Wall clock time and date at job start Fri Apr 10 2020 21:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37855 * 119.94188 * 2 1 4 4 C 1.39625 * 119.88103 * 179.71964 * 3 2 1 5 5 C 1.47726 * 120.12126 * 180.29743 * 4 3 2 6 6 O 1.21565 * 119.99925 * 0.29926 * 5 4 3 7 7 N 1.34780 * 119.99969 * 180.30492 * 5 4 3 8 8 C 1.46504 * 119.99802 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46902 * 185.93416 * 8 7 5 10 10 H 1.08997 * 109.87368 * 300.92399 * 9 8 7 11 11 C 1.54327 * 109.87937 * 179.90404 * 9 8 7 12 12 C 1.55156 * 102.94044 * 218.39138 * 11 9 8 13 13 C 1.54909 * 101.58328 * 35.50345 * 12 11 9 14 14 N 1.47025 * 109.88015 * 62.10252 * 9 8 7 15 15 C 1.36937 * 125.64707 * 298.33154 * 14 9 8 16 16 H 1.08004 * 119.99662 * 335.93247 * 15 14 9 17 17 C 1.38813 * 120.00058 * 155.93266 * 15 14 9 18 18 N 1.31616 * 119.99764 * 159.49032 * 17 15 14 19 19 Si 1.86796 * 120.00066 * 339.48555 * 17 15 14 20 20 H 1.48501 * 109.46857 * 84.67733 * 19 17 15 21 21 H 1.48494 * 109.47374 * 204.67865 * 19 17 15 22 22 H 1.48497 * 109.47081 * 324.68042 * 19 17 15 23 23 C 1.39679 * 119.76067 * 0.60233 * 4 3 2 24 24 C 1.37813 * 119.87950 * 359.39631 * 23 4 3 25 25 C 1.38632 * 119.94031 * 180.02562 * 2 1 3 26 26 F 1.35109 * 119.88036 * 0.02562 * 25 2 1 27 27 H 1.09004 * 109.46845 * 269.97731 * 1 2 3 28 28 H 1.09000 * 109.46720 * 29.98028 * 1 2 3 29 29 H 1.09001 * 109.46706 * 149.97879 * 1 2 3 30 30 H 1.08002 * 120.05534 * 359.97438 * 3 2 1 31 31 H 0.97000 * 120.00236 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.46595 * 305.93553 * 8 7 5 33 33 H 1.09000 * 109.46978 * 65.93298 * 8 7 5 34 34 H 1.08993 * 110.72126 * 336.75670 * 11 9 8 35 35 H 1.08998 * 110.71518 * 100.03065 * 11 9 8 36 36 H 1.09005 * 111.00118 * 153.58062 * 12 11 9 37 37 H 1.08999 * 111.00288 * 277.42965 * 12 11 9 38 38 H 1.09004 * 110.36295 * 81.83005 * 13 12 11 39 39 H 1.08999 * 110.36993 * 204.04020 * 13 12 11 40 40 H 0.97003 * 119.99722 * 179.97438 * 18 17 15 41 41 H 1.08004 * 120.05537 * 179.67956 * 23 4 3 42 42 H 1.07995 * 119.93809 * 180.28651 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1951 1.1946 0.0000 4 6 3.5914 1.1931 0.0059 5 6 4.3340 2.4701 0.0126 6 8 3.7295 3.5247 0.0184 7 7 5.6818 2.4658 0.0121 8 6 6.4183 3.7323 0.0193 9 6 7.9149 3.4527 -0.1320 10 1 8.2575 2.8171 0.6845 11 6 8.7000 4.7814 -0.1281 12 6 9.8070 4.5340 -1.1867 13 6 9.0557 3.6634 -2.2247 14 7 8.1731 2.7971 -1.4224 15 6 7.6763 1.5825 -1.8140 16 1 7.3793 0.8560 -1.0721 17 6 7.5546 1.2851 -3.1644 18 7 7.4734 0.0316 -3.5575 19 14 7.5059 2.6639 -4.4238 20 1 8.8926 3.0624 -4.7753 21 1 6.8012 2.1952 -5.6439 22 1 6.7854 3.8302 -3.8531 23 6 4.2834 -0.0202 -0.0009 24 6 3.5857 -1.2086 -0.0009 25 6 2.1990 -1.2013 -0.0005 26 9 1.5198 -2.3693 -0.0016 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6551 2.1299 -0.0004 31 1 6.1642 1.6243 0.0077 32 1 6.0792 4.3543 -0.8091 33 1 6.2390 4.2515 0.9607 34 1 8.0579 5.6096 -0.4277 35 1 9.1385 4.9671 0.8523 36 1 10.1393 5.4723 -1.6310 37 1 10.6463 3.9894 -0.7543 38 1 8.4659 4.2924 -2.8915 39 1 9.7617 3.0620 -2.7974 40 1 7.3880 -0.1761 -4.5011 41 1 5.3635 -0.0268 -0.0016 42 1 4.1198 -2.1472 -0.0015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028110143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:42:58 Heat of formation + Delta-G solvation = -35.921551 kcal Electronic energy + Delta-G solvation = -25431.136376 eV Core-core repulsion = 21711.998905 eV Total energy + Delta-G solvation = -3719.137471 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.90727 -39.88324 -38.43076 -37.59658 -34.12948 -32.89451 -32.69914 -30.80614 -30.05503 -29.28927 -26.98012 -25.19055 -24.16776 -22.80201 -22.16271 -21.07991 -19.89040 -19.39720 -17.70822 -17.29317 -16.68659 -16.45542 -15.73362 -15.64060 -15.18948 -15.11381 -14.53086 -14.38925 -13.66196 -13.54053 -13.40609 -13.31278 -13.19379 -13.04056 -12.76977 -12.62769 -12.52922 -11.98836 -11.77653 -11.68658 -11.33998 -11.22693 -10.99589 -10.92455 -10.74945 -10.56206 -10.10575 -10.04059 -9.58854 -9.46238 -8.90135 -8.78946 -8.63535 -8.32809 -7.12993 -6.08093 -3.42084 0.85566 1.29669 3.05337 3.29189 3.44172 3.47866 3.67128 3.99816 4.23383 4.46000 4.67949 4.78532 4.83537 5.03259 5.14414 5.20259 5.24004 5.28214 5.35824 5.49861 5.50718 5.54391 5.71251 5.78831 5.86707 5.99448 6.01932 6.04970 6.07068 6.19533 6.21270 6.25086 6.30482 6.34661 6.42092 6.60073 6.72555 6.78541 6.87205 7.02728 7.60065 8.07605 8.16654 8.64208 8.73043 9.55759 10.08066 11.06835 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.004533 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.591680 B = 6175.187392 C = 7019.531482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.135 4.135 3 C -0.038 4.038 4 C -0.133 4.133 5 C 0.555 3.445 6 O -0.558 6.558 7 N -0.694 5.694 8 C 0.114 3.886 9 C 0.144 3.856 10 H 0.050 0.950 11 C -0.123 4.123 12 C -0.131 4.131 13 C 0.112 3.888 14 N -0.602 5.602 15 C -0.245 4.245 16 H 0.086 0.914 17 C 0.033 3.967 18 N -0.902 5.902 19 Si 0.884 3.116 20 H -0.285 1.285 21 H -0.303 1.303 22 H -0.275 1.275 23 C -0.049 4.049 24 C -0.153 4.153 25 C 0.113 3.887 26 F -0.138 7.138 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.143 0.857 31 H 0.409 0.591 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.024 0.976 39 H 0.058 0.942 40 H 0.265 0.735 41 H 0.143 0.857 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 1.797 8.952 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.136 4.136 3 C -0.057 4.057 4 C -0.136 4.136 5 C 0.342 3.658 6 O -0.439 6.439 7 N -0.346 5.346 8 C -0.012 4.012 9 C 0.037 3.963 10 H 0.068 0.932 11 C -0.162 4.162 12 C -0.169 4.169 13 C -0.013 4.013 14 N -0.328 5.328 15 C -0.372 4.372 16 H 0.103 0.897 17 C -0.168 4.168 18 N -0.544 5.544 19 Si 0.714 3.286 20 H -0.212 1.212 21 H -0.231 1.231 22 H -0.201 1.201 23 C -0.068 4.068 24 C -0.172 4.172 25 C 0.094 3.906 26 F -0.117 7.117 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.160 0.840 31 H 0.249 0.751 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.041 0.959 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.160 0.840 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.935 2.275 8.785 10.843 hybrid contribution 0.084 0.022 -1.086 1.090 sum -5.850 2.297 7.699 9.939 Atomic orbital electron populations 1.20697 0.89963 1.03361 1.02678 1.19819 0.97111 0.91606 1.05059 1.20978 0.92661 0.97551 0.94488 1.20092 0.94181 0.93657 1.05689 1.18092 0.82636 0.88278 0.76840 1.90706 1.68864 1.32505 1.51852 1.45982 1.05399 1.11020 1.72226 1.21965 0.93229 0.85624 1.00378 1.21339 0.91239 0.92997 0.90729 0.93247 1.22517 0.97452 0.97004 0.99194 1.22720 0.97600 0.99416 0.97194 1.21934 0.92608 0.92811 0.93909 1.44857 1.54055 1.19596 1.14254 1.18316 1.39290 0.87910 0.91681 0.89686 1.25067 0.98942 0.95823 0.96946 1.69794 1.52028 1.16547 1.16034 0.86928 0.77634 0.83002 0.81027 1.21193 1.23097 1.20101 1.21322 1.00861 0.90633 0.93949 1.21077 0.91907 1.00099 1.04074 1.17765 0.90033 0.80823 1.02001 1.91472 1.80198 1.46299 1.93690 0.90913 0.90839 0.91237 0.83965 0.75092 0.91734 0.92743 0.91342 0.91260 0.91703 0.91219 0.95884 0.92408 0.92562 0.83960 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.83 36.01 0.35 -0.80 16 2 C -0.14 -1.84 5.88 -104.61 -0.62 -2.45 16 3 C -0.04 -0.57 9.24 -39.20 -0.36 -0.93 16 4 C -0.13 -2.25 5.87 -104.96 -0.62 -2.87 16 5 C 0.55 10.69 7.77 -12.38 -0.10 10.59 16 6 O -0.56 -12.05 16.33 5.31 0.09 -11.96 16 7 N -0.69 -12.99 4.76 -61.29 -0.29 -13.28 16 8 C 0.11 2.06 5.18 -4.04 -0.02 2.04 16 9 C 0.14 2.54 3.34 -66.95 -0.22 2.32 16 10 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.12 -1.79 6.48 -24.90 -0.16 -1.95 16 12 C -0.13 -2.02 7.08 -24.58 -0.17 -2.19 16 13 C 0.11 2.29 4.73 -2.53 -0.01 2.28 16 14 N -0.60 -13.11 2.87 -162.57 -0.47 -13.58 16 15 C -0.24 -6.13 8.88 -15.06 -0.13 -6.27 16 16 H 0.09 2.15 6.55 -52.48 -0.34 1.81 16 17 C 0.03 0.88 5.45 -17.43 -0.09 0.79 16 18 N -0.90 -25.91 13.97 55.49 0.78 -25.14 16 19 Si 0.88 22.23 24.33 -169.99 -4.14 18.10 16 20 H -0.29 -6.91 6.68 56.52 0.38 -6.53 16 21 H -0.30 -7.86 7.11 56.52 0.40 -7.45 16 22 H -0.28 -7.04 6.75 56.52 0.38 -6.66 16 23 C -0.05 -0.77 9.54 -39.20 -0.37 -1.14 16 24 C -0.15 -2.20 10.01 -39.58 -0.40 -2.60 16 25 C 0.11 1.61 7.25 -39.27 -0.28 1.33 16 26 F -0.14 -1.91 16.46 2.25 0.04 -1.87 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.07 0.70 7.63 -51.93 -0.40 0.30 16 30 H 0.14 2.06 7.65 -52.49 -0.40 1.66 16 31 H 0.41 7.54 3.99 -40.82 -0.16 7.37 16 32 H 0.06 1.32 8.12 -51.93 -0.42 0.90 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.96 7.85 -51.93 -0.41 0.56 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.51 5.45 -51.93 -0.28 0.22 16 39 H 0.06 1.26 7.18 -51.93 -0.37 0.89 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.14 2.22 6.40 -52.48 -0.34 1.89 16 42 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -30.49 339.89 -7.77 -38.26 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.68 Total: 6.20 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -3.21 Total: -1.86 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.02 Total: -51.99 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.14 Total: 18.10 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.49 -7.77 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028110143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.340 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds