Wall clock time and date at job start Fri Apr 10 2020 21:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48503 * 109.46845 * 240.00072 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00168 * 3 2 1 7 7 C 1.37875 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99956 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47457 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47432 * 179.97438 * 10 9 7 12 12 C 1.34774 * 120.00140 * 179.97438 * 11 10 9 13 13 O 1.21586 * 120.00102 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00176 * 180.02562 * 12 11 10 15 15 C 1.47429 * 125.64685 * 0.02660 * 14 12 11 16 16 C 1.54915 * 104.83087 * 204.09266 * 15 14 12 17 17 C 1.55160 * 101.57920 * 322.98945 * 16 15 14 18 18 C 1.47023 * 125.64871 * 179.71505 * 14 12 11 19 19 H 1.08994 * 109.88022 * 59.56089 * 18 14 12 20 20 C 1.50696 * 109.88387 * 298.39279 * 18 14 12 21 21 C 1.38239 * 119.97619 * 321.18416 * 20 18 14 22 22 C 1.38198 * 120.02602 * 179.72730 * 21 20 18 23 23 C 1.38460 * 119.97326 * 0.56389 * 22 21 20 24 24 F 1.35100 * 120.02529 * 179.68822 * 23 22 21 25 25 C 1.38455 * 119.94881 * 359.70519 * 23 22 21 26 26 C 1.38202 * 119.97656 * 0.02562 * 25 23 22 27 27 H 0.97000 * 119.99806 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46948 * 299.99717 * 9 7 2 29 29 H 1.09004 * 109.47662 * 59.99483 * 9 7 2 30 30 H 1.09001 * 109.47194 * 300.00036 * 10 9 7 31 31 H 1.09000 * 109.46968 * 59.99837 * 10 9 7 32 32 H 0.97005 * 120.00064 * 0.02562 * 11 10 9 33 33 H 1.08999 * 110.36697 * 322.92881 * 15 14 12 34 34 H 1.08991 * 110.36926 * 85.25408 * 15 14 12 35 35 H 1.08997 * 111.00717 * 81.05778 * 16 15 14 36 36 H 1.08997 * 111.00661 * 204.87832 * 16 15 14 37 37 H 1.08998 * 110.71877 * 153.86986 * 17 16 15 38 38 H 1.09006 * 110.72102 * 276.95903 * 17 16 15 39 39 H 1.07998 * 119.98961 * 359.96956 * 21 20 18 40 40 H 1.08008 * 120.01658 * 180.25473 * 22 21 20 41 41 H 1.08000 * 120.01483 * 179.97438 * 25 23 22 42 42 H 1.07995 * 119.99261 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0979 0.0007 13 8 3.4027 -6.0979 0.0003 14 7 1.5130 -7.2651 0.0008 15 6 0.0459 -7.4103 0.0007 16 6 -0.2142 -8.8097 0.6121 17 6 0.9659 -9.6295 0.0267 18 6 2.1193 -8.6045 -0.0056 19 1 2.7493 -8.7304 0.8749 20 6 2.9387 -8.7903 -1.2565 21 6 2.4855 -8.2845 -2.4606 22 6 3.2388 -8.4493 -3.6074 23 6 4.4424 -9.1315 -3.5523 24 9 5.1767 -9.2988 -4.6739 25 6 4.8927 -9.6425 -2.3468 26 6 4.1403 -9.4717 -1.2002 27 1 -0.4850 -0.8401 0.0004 28 1 0.6242 -2.5567 0.8903 29 1 0.6247 -2.5571 -0.8896 30 1 2.8720 -3.6043 -0.8895 31 1 2.8720 -3.6043 0.8905 32 1 0.5429 -4.9308 0.0011 33 1 -0.4119 -6.6362 0.6166 34 1 -0.3399 -7.3636 -1.0176 35 1 -0.1644 -8.7760 1.7004 36 1 -1.1718 -9.2098 0.2790 37 1 1.2115 -10.4697 0.6762 38 1 0.7321 -9.9774 -0.9796 39 1 1.5441 -7.7569 -2.5044 40 1 2.8865 -8.0505 -4.5473 41 1 5.8312 -10.1752 -2.3027 42 1 4.4911 -9.8705 -0.2599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273607039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:42:22 Heat of formation + Delta-G solvation = -58.091777 kcal Electronic energy + Delta-G solvation = -24778.925219 eV Core-core repulsion = 21058.826375 eV Total energy + Delta-G solvation = -3720.098844 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.97805 -40.63717 -38.85771 -37.37479 -34.98269 -33.17112 -31.82224 -31.59237 -31.21357 -29.03658 -27.83326 -24.63607 -23.53435 -23.17551 -22.17798 -21.61172 -20.87952 -19.55458 -18.13483 -17.75867 -17.00233 -16.63450 -15.99649 -15.87281 -15.66924 -15.09306 -14.78329 -14.36654 -14.09742 -13.73700 -13.70859 -13.59393 -13.54639 -13.34794 -13.03569 -12.84942 -12.32995 -12.22458 -12.14802 -11.61151 -11.54192 -11.39285 -11.18265 -11.00994 -10.96038 -10.43385 -10.18070 -9.97745 -9.85930 -9.20914 -8.87911 -8.70972 -8.63691 -8.42313 -8.27422 -6.44240 -4.13905 1.00704 1.13362 2.74443 3.43468 3.45037 3.45419 3.49788 3.63714 4.14151 4.18131 4.28284 4.42369 4.50082 4.54643 4.62218 4.74290 4.79738 5.01223 5.14211 5.17065 5.30181 5.34126 5.38957 5.46071 5.55091 5.61962 5.77563 5.83350 5.87851 5.99810 6.06430 6.12260 6.24414 6.26386 6.43900 6.62487 6.76962 6.87426 7.14641 7.34350 7.35625 8.07931 8.27826 8.38330 8.79651 8.91573 9.57866 10.96910 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.003268 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.117159 B = 8565.420961 C = 9825.920747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.018 3.982 3 Si 1.071 2.929 4 H -0.287 1.287 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.601 4.601 8 H 0.053 0.947 9 C 0.001 3.999 10 C 0.148 3.852 11 N -0.738 5.738 12 C 0.717 3.283 13 O -0.584 6.584 14 N -0.637 5.637 15 C 0.096 3.904 16 C -0.130 4.130 17 C -0.123 4.123 18 C 0.197 3.803 19 H 0.083 0.917 20 C -0.090 4.090 21 C -0.070 4.070 22 C -0.152 4.152 23 C 0.093 3.907 24 F -0.143 7.143 25 C -0.153 4.153 26 C -0.077 4.077 27 H 0.268 0.732 28 H 0.013 0.987 29 H 0.012 0.988 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.391 0.609 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.163 -24.125 -1.858 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.186 4.186 3 Si 0.899 3.101 4 H -0.213 1.213 5 H -0.207 1.207 6 H -0.213 1.213 7 C -0.640 4.640 8 H 0.071 0.929 9 C -0.036 4.036 10 C 0.025 3.975 11 N -0.392 5.392 12 C 0.419 3.581 13 O -0.461 6.461 14 N -0.377 5.377 15 C -0.027 4.027 16 C -0.168 4.168 17 C -0.161 4.161 18 C 0.093 3.907 19 H 0.101 0.899 20 C -0.091 4.091 21 C -0.088 4.088 22 C -0.171 4.171 23 C 0.074 3.926 24 F -0.122 7.122 25 C -0.172 4.172 26 C -0.095 4.095 27 H 0.078 0.922 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.224 0.776 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.639 -22.335 -1.889 22.424 hybrid contribution -0.109 -1.595 -0.282 1.623 sum 0.530 -23.930 -2.171 24.034 Atomic orbital electron populations 1.70805 1.06882 1.30498 1.46458 1.25879 0.96484 1.02794 0.93477 0.83511 0.74869 0.75045 0.76709 1.21306 1.20729 1.21297 1.21884 0.94571 0.91340 1.56207 0.92851 1.19442 0.94883 0.92863 0.96448 1.21430 0.95280 0.79880 1.00877 1.45567 1.09757 1.05187 1.78728 1.15557 0.85066 0.79452 0.78057 1.90916 1.11351 1.85872 1.58009 1.47704 1.06189 1.04138 1.79674 1.22302 0.81396 0.98160 1.00858 1.22762 0.98631 0.94285 1.01128 1.22724 0.93821 0.97083 1.02483 1.20201 0.93850 0.81805 0.94888 0.89874 1.20128 0.95633 0.98244 0.95120 1.20742 0.99572 0.97398 0.91132 1.21111 0.94466 1.01304 1.00222 1.17707 0.91354 1.00893 0.82682 1.91485 1.76532 1.93863 1.50317 1.21061 1.01491 1.03046 0.91566 1.20789 0.93211 0.97717 0.97827 0.92212 0.96926 0.96941 0.92624 0.92623 0.77564 0.90564 0.91557 0.90314 0.89636 0.89620 0.90187 0.85570 0.84928 0.84850 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.36 13.65 55.43 0.76 -26.61 16 2 C 0.02 0.50 5.46 -17.82 -0.10 0.41 16 3 Si 1.07 25.19 29.90 -169.99 -5.08 20.11 16 4 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.60 -17.06 9.11 -34.44 -0.31 -17.37 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.00 0.03 4.40 -27.88 -0.12 -0.10 16 10 C 0.15 3.26 5.61 -4.04 -0.02 3.24 16 11 N -0.74 -13.33 5.52 -65.23 -0.36 -13.69 16 12 C 0.72 12.76 8.13 -86.92 -0.71 12.06 16 13 O -0.58 -12.73 16.19 5.29 0.09 -12.64 16 14 N -0.64 -8.22 2.33 -170.00 -0.40 -8.61 16 15 C 0.10 0.88 6.57 -2.52 -0.02 0.86 16 16 C -0.13 -0.84 7.09 -24.58 -0.17 -1.02 16 17 C -0.12 -0.85 6.47 -24.89 -0.16 -1.01 16 18 C 0.20 2.13 3.04 -68.10 -0.21 1.92 16 19 H 0.08 0.94 8.03 -51.93 -0.42 0.52 16 20 C -0.09 -1.07 4.10 -104.62 -0.43 -1.50 16 21 C -0.07 -0.87 9.14 -39.60 -0.36 -1.23 16 22 C -0.15 -1.87 10.03 -39.51 -0.40 -2.27 16 23 C 0.09 1.17 7.30 -39.42 -0.29 0.88 16 24 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 25 C -0.15 -1.72 10.03 -39.51 -0.40 -2.12 16 26 C -0.08 -0.85 9.68 -39.59 -0.38 -1.23 16 27 H 0.27 7.92 7.22 -40.82 -0.29 7.62 16 28 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 29 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.39 6.10 6.95 -40.82 -0.28 5.81 16 33 H 0.08 0.69 7.30 -51.93 -0.38 0.31 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.53 7.80 -51.93 -0.41 0.13 16 39 H 0.13 1.49 7.69 -52.49 -0.40 1.08 16 40 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 41 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.13 1.14 8.05 -52.49 -0.42 0.72 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -34.16 354.08 -9.72 -43.88 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.02 Total: 2.54 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -4.08 Total: -8.48 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.00 Total: -48.92 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.16 -9.72 -43.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273607039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.216 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds