Wall clock time and date at job start Fri Apr 10 2020 21:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99655 * 2 1 4 4 H 1.48503 * 109.47072 * 239.99512 * 3 2 1 5 5 H 1.48497 * 109.47170 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47121 * 119.99786 * 3 2 1 7 7 C 1.37875 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99579 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00186 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47146 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47042 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47411 * 305.77313 * 11 10 9 13 13 N 1.46900 * 109.47100 * 65.76877 * 11 10 9 14 14 C 1.50691 * 109.47444 * 185.76842 * 11 10 9 15 15 O 1.21296 * 120.00250 * 267.28884 * 14 11 10 16 16 N 1.34783 * 120.00249 * 87.28055 * 14 11 10 17 17 C 1.46929 * 120.55893 * 354.02934 * 16 14 11 18 18 C 1.53421 * 107.78152 * 224.62696 * 17 16 14 19 19 C 1.52841 * 108.87422 * 296.76758 * 18 17 16 20 20 C 1.50597 * 110.50982 * 51.43057 * 19 18 17 21 21 C 1.38514 * 118.90902 * 159.49283 * 20 19 18 22 22 C 1.38305 * 120.28934 * 179.57216 * 21 20 19 23 23 F 1.35102 * 119.95617 * 180.02562 * 22 21 20 24 24 C 1.38505 * 120.09857 * 0.31097 * 22 21 20 25 25 C 1.38034 * 119.87419 * 359.52566 * 24 22 21 26 26 C 1.38556 * 121.50450 * 339.25134 * 20 19 18 27 27 H 0.97001 * 120.00111 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46837 * 59.99742 * 9 7 2 29 29 H 1.08997 * 109.46768 * 300.00200 * 9 7 2 30 30 H 1.08997 * 109.47011 * 59.99929 * 10 9 7 31 31 H 1.08994 * 109.46933 * 300.00094 * 10 9 7 32 32 H 1.00896 * 111.00073 * 59.99486 * 13 11 10 33 33 H 1.00899 * 111.00204 * 183.95771 * 13 11 10 34 34 H 1.09003 * 109.79702 * 344.19916 * 17 16 14 35 35 H 1.09006 * 109.79579 * 104.99892 * 17 16 14 36 36 H 1.09007 * 109.57311 * 56.58435 * 18 17 16 37 37 H 1.09006 * 109.57273 * 176.82272 * 18 17 16 38 38 H 1.09003 * 109.26682 * 291.16783 * 19 18 17 39 39 H 1.08997 * 109.26826 * 171.69581 * 19 18 17 40 40 H 1.08001 * 119.85563 * 359.59666 * 21 20 19 41 41 H 1.07996 * 120.06032 * 179.77255 * 24 22 21 42 42 H 1.07997 * 119.96051 * 180.24311 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 1 0.7788 -5.0011 0.8352 13 7 0.7429 -5.1273 -1.2615 14 6 2.4535 -6.1288 0.1440 15 8 2.8984 -6.6737 -0.8442 16 7 2.8296 -6.5445 1.3697 17 6 2.4028 -5.8128 2.5702 18 6 3.6221 -5.6710 3.4907 19 6 4.0769 -7.0634 3.9267 20 6 4.2526 -7.9601 2.7296 21 6 5.0476 -9.0881 2.8489 22 6 5.2215 -9.9362 1.7702 23 9 5.9979 -11.0348 1.8942 24 6 4.6056 -9.6576 0.5613 25 6 3.8095 -8.5368 0.4375 26 6 3.6348 -7.6833 1.5208 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6042 0.8905 31 1 2.8720 -3.6042 -0.8894 32 1 1.3717 -5.1170 -2.0506 33 1 0.1785 -5.9636 -1.2596 34 1 2.0351 -4.8257 2.2898 35 1 1.6162 -6.3683 3.0810 36 1 4.4300 -5.1748 2.9528 37 1 3.3514 -5.0821 4.3671 38 1 3.3287 -7.4943 4.5921 39 1 5.0255 -6.9821 4.4575 40 1 5.5334 -9.3066 3.7884 41 1 4.7448 -10.3183 -0.2816 42 1 3.3254 -8.3204 -0.5034 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424106607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:43:01 Heat of formation + Delta-G solvation = -57.624445 kcal Electronic energy + Delta-G solvation = -25152.553212 eV Core-core repulsion = 21432.474633 eV Total energy + Delta-G solvation = -3720.078579 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.95151 -41.32438 -38.91068 -36.58604 -35.46385 -33.80191 -32.89808 -30.65077 -30.27355 -29.99837 -26.77393 -25.85725 -24.06496 -23.54690 -22.80213 -20.88687 -20.30233 -19.22142 -17.73428 -17.36519 -17.21343 -16.33711 -15.96377 -15.75814 -15.49783 -15.41323 -15.02382 -14.54715 -14.40659 -14.29949 -13.79416 -13.57584 -13.51925 -13.35900 -13.01684 -12.69666 -12.38667 -12.07720 -11.98740 -11.67348 -11.41082 -11.32198 -11.11416 -10.91558 -10.69578 -10.61769 -10.16379 -9.95083 -9.84073 -9.46227 -9.09472 -9.05170 -8.45957 -8.29338 -7.92639 -5.99185 -4.01803 0.93993 1.06580 2.45548 2.67048 3.32653 3.37698 3.39922 3.46972 4.08304 4.28475 4.45651 4.48829 4.56513 4.68256 4.72715 4.81487 4.93492 5.01926 5.08654 5.28500 5.31411 5.35543 5.37263 5.47355 5.58054 5.64820 5.67366 5.82408 5.91273 5.95742 6.06888 6.17290 6.30016 6.37206 6.55049 6.88376 6.96386 7.11741 7.30775 7.63904 7.68352 7.87562 7.96512 8.05562 8.41554 9.05613 9.61860 11.11563 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.022825 B = 0.003232 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.408260 B = 8660.962303 C = 9250.058521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.525 4.525 8 H 0.052 0.948 9 C 0.033 3.967 10 C -0.098 4.098 11 C 0.081 3.919 12 H 0.102 0.898 13 N -0.805 5.805 14 C 0.485 3.515 15 O -0.527 6.527 16 N -0.552 5.552 17 C 0.093 3.907 18 C -0.136 4.136 19 C -0.078 4.078 20 C -0.091 4.091 21 C -0.134 4.134 22 C 0.069 3.931 23 F -0.145 7.145 24 C -0.135 4.135 25 C -0.125 4.125 26 C 0.152 3.848 27 H 0.261 0.739 28 H 0.036 0.964 29 H 0.013 0.987 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.350 0.650 33 H 0.335 0.665 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.997 -17.957 7.943 20.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.070 0.930 9 C -0.004 4.004 10 C -0.136 4.136 11 C -0.035 4.035 12 H 0.119 0.881 13 N -0.333 5.333 14 C 0.275 3.725 15 O -0.404 6.404 16 N -0.275 5.275 17 C -0.029 4.029 18 C -0.174 4.174 19 C -0.115 4.115 20 C -0.094 4.094 21 C -0.153 4.153 22 C 0.049 3.951 23 F -0.124 7.124 24 C -0.155 4.155 25 C -0.145 4.145 26 C 0.057 3.943 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.165 0.835 33 H 0.147 0.853 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.666 -17.361 7.577 19.772 hybrid contribution 1.309 -0.272 0.033 1.337 sum 6.975 -17.634 7.610 20.433 Atomic orbital electron populations 1.69953 1.05952 1.26630 1.50568 1.24977 0.94800 0.99053 0.95363 0.86713 0.79625 0.83382 0.78580 1.20295 1.21306 1.20328 1.21215 0.92872 0.91245 1.50984 0.93010 1.19009 0.93443 0.89703 0.98269 1.21731 0.99005 0.91889 1.00972 1.21949 0.93393 0.92913 0.95221 0.88055 1.58991 1.26868 1.44352 1.03110 1.23157 0.82381 0.85516 0.81463 1.90454 1.55314 1.56944 1.37669 1.46045 1.48040 1.25297 1.08111 1.22213 0.97390 0.98449 0.84842 1.21878 0.98251 0.96922 1.00352 1.20439 1.02686 0.93776 0.94574 1.19325 0.98403 0.96860 0.94844 1.20793 1.01234 0.94750 0.98556 1.17618 0.96081 0.86019 0.95376 1.91472 1.72945 1.51361 1.96624 1.21113 0.98990 0.98882 0.96489 1.22078 0.99145 0.92377 1.00880 1.17854 0.94195 0.87990 0.94245 0.92974 0.94604 0.96829 0.92718 0.92472 0.83524 0.85314 0.87185 0.90316 0.90488 0.88987 0.90054 0.89910 0.84677 0.84687 0.80879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.03 0.80 4.87 -27.88 -0.14 0.66 16 10 C -0.10 -1.86 4.48 -26.73 -0.12 -1.98 16 11 C 0.08 1.26 2.28 -68.87 -0.16 1.10 16 12 H 0.10 1.46 6.85 -51.93 -0.36 1.11 16 13 N -0.80 -12.49 8.54 -5.66 -0.05 -12.54 16 14 C 0.49 7.30 6.74 -10.99 -0.07 7.22 16 15 O -0.53 -8.88 12.99 5.54 0.07 -8.80 16 16 N -0.55 -7.22 2.97 -112.83 -0.34 -7.56 16 17 C 0.09 0.97 5.90 -3.59 -0.02 0.95 16 18 C -0.14 -1.23 6.11 -26.59 -0.16 -1.40 16 19 C -0.08 -0.65 5.78 -28.01 -0.16 -0.81 16 20 C -0.09 -1.02 5.76 -104.45 -0.60 -1.62 16 21 C -0.13 -1.43 9.64 -39.45 -0.38 -1.81 16 22 C 0.07 0.82 7.29 -39.46 -0.29 0.54 16 23 F -0.15 -1.76 17.26 2.25 0.04 -1.72 16 24 C -0.14 -1.64 10.03 -39.56 -0.40 -2.03 16 25 C -0.13 -1.70 8.87 -39.37 -0.35 -2.05 16 26 C 0.15 2.01 6.31 -83.58 -0.53 1.48 16 27 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.04 0.95 7.78 -51.93 -0.40 0.55 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.98 7.14 -51.93 -0.37 0.61 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.35 5.51 8.55 -39.29 -0.34 5.17 16 33 H 0.33 4.39 9.06 -39.29 -0.36 4.04 16 34 H 0.11 1.24 5.01 -51.93 -0.26 0.98 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.59 8.12 -51.93 -0.42 0.16 16 40 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.17 2.57 4.97 -53.62 -0.27 2.31 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -31.10 343.05 -8.87 -39.97 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.69 Total: 7.51 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -3.79 Total: -12.82 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.35 Total: -45.52 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.80 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.10 -8.87 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424106607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.653 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds