 0.781 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.173 0.827 33 H 0.161 0.839 34 H 0.186 0.814 35 H 0.096 0.904 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.678 -10.623 -7.295 15.000 hybrid contribution 0.773 0.504 0.144 0.934 sum 8.451 -10.119 -7.151 14.998 Atomic orbital electron populations 1.69952 1.06859 1.28086 1.46732 1.25086 0.94853 1.00477 0.92281 0.85807 0.78121 0.80094 0.78176 1.21698 1.25274 1.19179 1.21133 0.88279 0.95616 1.54842 0.90124 1.20053 0.94299 0.80381 0.86873 1.86185 1.77889 1.48885 1.23794 1.23271 0.93070 1.01468 0.98274 1.22460 0.98708 0.87425 0.92959 1.48469 1.24703 1.18595 1.42363 1.16612 0.82651 0.79670 0.82378 1.90827 1.27661 1.76347 1.46588 1.20054 0.94373 0.99131 0.97590 1.20665 1.00435 0.92271 0.97022 1.19376 0.99891 0.96199 1.02342 1.20304 0.99187 0.96090 0.94446 1.24859 1.01978 1.02852 1.06262 1.83987 1.34094 1.13171 1.30215 1.23629 1.04421 0.93591 1.02457 1.42375 1.27419 1.16814 1.26653 0.72833 1.23221 0.84849 1.02137 0.95153 0.92157 0.78056 0.89388 0.89472 0.90814 0.91383 0.82680 0.83907 0.81381 0.90360 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.74 13.96 55.43 0.77 -23.97 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.94 21.81 24.88 -169.99 -4.23 17.58 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.32 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.27 -5.98 5.18 56.52 0.29 -5.69 16 7 C -0.56 -13.72 8.81 -34.44 -0.30 -14.02 16 8 H 0.08 2.15 7.80 -52.49 -0.41 1.74 16 9 C 0.22 4.51 0.67 -89.94 -0.06 4.45 16 10 O -0.56 -10.98 8.73 -35.23 -0.31 -11.28 16 11 C -0.12 -2.33 5.91 -24.32 -0.14 -2.47 16 12 C 0.11 1.84 6.94 -2.27 -0.02 1.82 16 13 N -0.61 -10.69 3.33 -171.82 -0.57 -11.27 16 14 C 0.60 10.72 7.80 -12.94 -0.10 10.62 16 15 O -0.54 -10.74 17.08 5.17 0.09 -10.65 16 16 C 0.00 0.03 6.81 -82.47 -0.56 -0.53 16 17 C -0.08 -1.12 10.59 -38.82 -0.41 -1.53 16 18 C -0.17 -2.27 6.80 -105.46 -0.72 -2.98 16 19 C -0.07 -0.74 10.42 -38.55 -0.40 -1.14 16 20 C -0.23 -2.15 11.03 28.84 0.32 -1.83 16 21 S 0.13 1.46 23.24 -107.50 -2.50 -1.04 16 22 C -0.01 -0.16 8.41 -15.05 -0.13 -0.29 16 23 N -0.52 -7.70 5.71 -7.94 -0.05 -7.75 16 24 H 0.43 5.94 4.89 -40.82 -0.20 5.74 16 25 C 0.07 1.21 4.47 -3.07 -0.01 1.19 16 26 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 27 H 0.37 6.24 8.99 45.56 0.41 6.65 16 28 H 0.09 1.71 6.23 -51.93 -0.32 1.38 16 29 H 0.09 1.66 8.04 -51.93 -0.42 1.24 16 30 H 0.07 1.22 7.99 -51.92 -0.41 0.81 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.16 2.06 8.06 -52.48 -0.42 1.63 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.08 1.38 7.13 -51.93 -0.37 1.01 16 36 H 0.06 0.87 6.50 -51.93 -0.34 0.53 16 LS Contribution 308.65 15.07 4.65 4.65 Total: -1.00 -30.21 308.65 -7.77 -37.99 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -3.00 Total: 10.48 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -2.64 Total: -4.74 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.16 Total: -42.98 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.22 Total: -21.94 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.23 Total: 17.58 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.50 Total: -1.04 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.21 -7.77 -37.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.116 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds