Wall clock time and date at job start Fri Apr 10 2020 21:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35136 * 126.43854 * 2 1 4 4 O 1.33935 * 108.76388 * 179.97438 * 3 2 1 5 5 C 1.34912 * 109.38758 * 359.97438 * 4 3 2 6 6 C 1.46650 * 125.98735 * 180.02562 * 5 4 3 7 7 O 1.21693 * 120.00042 * 173.13004 * 6 5 4 8 8 N 1.34781 * 120.00361 * 353.12567 * 6 5 4 9 9 C 1.44959 * 117.32082 * 3.66471 * 8 6 5 10 10 C 1.51776 * 111.99682 * 203.54278 * 9 8 6 11 11 O 1.41315 * 111.63324 * 319.66910 * 10 9 8 12 12 C 1.40782 * 118.40238 * 56.76899 * 11 10 9 13 13 H 1.09000 * 109.35258 * 188.30990 * 12 11 10 14 14 C 1.54202 * 110.22614 * 67.70326 * 12 11 10 15 15 N 1.46875 * 106.39197 * 210.33871 * 14 12 11 16 16 C 1.36941 * 125.36388 * 197.81804 * 15 14 12 17 17 H 1.08000 * 119.99777 * 180.02562 * 16 15 14 18 18 C 1.38815 * 120.00032 * 0.02778 * 16 15 14 19 19 N 1.31613 * 119.99654 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00016 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47259 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47144 * 119.99537 * 20 18 16 23 23 H 1.48495 * 109.47381 * 239.99858 * 20 18 16 24 24 C 1.46783 * 109.27156 * 17.83860 * 15 14 12 25 25 C 1.44540 * 117.32610 * 183.92300 * 8 6 5 26 26 H 1.08998 * 109.48672 * 285.85703 * 25 8 6 27 27 C 1.36543 * 108.02204 * 0.02562 * 5 4 3 28 28 H 1.08999 * 109.47218 * 269.99966 * 1 2 3 29 29 H 1.08998 * 109.47354 * 30.00315 * 1 2 3 30 30 H 1.09005 * 109.46971 * 150.00590 * 1 2 3 31 31 H 1.07994 * 125.62162 * 359.97438 * 3 2 1 32 32 H 1.09005 * 108.99852 * 324.33152 * 9 8 6 33 33 H 1.09003 * 108.99799 * 83.08969 * 9 8 6 34 34 H 1.09002 * 109.15219 * 199.01856 * 10 9 8 35 35 H 1.08996 * 108.82556 * 80.10115 * 10 9 8 36 36 H 1.09004 * 110.07246 * 91.10756 * 14 12 11 37 37 H 1.08997 * 110.11636 * 329.59505 * 14 12 11 38 38 H 0.97006 * 119.99945 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.83133 * 239.35634 * 24 15 14 40 40 H 1.09004 * 109.82807 * 118.39042 * 24 15 14 41 41 H 1.08001 * 126.64808 * 179.74033 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0872 0.0000 4 8 3.5857 0.6805 0.0006 5 6 3.6261 -0.6680 0.0015 6 6 4.8379 -1.4939 0.0029 7 8 4.7514 -2.7011 0.1297 8 7 6.0475 -0.9159 -0.1364 9 6 6.0898 0.5316 -0.2015 10 6 7.3371 1.0328 -0.9063 11 8 8.4777 0.2814 -0.5439 12 6 8.4547 -1.1114 -0.7481 13 1 9.3357 -1.5586 -0.2876 14 6 8.4409 -1.4288 -2.2571 15 7 7.7085 -2.6929 -2.4080 16 6 7.7517 -3.5075 -3.5080 17 1 7.1755 -4.4207 -3.5265 18 6 8.5362 -3.1594 -4.5990 19 7 9.2380 -2.0462 -4.5765 20 14 8.5957 -4.2709 -6.0991 21 1 7.7241 -5.4521 -5.8749 22 1 8.1186 -3.5220 -7.2894 23 1 9.9920 -4.7226 -6.3255 24 6 6.9224 -2.9453 -1.1943 25 6 7.1957 -1.7905 -0.2144 26 1 7.4115 -2.1963 0.7740 27 6 2.3408 -1.1291 0.0010 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 1.9770 2.1146 -0.0004 32 1 5.2101 0.8885 -0.7373 33 1 6.0734 0.9330 0.8118 34 1 7.5008 2.0779 -0.6434 35 1 7.1874 0.9559 -1.9832 36 1 9.4608 -1.5412 -2.6251 37 1 7.9321 -0.6342 -2.8026 38 1 9.7859 -1.8027 -5.3390 39 1 7.2277 -3.8907 -0.7460 40 1 5.8612 -2.9774 -1.4412 41 1 2.0266 -2.1624 -0.0025 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083170921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:40:29 Heat of formation + Delta-G solvation = -3.762450 kcal Electronic energy + Delta-G solvation = -26371.287003 eV Core-core repulsion = 22641.171266 eV Total energy + Delta-G solvation = -3730.115737 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.88088 -40.61841 -38.34722 -35.92783 -35.13880 -34.16289 -32.43859 -30.64318 -30.05113 -28.07152 -27.82423 -27.00943 -24.81145 -23.42465 -23.12714 -21.17487 -20.79569 -19.62436 -18.79389 -17.58901 -17.27356 -16.80660 -16.63044 -16.33090 -15.30334 -15.07637 -14.91689 -14.64218 -14.30573 -13.88839 -13.70321 -13.46755 -13.37006 -13.19480 -12.84675 -12.81579 -12.46309 -12.16579 -12.02923 -11.89384 -11.29082 -11.10862 -10.89186 -10.72017 -10.46902 -10.44350 -10.07657 -9.82402 -9.75989 -9.66501 -9.06986 -8.71037 -8.61636 -8.28465 -6.82206 -5.68017 -3.06697 1.04065 2.19675 2.59036 3.04899 3.25917 3.40684 3.46497 3.49218 4.10507 4.36146 4.50400 4.62005 4.77966 4.86813 5.00147 5.17998 5.22422 5.37248 5.38507 5.42368 5.48822 5.55501 5.60275 5.69195 5.70458 5.78714 5.79638 5.94736 5.98388 6.10765 6.21976 6.28095 6.49065 6.70477 6.82731 7.05475 7.33950 7.36382 7.60711 7.73147 7.87304 8.15993 8.30848 9.21712 9.81877 10.44173 11.38893 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.016456 B = 0.004567 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.102245 B = 6129.429282 C = 6933.364219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.192 4.192 3 C -0.024 4.024 4 O -0.156 6.156 5 C -0.065 4.065 6 C 0.591 3.409 7 O -0.507 6.507 8 N -0.576 5.576 9 C 0.070 3.930 10 C 0.059 3.941 11 O -0.369 6.369 12 C 0.069 3.931 13 H 0.116 0.884 14 C 0.139 3.861 15 N -0.603 5.603 16 C -0.221 4.221 17 H 0.080 0.920 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.915 3.085 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.129 3.871 25 C 0.110 3.890 26 H 0.076 0.924 27 C -0.121 4.121 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.206 0.794 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.022 0.978 38 H 0.252 0.748 39 H 0.037 0.963 40 H 0.051 0.949 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.500 9.753 11.191 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.194 4.194 3 C -0.093 4.093 4 O -0.052 6.052 5 C -0.117 4.117 6 C 0.379 3.621 7 O -0.385 6.385 8 N -0.309 5.309 9 C -0.053 4.053 10 C -0.018 4.018 11 O -0.286 6.286 12 C 0.009 3.991 13 H 0.133 0.867 14 C 0.014 3.986 15 N -0.331 5.331 16 C -0.349 4.349 17 H 0.098 0.902 18 C -0.206 4.206 19 N -0.572 5.572 20 Si 0.745 3.255 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.003 3.997 25 C 0.007 3.993 26 H 0.094 0.906 27 C -0.142 4.142 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.223 0.777 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.040 0.960 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.940 9.377 11.135 18.828 hybrid contribution -0.491 -0.535 -0.967 1.209 sum -12.431 8.842 10.168 18.333 Atomic orbital electron populations 1.20174 0.88790 1.02830 1.02166 1.20460 0.97582 0.92444 1.08882 1.24269 0.80823 0.99973 1.04265 1.84365 1.28355 1.21857 1.70600 1.22155 0.96238 0.80428 1.12874 1.16788 0.81132 0.86361 0.77828 1.90874 1.85535 1.12484 1.49569 1.46652 1.06275 1.06715 1.71227 1.21941 1.01121 0.80074 1.02115 1.22202 0.84611 0.95523 0.99451 1.86850 1.37736 1.18813 1.85231 1.23088 0.95815 0.79925 1.00235 0.86666 1.22075 1.00583 0.87847 0.88091 1.44271 1.51680 1.22953 1.14195 1.19133 1.22746 1.01367 0.91701 0.90223 1.24794 0.99636 0.97733 0.98422 1.69874 1.33152 1.23741 1.30424 0.85989 0.77349 0.79564 0.82578 1.20465 1.21804 1.21675 1.21676 0.97142 0.93862 0.87054 1.21660 0.86003 0.91514 1.00173 0.90639 1.21816 0.90498 1.00566 1.01285 0.91381 0.91536 0.91288 0.77727 0.88338 0.91481 0.87740 0.92281 0.88211 0.96007 0.93766 0.94463 0.93109 0.82352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.39 36.00 0.37 -0.24 16 2 C -0.19 -2.02 6.14 -104.93 -0.64 -2.67 16 3 C -0.02 -0.23 12.00 29.63 0.36 0.13 16 4 O -0.16 -1.94 7.06 4.99 0.04 -1.90 16 5 C -0.07 -0.98 6.69 -36.80 -0.25 -1.23 16 6 C 0.59 10.68 6.84 -12.86 -0.09 10.60 16 7 O -0.51 -10.41 14.28 5.19 0.07 -10.34 16 8 N -0.58 -10.19 3.09 -170.67 -0.53 -10.72 16 9 C 0.07 1.02 5.40 -5.49 -0.03 0.99 16 10 C 0.06 0.90 6.73 36.54 0.25 1.14 16 11 O -0.37 -6.67 10.25 -34.35 -0.35 -7.02 16 12 C 0.07 1.36 3.91 -26.26 -0.10 1.25 16 13 H 0.12 2.14 8.14 -51.93 -0.42 1.71 16 14 C 0.14 3.44 5.26 -3.21 -0.02 3.42 16 15 N -0.60 -15.99 3.39 -171.41 -0.58 -16.57 16 16 C -0.22 -6.35 10.25 -15.06 -0.15 -6.50 16 17 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 18 C -0.01 -0.30 5.48 -17.43 -0.10 -0.39 16 19 N -0.92 -27.16 10.18 55.49 0.56 -26.60 16 20 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 24 C 0.13 2.96 6.06 -3.42 -0.02 2.94 16 25 C 0.11 2.14 3.28 -68.67 -0.23 1.92 16 26 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 27 C -0.12 -1.62 10.58 -39.40 -0.42 -2.04 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.21 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.10 1.34 4.99 -51.98 -0.26 1.09 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.01 6.73 -51.93 -0.35 0.66 16 36 H 0.10 2.75 6.25 -51.93 -0.32 2.43 16 37 H 0.02 0.59 6.48 -51.93 -0.34 0.25 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 1.26 5.43 -51.93 -0.28 0.97 16 41 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -33.30 325.39 -7.30 -40.60 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.33 Total: 0.87 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -1.06 Total: 9.32 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.54 Total: -53.88 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.24 Total: -19.26 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.30 -7.30 -40.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083170921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.836 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds