Wall clock time and date at job start Fri Apr 10 2020 21:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 110.91702 * 2 1 4 4 C 1.54905 * 111.00505 * 236.09535 * 2 1 3 5 5 N 1.47425 * 104.83031 * 278.93994 * 4 2 1 6 6 C 1.36937 * 125.64957 * 155.90838 * 5 4 2 7 7 H 1.07997 * 119.99842 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00261 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99813 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00340 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47560 * 89.99710 * 10 8 6 12 12 H 1.48506 * 109.47486 * 210.00282 * 10 8 6 13 13 H 1.48506 * 109.46967 * 330.00014 * 10 8 6 14 14 C 1.47020 * 108.70477 * 335.86807 * 5 4 2 15 15 C 1.54327 * 107.27149 * 1.06443 * 14 5 4 16 16 H 1.08994 * 110.87537 * 140.62444 * 15 14 5 17 17 N 1.46506 * 110.71823 * 263.83026 * 15 14 5 18 18 C 1.34779 * 119.99461 * 268.51824 * 17 15 14 19 19 O 1.21549 * 120.00382 * 0.02562 * 18 17 15 20 20 C 1.47856 * 119.99528 * 180.02562 * 18 17 15 21 21 C 1.39597 * 120.13026 * 359.72149 * 20 18 17 22 22 C 1.37949 * 119.89951 * 179.74239 * 21 20 18 23 23 C 1.38341 * 120.17333 * 0.54151 * 22 21 20 24 24 C 1.38555 * 120.27105 * 359.71279 * 23 22 21 25 25 F 1.35101 * 119.95533 * 180.02562 * 24 23 22 26 26 C 1.38207 * 120.08803 * 0.02903 * 24 23 22 27 27 H 1.09005 * 109.46813 * 296.10356 * 1 2 3 28 28 H 1.09003 * 109.46511 * 56.10012 * 1 2 3 29 29 H 1.08994 * 109.47109 * 176.09968 * 1 2 3 30 30 H 1.09001 * 109.46901 * 183.89805 * 3 2 1 31 31 H 1.09003 * 109.46856 * 303.89598 * 3 2 1 32 32 H 1.09001 * 109.46962 * 63.89648 * 3 2 1 33 33 H 1.08998 * 110.36938 * 37.77398 * 4 2 1 34 34 H 1.09000 * 110.36942 * 160.10039 * 4 2 1 35 35 H 0.97005 * 120.00061 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.88901 * 241.64616 * 14 5 4 37 37 H 1.09005 * 109.88336 * 120.47752 * 14 5 4 38 38 H 0.96995 * 119.99814 * 88.51772 * 17 15 14 39 39 H 1.07994 * 120.04808 * 0.02562 * 21 20 18 40 40 H 1.07996 * 119.91348 * 180.23354 * 22 21 20 41 41 H 1.08004 * 119.86611 * 179.69638 * 23 22 21 42 42 H 1.08004 * 120.08611 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0763 1.4292 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 2.0138 -2.2159 -0.7732 6 6 1.9459 -3.3000 -1.6070 7 1 1.9413 -3.1584 -2.6776 8 6 1.8831 -4.5811 -1.0761 9 7 1.8892 -4.7538 0.2287 10 14 1.7912 -6.0600 -2.2134 11 1 3.1648 -6.5270 -2.5303 12 1 1.0388 -7.1523 -1.5454 13 1 1.0968 -5.6766 -3.4689 14 6 2.0284 -2.2646 0.6961 15 6 2.0861 -0.8079 1.2023 16 1 1.4540 -0.6766 2.0805 17 7 3.4667 -0.4155 1.4963 18 6 3.9654 -0.5840 2.7371 19 8 3.2699 -1.0618 3.6120 20 6 5.3585 -0.1875 3.0339 21 6 6.1615 0.3561 2.0297 22 6 7.4589 0.7293 2.3132 23 6 7.9697 0.5558 3.5871 24 6 7.1808 0.0121 4.5879 25 9 7.6859 -0.1540 5.8298 26 6 5.8777 -0.3607 4.3174 27 1 -0.3633 0.4522 0.9229 28 1 -0.3632 0.5732 -0.8530 29 1 -0.3633 -1.0252 -0.0699 30 1 3.1637 1.4025 -0.0699 31 1 1.6706 1.9732 -0.8530 32 1 1.7836 1.9300 0.9229 33 1 1.4673 -0.6462 -2.0836 34 1 3.1183 -0.5234 -1.4024 35 1 1.8449 -5.6490 0.5998 36 1 2.9062 -2.8116 1.0403 37 1 1.1217 -2.7479 1.0601 38 1 4.0217 -0.0346 0.7980 39 1 5.7660 0.4885 1.0335 40 1 8.0791 1.1534 1.5374 41 1 8.9877 0.8452 3.8023 42 1 5.2629 -0.7849 5.0974 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972773187.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:42:52 Heat of formation + Delta-G solvation = -28.901912 kcal Electronic energy + Delta-G solvation = -25448.487827 eV Core-core repulsion = 21729.654751 eV Total energy + Delta-G solvation = -3718.833077 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.04753 -40.23580 -38.80653 -37.53249 -33.96407 -33.15437 -31.42946 -30.75985 -30.60320 -28.06641 -26.85094 -25.65574 -24.44079 -23.12443 -22.73675 -20.70550 -19.98302 -19.03778 -18.02833 -16.76575 -16.56029 -16.37146 -16.05059 -15.77342 -15.52024 -14.83330 -14.39229 -14.12458 -13.98881 -13.91981 -13.73092 -13.33645 -13.24388 -12.59960 -12.41465 -12.17388 -12.02920 -11.99845 -11.69962 -11.48511 -11.38716 -11.09731 -11.00597 -10.78383 -10.42228 -10.29001 -10.04495 -9.89638 -9.69130 -9.64817 -9.30156 -8.97603 -8.64955 -8.48565 -6.84233 -5.70027 -3.05107 0.60361 0.97551 2.85687 3.33303 3.40026 3.44805 3.47393 3.73512 4.07982 4.49169 4.53627 4.58137 4.82292 4.91039 4.94119 5.11144 5.24515 5.27972 5.50282 5.52594 5.62128 5.75181 5.78255 5.85401 5.89807 5.99175 6.00591 6.05966 6.14371 6.17443 6.21775 6.36160 6.54787 6.58046 6.59927 6.64772 6.68888 6.92089 7.53784 7.61589 7.78284 7.87337 8.24649 8.49004 9.21073 9.81855 10.46880 11.40699 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.014631 B = 0.004098 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.255711 B = 6830.845564 C = 7762.715595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.144 3.856 5 N -0.603 5.603 6 C -0.231 4.231 7 H 0.078 0.922 8 C -0.006 4.006 9 N -0.919 5.919 10 Si 0.910 3.090 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.175 3.825 15 C 0.122 3.878 16 H 0.092 0.908 17 N -0.700 5.700 18 C 0.554 3.446 19 O -0.533 6.533 20 C -0.094 4.094 21 C -0.097 4.097 22 C -0.097 4.097 23 C -0.136 4.136 24 C 0.090 3.910 25 F -0.138 7.138 26 C -0.098 4.098 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.014 0.986 35 H 0.253 0.747 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.395 0.605 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.470 15.120 3.378 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.092 4.092 3 C -0.188 4.188 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.049 3.951 15 C 0.018 3.982 16 H 0.110 0.890 17 N -0.351 5.351 18 C 0.340 3.660 19 O -0.410 6.410 20 C -0.097 4.097 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.155 4.155 24 C 0.071 3.929 25 F -0.116 7.116 26 C -0.117 4.117 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.231 0.769 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.934 14.509 4.057 17.027 hybrid contribution 0.464 -0.800 -0.708 1.165 sum 8.398 13.709 3.350 16.422 Atomic orbital electron populations 1.21598 0.93181 1.02996 1.00562 1.22033 0.96468 0.94124 0.96551 1.21677 1.00112 0.95607 1.01442 1.21631 0.96492 0.85783 0.94370 1.44437 1.86954 0.99712 1.01793 1.19020 1.44056 0.83970 0.88899 0.90454 1.24806 1.02131 0.97384 0.95938 1.69959 1.56554 1.20875 1.09184 0.86147 0.77514 0.82721 0.79515 1.21683 1.21685 1.20711 1.21533 1.01739 0.88389 0.83412 1.22560 0.80680 0.97672 0.97304 0.89038 1.45911 1.15044 1.63464 1.10679 1.18039 0.86106 0.78882 0.82989 1.90785 1.59982 1.44089 1.46183 1.19932 0.94867 1.01107 0.93835 1.21434 0.94081 0.97145 0.98946 1.20955 0.95305 0.99237 0.96038 1.21316 1.00583 1.00603 0.92965 1.17554 0.92745 1.02146 0.80466 1.91515 1.87342 1.93540 1.39241 1.21260 0.93839 0.98896 0.97720 0.93298 0.92846 0.91149 0.93199 0.92575 0.92794 0.94019 0.96805 0.93648 0.93328 0.92696 0.76858 0.84855 0.84351 0.84436 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.57 37.16 0.32 -1.63 16 2 C -0.09 -1.44 0.83 -152.36 -0.13 -1.57 16 3 C -0.13 -1.60 8.22 37.16 0.31 -1.30 16 4 C 0.14 2.74 6.12 -2.53 -0.02 2.73 16 5 N -0.60 -14.72 3.38 -170.08 -0.57 -15.30 16 6 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 7 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 8 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 9 N -0.92 -27.24 10.31 55.49 0.57 -26.67 16 10 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.17 4.22 4.79 -3.06 -0.01 4.21 16 15 C 0.12 2.28 2.59 -66.09 -0.17 2.11 16 16 H 0.09 1.78 7.45 -51.93 -0.39 1.39 16 17 N -0.70 -11.37 4.40 -52.96 -0.23 -11.60 16 18 C 0.55 9.54 7.77 -12.32 -0.10 9.44 16 19 O -0.53 -11.16 15.99 5.32 0.09 -11.07 16 20 C -0.09 -1.30 5.87 -104.97 -0.62 -1.92 16 21 C -0.10 -1.04 9.54 -39.18 -0.37 -1.42 16 22 C -0.10 -0.86 10.03 -39.65 -0.40 -1.25 16 23 C -0.14 -1.28 10.02 -39.43 -0.39 -1.68 16 24 C 0.09 1.07 7.29 -39.48 -0.29 0.78 16 25 F -0.14 -1.69 17.26 2.25 0.04 -1.65 16 26 C -0.10 -1.32 9.57 -39.11 -0.37 -1.69 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 30 H 0.05 0.55 6.48 -51.93 -0.34 0.22 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 34 H 0.01 0.26 7.98 -51.93 -0.41 -0.15 16 35 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.05 1.36 7.41 -51.93 -0.38 0.97 16 37 H 0.06 1.51 7.38 -51.93 -0.38 1.12 16 38 H 0.40 5.43 5.15 -40.82 -0.21 5.22 16 39 H 0.13 1.19 6.40 -52.49 -0.34 0.86 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.15 2.09 7.65 -52.48 -0.40 1.69 16 LS Contribution 345.90 15.07 5.21 5.21 Total: -1.00 -32.24 345.90 -8.18 -40.42 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.76 Total: 3.52 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.50 Total: 0.09 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.24 Total: -53.57 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.24 -8.18 -40.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972773187.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.519 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds