Wall clock time and date at job start Fri Apr 10 2020 21:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 110.78020 * 2 1 4 4 C 1.54319 * 110.71788 * 236.76029 * 2 1 3 5 5 N 1.47028 * 107.27002 * 219.44349 * 4 2 1 6 6 C 1.36930 * 125.64841 * 178.97679 * 5 4 2 7 7 H 1.08000 * 120.00635 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99968 * 179.97438 * 6 5 4 9 9 N 1.31615 * 119.99770 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00018 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47162 * 60.00179 * 10 8 6 12 12 H 1.48504 * 109.47179 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47201 * 300.00267 * 10 8 6 14 14 C 1.47524 * 108.71302 * 358.94459 * 5 4 2 15 15 C 1.54911 * 104.78657 * 24.11688 * 14 5 4 16 16 H 1.08992 * 111.00617 * 204.90222 * 15 14 5 17 17 N 1.46508 * 111.00270 * 81.08840 * 15 14 5 18 18 C 1.34772 * 119.99742 * 89.58121 * 17 15 14 19 19 O 1.21572 * 120.00490 * 0.02562 * 18 17 15 20 20 C 1.47697 * 119.99882 * 180.02562 * 18 17 15 21 21 C 1.39657 * 120.16430 * 359.95342 * 20 18 17 22 22 C 1.37856 * 119.88077 * 180.02562 * 21 20 18 23 23 C 1.38465 * 120.21422 * 0.02785 * 22 21 20 24 24 C 1.38207 * 120.34022 * 0.02562 * 23 22 21 25 25 C 1.38319 * 120.11438 * 359.95305 * 24 23 22 26 26 F 1.35101 * 120.10811 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.47046 * 296.76516 * 1 2 3 28 28 H 1.09004 * 109.46747 * 56.76120 * 1 2 3 29 29 H 1.09000 * 109.47368 * 176.76109 * 1 2 3 30 30 H 1.09004 * 109.47045 * 183.23779 * 3 2 1 31 31 H 1.09005 * 109.46840 * 303.23881 * 3 2 1 32 32 H 1.08999 * 109.47134 * 63.23371 * 3 2 1 33 33 H 1.08996 * 109.88633 * 338.86015 * 4 2 1 34 34 H 1.08998 * 109.88280 * 99.87402 * 4 2 1 35 35 H 0.97000 * 120.00046 * 179.97438 * 9 8 6 36 36 H 1.09002 * 110.37077 * 265.30624 * 14 5 4 37 37 H 1.09000 * 110.41200 * 142.95297 * 14 5 4 38 38 H 0.97000 * 119.99624 * 269.59038 * 17 15 14 39 39 H 1.08006 * 120.06603 * 0.03138 * 21 20 18 40 40 H 1.07995 * 119.89425 * 180.30097 * 22 21 20 41 41 H 1.08000 * 119.82798 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.93882 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 3.2445 -1.5508 -0.7390 6 6 4.0042 -2.3970 -1.5017 7 1 3.7616 -2.5504 -2.5428 8 6 5.0871 -3.0570 -0.9370 9 7 5.3832 -2.8697 0.3317 10 14 6.1239 -4.2108 -1.9776 11 1 6.7152 -3.4573 -3.1125 12 1 7.2107 -4.7864 -1.1452 13 1 5.2698 -5.3064 -2.5024 14 6 3.4636 -1.2498 0.6885 15 6 2.0789 -0.7954 1.2138 16 1 2.1843 -0.1519 2.0872 17 7 1.2270 -1.9487 1.5145 18 6 1.2505 -2.5016 2.7434 19 8 1.9782 -2.0430 3.6026 20 6 0.3921 -3.6647 3.0464 21 6 -0.4459 -4.1937 2.0624 22 6 -1.2450 -5.2791 2.3518 23 6 -1.2199 -5.8459 3.6148 24 6 -0.3949 -5.3290 4.5957 25 6 0.4130 -4.2405 4.3204 26 9 1.2199 -3.7356 5.2792 27 1 -0.3633 0.4628 0.9176 28 1 -0.3633 0.5633 -0.8596 29 1 -0.3634 -1.0260 -0.0581 30 1 3.1611 1.4061 -0.0580 31 1 1.6751 1.9700 -0.8596 32 1 1.7691 1.9344 0.9175 33 1 1.3130 -1.4758 -1.5775 34 1 2.3715 -0.1026 -1.9988 35 1 6.1396 -3.3311 0.7264 36 1 4.1933 -0.4477 0.7996 37 1 3.7962 -2.1423 1.2185 38 1 0.6462 -2.3145 0.8291 39 1 -0.4678 -3.7534 1.0764 40 1 -1.8895 -5.6914 1.5896 41 1 -1.8489 -6.6958 3.8348 42 1 -0.3807 -5.7759 5.5787 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972758822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:42:48 Heat of formation + Delta-G solvation = -25.352019 kcal Electronic energy + Delta-G solvation = -25980.668938 eV Core-core repulsion = 22261.989796 eV Total energy + Delta-G solvation = -3718.679142 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.69910 -39.98769 -38.73229 -37.49345 -33.84638 -33.14440 -31.32261 -30.68068 -30.52814 -28.08285 -26.81622 -25.61004 -24.24470 -23.22151 -22.46960 -20.69089 -19.81819 -18.90649 -17.83087 -16.97957 -16.66719 -16.38033 -15.57893 -15.42545 -15.22943 -14.62939 -14.46447 -14.10121 -13.88390 -13.77144 -13.52205 -13.18705 -13.05804 -12.69408 -12.35044 -12.13456 -12.07666 -11.91017 -11.73428 -11.41713 -11.29521 -11.15882 -10.99026 -10.75801 -10.41542 -10.22191 -9.95470 -9.80877 -9.67646 -9.45735 -9.22715 -8.80314 -8.66880 -8.32900 -6.80311 -5.61248 -3.04747 0.72787 1.08295 3.03456 3.40613 3.44879 3.47394 3.51611 3.85411 4.20054 4.49677 4.57867 4.70879 4.86055 4.98431 5.13426 5.14937 5.23899 5.29441 5.53356 5.58012 5.64579 5.79597 5.87839 5.89321 5.93903 6.02597 6.04779 6.10732 6.17916 6.20233 6.25798 6.41286 6.49117 6.60816 6.69899 6.71034 6.74826 6.98753 7.50259 7.62952 7.88334 8.00676 8.40603 8.67318 9.23159 9.84937 10.49084 11.41213 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.011737 B = 0.005373 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.070105 B = 5210.272615 C = 6322.119800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.227 4.227 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.916 5.916 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.146 3.854 15 C 0.124 3.876 16 H 0.088 0.912 17 N -0.694 5.694 18 C 0.554 3.446 19 O -0.528 6.528 20 C -0.161 4.161 21 C -0.057 4.057 22 C -0.141 4.141 23 C -0.072 4.072 24 C -0.168 4.168 25 C 0.157 3.843 26 F -0.115 7.115 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.020 0.980 34 H 0.024 0.976 35 H 0.253 0.747 36 H 0.021 0.979 37 H 0.113 0.887 38 H 0.395 0.605 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.374 -1.252 3.913 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.355 4.355 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.564 5.564 10 Si 0.743 3.257 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.021 3.979 15 C 0.019 3.981 16 H 0.106 0.894 17 N -0.344 5.344 18 C 0.340 3.660 19 O -0.405 6.405 20 C -0.165 4.165 21 C -0.076 4.076 22 C -0.159 4.159 23 C -0.090 4.090 24 C -0.187 4.187 25 C 0.136 3.864 26 F -0.093 7.093 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.131 0.869 38 H 0.230 0.770 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.593 -1.011 4.575 16.281 hybrid contribution 0.521 -0.755 -0.845 1.248 sum -15.072 -1.767 3.729 15.626 Atomic orbital electron populations 1.21719 0.94643 1.01091 1.01366 1.21852 0.94823 0.95820 0.96394 1.21683 1.01957 0.94028 1.00894 1.21398 0.90296 0.92943 0.93621 1.44473 1.30658 1.50232 1.07317 1.18966 1.06512 1.17231 0.92817 0.90635 1.24799 0.98741 1.00574 0.96321 1.69793 1.29925 1.45903 1.10774 0.86200 0.79892 0.80647 0.78992 1.21235 1.21609 1.21275 1.22332 0.89146 1.01426 0.85040 1.22554 0.93284 0.85940 0.96342 0.89416 1.45665 1.44025 1.32854 1.11906 1.17862 0.82329 0.82810 0.83002 1.90822 1.40471 1.62496 1.46722 1.20259 1.02068 1.00092 0.94118 1.21270 0.93076 0.95065 0.98149 1.21135 1.00582 0.96875 0.97294 1.21152 0.96725 0.98634 0.92513 1.21141 0.98813 0.97080 1.01666 1.17742 0.90255 0.93109 0.85279 1.91599 1.70266 1.86045 1.61372 0.92760 0.92651 0.93093 0.91711 0.92684 0.93039 0.96191 0.95844 0.93598 0.96071 0.86926 0.76955 0.84729 0.84830 0.84776 0.84279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 8.07 37.16 0.30 -1.39 16 2 C -0.09 -1.45 0.80 -152.68 -0.12 -1.57 16 3 C -0.13 -1.93 8.41 37.16 0.31 -1.62 16 4 C 0.14 2.84 6.41 -3.06 -0.02 2.82 16 5 N -0.60 -14.95 3.40 -169.99 -0.58 -15.53 16 6 C -0.23 -6.25 10.27 -15.06 -0.15 -6.40 16 7 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.40 10.09 55.49 0.56 -26.84 16 10 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 14 C 0.15 3.62 5.28 -2.47 -0.01 3.61 16 15 C 0.12 2.43 2.61 -65.78 -0.17 2.25 16 16 H 0.09 1.76 7.53 -51.93 -0.39 1.37 16 17 N -0.69 -12.49 4.57 -52.71 -0.24 -12.73 16 18 C 0.55 10.77 7.77 -12.40 -0.10 10.67 16 19 O -0.53 -12.27 15.03 5.30 0.08 -12.19 16 20 C -0.16 -2.57 5.88 -104.91 -0.62 -3.19 16 21 C -0.06 -0.70 9.54 -39.19 -0.37 -1.07 16 22 C -0.14 -1.37 10.03 -39.64 -0.40 -1.76 16 23 C -0.07 -0.66 10.04 -39.51 -0.40 -1.06 16 24 C -0.17 -1.91 10.01 -39.56 -0.40 -2.30 16 25 C 0.16 2.42 7.29 -38.96 -0.28 2.14 16 26 F -0.11 -2.07 15.55 2.25 0.04 -2.04 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.62 6.42 -51.93 -0.33 0.29 16 30 H 0.06 1.11 7.57 -51.93 -0.39 0.72 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.02 0.38 7.76 -51.93 -0.40 -0.02 16 34 H 0.02 0.47 7.84 -51.93 -0.41 0.06 16 35 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.02 0.57 7.80 -51.93 -0.41 0.16 16 37 H 0.11 3.28 5.88 -51.93 -0.31 2.97 16 38 H 0.39 6.19 5.06 -40.82 -0.21 5.99 16 39 H 0.13 1.44 6.41 -52.48 -0.34 1.10 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 42 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -33.54 342.56 -8.22 -41.76 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.69 Total: 4.35 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.53 Total: 0.79 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.26 Total: -55.10 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.54 -8.22 -41.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972758822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.411 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds