Wall clock time and date at job start Fri Apr 10 2020 21:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 110.78335 * 2 1 4 4 C 1.54330 * 110.71673 * 123.23632 * 2 1 3 5 5 N 1.47026 * 107.26840 * 96.16971 * 4 2 1 6 6 C 1.36932 * 125.64483 * 178.97605 * 5 4 2 7 7 H 1.08001 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00288 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99512 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00603 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46967 * 59.99522 * 10 8 6 12 12 H 1.48490 * 109.47539 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46744 * 300.00148 * 10 8 6 14 14 C 1.47420 * 108.70428 * 358.94103 * 5 4 2 15 15 C 1.54907 * 104.83524 * 24.12518 * 14 5 4 16 16 H 1.09000 * 111.00618 * 204.91301 * 15 14 5 17 17 N 1.46508 * 111.00214 * 81.10542 * 15 14 5 18 18 C 1.34769 * 119.99941 * 86.45493 * 17 15 14 19 19 O 1.21568 * 120.00216 * 0.02562 * 18 17 15 20 20 C 1.47729 * 119.99689 * 180.02562 * 18 17 15 21 21 C 1.39656 * 120.11962 * 359.72119 * 20 18 17 22 22 C 1.37836 * 119.87588 * 179.74592 * 21 20 18 23 23 C 1.38655 * 120.12164 * 0.51176 * 22 21 20 24 24 F 1.35103 * 119.87836 * 179.74764 * 23 22 21 25 25 C 1.38651 * 120.23730 * 359.76232 * 23 22 21 26 26 C 1.37841 * 120.12149 * 359.97438 * 25 23 22 27 27 H 1.08998 * 109.47047 * 298.21692 * 1 2 3 28 28 H 1.09000 * 109.46907 * 58.21733 * 1 2 3 29 29 H 1.09001 * 109.47302 * 178.21808 * 1 2 3 30 30 H 1.08994 * 109.47458 * 181.78306 * 3 2 1 31 31 H 1.09010 * 109.46817 * 301.78688 * 3 2 1 32 32 H 1.09000 * 109.47214 * 61.77667 * 3 2 1 33 33 H 1.08998 * 109.88224 * 336.75291 * 4 2 1 34 34 H 1.08998 * 109.88221 * 215.58683 * 4 2 1 35 35 H 0.97003 * 120.00403 * 180.02562 * 9 8 6 36 36 H 1.08997 * 110.36858 * 142.96748 * 14 5 4 37 37 H 1.08999 * 110.36307 * 265.28963 * 14 5 4 38 38 H 0.97001 * 119.99338 * 266.45591 * 17 15 14 39 39 H 1.07999 * 120.05813 * 359.97438 * 21 20 18 40 40 H 1.07997 * 119.93661 * 180.25616 * 22 21 20 41 41 H 1.08002 * 119.94096 * 179.97438 * 25 23 22 42 42 H 1.07999 * 120.05868 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0760 -0.7912 1.2074 5 7 2.3715 -2.1532 0.7391 6 6 2.8930 -3.1637 1.5020 7 1 3.1232 -2.9909 2.5429 8 6 3.1269 -4.4100 0.9371 9 7 2.8478 -4.6202 -0.3318 10 14 3.8390 -5.7883 1.9775 11 1 2.9252 -6.0746 3.1124 12 1 3.9925 -7.0083 1.1450 13 1 5.1661 -5.3774 2.5021 14 6 2.0126 -2.2510 -0.6874 15 6 2.0789 -0.7956 -1.2137 16 1 1.4396 -0.6664 -2.0871 17 7 3.4595 -0.4087 -1.5153 18 6 3.9879 -0.6845 -2.7240 19 8 3.3189 -1.2540 -3.5642 20 6 5.3801 -0.2949 -3.0278 21 6 6.1489 0.3646 -2.0663 22 6 7.4491 0.7212 -2.3533 23 6 7.9904 0.4357 -3.5975 24 9 9.2637 0.7920 -3.8753 25 6 7.2296 -0.2137 -4.5576 26 6 5.9301 -0.5797 -4.2794 27 1 -0.3633 0.4859 0.9055 28 1 -0.3633 0.5413 -0.8736 29 1 -0.3634 -1.0272 -0.0320 30 1 3.1621 1.4057 -0.0320 31 1 1.6957 1.9622 -0.8736 32 1 1.7475 1.9425 0.9055 33 1 1.3262 -0.8254 1.9978 34 1 2.9868 -0.3207 1.5777 35 1 3.0109 -5.4911 -0.7266 36 1 2.7292 -2.8788 -1.2167 37 1 1.0039 -2.6488 -0.7983 38 1 3.9931 0.0460 -0.8449 39 1 5.7267 0.5914 -1.0985 40 1 8.0458 1.2275 -1.6091 41 1 7.6560 -0.4333 -5.5253 42 1 5.3383 -1.0851 -5.0281 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972749943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:42:41 Heat of formation + Delta-G solvation = -27.769737 kcal Electronic energy + Delta-G solvation = -25614.435668 eV Core-core repulsion = 21895.651686 eV Total energy + Delta-G solvation = -3718.783982 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.08269 -40.12981 -38.75964 -37.40636 -33.89796 -33.17916 -31.23628 -30.82029 -30.64366 -28.07745 -26.82086 -25.62652 -24.08723 -23.21405 -22.77196 -20.69371 -19.82043 -18.92710 -17.96627 -17.23493 -16.71074 -16.50420 -15.76814 -15.53299 -15.08151 -14.73899 -14.32541 -14.06327 -13.84164 -13.80428 -13.69341 -13.25885 -13.19611 -12.84825 -12.55846 -12.36244 -12.09065 -11.93666 -11.76709 -11.32769 -11.19660 -11.14776 -11.01727 -10.77060 -10.42753 -10.23929 -9.97623 -9.82918 -9.69522 -9.53928 -9.29881 -8.86013 -8.68233 -8.36253 -6.81862 -5.62861 -3.06266 0.67267 1.09854 2.94568 3.39921 3.44339 3.46464 3.52263 3.87842 4.04038 4.48563 4.54652 4.69738 4.86867 4.96405 5.09241 5.19963 5.21258 5.26399 5.51631 5.59370 5.68807 5.76836 5.77298 5.84655 5.92550 5.99530 6.03946 6.08582 6.14352 6.21258 6.24112 6.39406 6.47116 6.58500 6.65891 6.67788 6.72739 6.96004 7.48025 7.61590 7.86307 7.98553 8.39437 8.63665 9.21944 9.83542 10.47417 11.39582 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.004877 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.014802 B = 5739.763548 C = 7055.334924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.227 4.227 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.917 5.917 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.146 3.854 15 C 0.124 3.876 16 H 0.087 0.913 17 N -0.695 5.695 18 C 0.557 3.443 19 O -0.537 6.537 20 C -0.132 4.132 21 C -0.057 4.057 22 C -0.160 4.160 23 C 0.114 3.886 24 F -0.139 7.139 25 C -0.162 4.162 26 C -0.033 4.033 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.024 0.976 34 H 0.021 0.979 35 H 0.253 0.747 36 H 0.114 0.886 37 H 0.021 0.979 38 H 0.395 0.605 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.881 14.013 -4.537 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.355 4.355 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.020 3.980 15 C 0.019 3.981 16 H 0.105 0.895 17 N -0.346 5.346 18 C 0.343 3.657 19 O -0.415 6.415 20 C -0.135 4.135 21 C -0.076 4.076 22 C -0.179 4.179 23 C 0.094 3.906 24 F -0.118 7.118 25 C -0.181 4.181 26 C -0.052 4.052 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.064 0.936 36 H 0.132 0.868 37 H 0.039 0.961 38 H 0.231 0.769 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.484 13.377 -5.146 15.018 hybrid contribution 0.904 -0.544 0.995 1.450 sum 5.389 12.833 -4.151 14.525 Atomic orbital electron populations 1.21685 0.93436 1.02527 1.00929 1.21846 0.96124 0.94515 0.96386 1.21726 1.00227 0.95509 1.01447 1.21408 0.96421 0.86844 0.93630 1.44448 1.74257 1.06634 1.07338 1.18969 1.34444 0.89275 0.92828 0.90644 1.24787 1.01653 0.97618 0.96317 1.69789 1.53483 1.22415 1.10751 0.86202 0.78871 0.81678 0.79007 1.21232 1.21591 1.21268 1.22317 1.00176 0.90400 0.85063 1.22543 0.80953 0.98345 0.96296 0.89540 1.45741 1.15077 1.59548 1.14209 1.17979 0.85922 0.79251 0.82543 1.90769 1.61655 1.41607 1.47452 1.20202 0.95320 1.02453 0.95526 1.21210 0.92927 0.94711 0.98717 1.21049 0.96587 1.04199 0.96091 1.17940 0.79387 0.98483 0.94747 1.91504 1.36394 1.89740 1.94120 1.21116 0.94911 1.01997 1.00077 1.21166 0.93585 0.94595 0.95855 0.92637 0.93063 0.91711 0.93105 0.92709 0.92593 0.95816 0.96158 0.93605 0.86811 0.96129 0.76927 0.84632 0.84230 0.84191 0.83528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.44 37.16 0.31 -1.56 16 2 C -0.09 -1.40 0.81 -152.67 -0.12 -1.52 16 3 C -0.13 -1.64 8.16 37.15 0.30 -1.33 16 4 C 0.14 2.79 6.41 -3.06 -0.02 2.77 16 5 N -0.60 -14.75 3.39 -170.07 -0.58 -15.33 16 6 C -0.23 -6.19 10.27 -15.06 -0.15 -6.34 16 7 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -27.02 10.09 55.49 0.56 -26.46 16 10 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.15 3.53 5.26 -2.53 -0.01 3.52 16 15 C 0.12 2.33 2.56 -65.78 -0.17 2.16 16 16 H 0.09 1.65 7.63 -51.93 -0.40 1.26 16 17 N -0.70 -11.89 4.63 -52.70 -0.24 -12.14 16 18 C 0.56 10.02 7.77 -12.39 -0.10 9.93 16 19 O -0.54 -11.49 16.09 5.31 0.09 -11.40 16 20 C -0.13 -1.93 5.87 -104.96 -0.62 -2.55 16 21 C -0.06 -0.69 9.54 -39.20 -0.37 -1.06 16 22 C -0.16 -1.76 10.01 -39.57 -0.40 -2.16 16 23 C 0.11 1.32 7.31 -39.28 -0.29 1.04 16 24 F -0.14 -1.63 17.26 2.25 0.04 -1.59 16 25 C -0.16 -1.84 10.01 -39.57 -0.40 -2.24 16 26 C -0.03 -0.44 9.59 -39.20 -0.38 -0.81 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.08 7.44 -51.93 -0.39 0.70 16 30 H 0.05 0.60 6.21 -51.93 -0.32 0.27 16 31 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.02 0.47 7.84 -51.93 -0.41 0.06 16 34 H 0.02 0.39 7.82 -51.93 -0.41 -0.02 16 35 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.11 3.23 5.87 -51.93 -0.30 2.92 16 37 H 0.02 0.54 7.71 -51.93 -0.40 0.14 16 38 H 0.39 5.89 4.85 -40.82 -0.20 5.70 16 39 H 0.14 1.41 6.40 -52.49 -0.34 1.08 16 40 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.15 1.92 7.65 -52.49 -0.40 1.52 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -31.83 344.08 -8.12 -39.95 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.64 Total: 5.18 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -2.50 Total: -0.49 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.26 Total: -53.93 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.83 -8.12 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972749943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.176 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds