Wall clock time and date at job start Fri Apr 10 2020 21:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 110.91510 * 2 1 4 4 C 1.55383 * 111.19191 * 235.94494 * 2 1 3 5 5 N 1.47417 * 104.87592 * 204.98223 * 4 2 1 6 6 C 1.36941 * 125.64730 * 204.16709 * 5 4 2 7 7 H 1.08003 * 120.00000 * 354.83451 * 6 5 4 8 8 C 1.38813 * 119.99819 * 174.83666 * 6 5 4 9 9 N 1.31613 * 120.00527 * 7.05771 * 8 6 5 10 10 Si 1.86800 * 119.99719 * 187.06358 * 8 6 5 11 11 H 1.48498 * 109.47551 * 94.98647 * 10 8 6 12 12 H 1.48504 * 109.46981 * 214.98533 * 10 8 6 13 13 H 1.48502 * 109.47345 * 334.98250 * 10 8 6 14 14 C 1.47021 * 108.70507 * 24.12832 * 5 4 2 15 15 C 1.54317 * 107.26844 * 358.94091 * 14 5 4 16 16 H 1.09007 * 110.72198 * 219.26536 * 15 14 5 17 17 N 1.46501 * 110.71953 * 96.17378 * 15 14 5 18 18 C 1.34775 * 119.99977 * 88.56679 * 17 15 14 19 19 O 1.21546 * 120.00360 * 0.27404 * 18 17 15 20 20 C 1.47860 * 119.99878 * 180.27987 * 18 17 15 21 21 C 1.39590 * 120.12940 * 359.72129 * 20 18 17 22 22 C 1.37949 * 119.90242 * 179.74658 * 21 20 18 23 23 C 1.38345 * 120.17219 * 0.50799 * 22 21 20 24 24 C 1.38550 * 120.26748 * 359.76985 * 23 22 21 25 25 F 1.35099 * 119.95472 * 179.97438 * 24 23 22 26 26 C 1.38212 * 120.09379 * 359.97184 * 24 23 22 27 27 H 1.09003 * 109.46871 * 296.09870 * 1 2 3 28 28 H 1.08999 * 109.47165 * 56.09193 * 1 2 3 29 29 H 1.08991 * 109.46828 * 176.09750 * 1 2 3 30 30 H 1.09001 * 109.47652 * 183.89860 * 3 2 1 31 31 H 1.08998 * 109.47548 * 303.90184 * 3 2 1 32 32 H 1.09008 * 109.46923 * 63.90383 * 3 2 1 33 33 H 1.09005 * 110.34547 * 86.12293 * 4 2 1 34 34 H 1.09002 * 110.43838 * 323.88354 * 4 2 1 35 35 H 0.97003 * 120.00784 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.87962 * 239.52714 * 14 5 4 37 37 H 1.09002 * 109.88567 * 118.36340 * 14 5 4 38 38 H 0.97001 * 120.00093 * 268.84375 * 17 15 14 39 39 H 1.08001 * 120.05387 * 359.97438 * 21 20 18 40 40 H 1.07997 * 119.91493 * 180.24918 * 22 21 20 41 41 H 1.08001 * 119.86562 * 179.73971 * 23 22 21 42 42 H 1.07994 * 120.08785 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0917 -0.8113 -1.2003 5 7 3.4326 -1.2460 -0.7689 6 6 4.4724 -1.5692 -1.5994 7 1 4.3213 -1.5965 -2.6684 8 6 5.7206 -1.8618 -1.0671 9 7 5.8726 -1.9651 0.2361 10 14 7.1847 -2.1087 -2.2006 11 1 7.9317 -0.8317 -2.3299 12 1 8.0792 -3.1501 -1.6343 13 1 6.7074 -2.5406 -3.5389 14 6 3.4691 -1.2742 0.7006 15 6 2.0862 -0.8079 1.2022 16 1 2.1892 -0.1706 2.0805 17 7 1.2268 -1.9574 1.4962 18 6 1.2468 -2.5177 2.7217 19 8 1.9741 -2.0663 3.5846 20 6 0.3841 -3.6817 3.0166 21 6 -0.4564 -4.1989 2.0294 22 6 -1.2555 -5.2883 2.3080 23 6 -1.2338 -5.8629 3.5662 24 6 -0.4065 -5.3518 4.5532 25 9 -0.3906 -5.9176 5.7799 26 6 0.4026 -4.2640 4.2845 27 1 -0.3633 0.4521 0.9229 28 1 -0.3633 0.5733 -0.8529 29 1 -0.3633 -1.0252 -0.0699 30 1 3.1637 1.4027 -0.0699 31 1 1.6705 1.9733 -0.8529 32 1 1.7836 1.9300 0.9230 33 1 2.1643 -0.1783 -2.0848 34 1 1.4600 -1.6758 -1.4043 35 1 6.7448 -2.1700 0.6081 36 1 4.2428 -0.5985 1.0652 37 1 3.6665 -2.2886 1.0472 38 1 0.6464 -2.3177 0.8075 39 1 -0.4784 -3.7491 1.0477 40 1 -1.9029 -5.6910 1.5431 41 1 -1.8646 -6.7130 3.7802 42 1 1.0477 -3.8660 5.0537 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972773188.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:42:55 Heat of formation + Delta-G solvation = -28.714879 kcal Electronic energy + Delta-G solvation = -25448.093581 eV Core-core repulsion = 21729.268615 eV Total energy + Delta-G solvation = -3718.824966 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.04518 -40.23083 -38.79335 -37.51767 -33.96722 -33.14185 -31.42676 -30.76847 -30.60507 -28.06132 -26.85144 -25.65329 -24.44050 -23.12588 -22.73537 -20.71732 -19.95580 -19.04555 -18.02452 -16.75773 -16.55650 -16.37006 -16.04982 -15.77062 -15.51394 -14.83961 -14.38269 -14.12597 -13.98838 -13.91805 -13.73395 -13.33746 -13.23805 -12.59449 -12.41802 -12.17378 -12.03872 -12.00086 -11.69656 -11.48247 -11.38340 -11.09733 -11.02105 -10.79360 -10.42403 -10.27815 -10.02696 -9.89862 -9.70653 -9.63613 -9.29827 -8.97425 -8.62334 -8.48615 -6.83818 -5.71094 -3.05030 0.60680 0.97719 2.86131 3.33448 3.40303 3.45213 3.47914 3.74139 4.08194 4.49360 4.53680 4.58341 4.82042 4.90707 4.93664 5.11343 5.24228 5.26937 5.49782 5.53072 5.61589 5.75056 5.77337 5.85670 5.89120 5.98969 6.00733 6.06157 6.14273 6.17064 6.21651 6.36061 6.54805 6.57689 6.60093 6.64791 6.69000 6.92089 7.55533 7.60487 7.78718 7.87583 8.24701 8.49601 9.20814 9.81898 10.47375 11.39988 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.004071 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.355553 B = 6875.601465 C = 7795.087838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.126 4.126 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.233 4.233 7 H 0.078 0.922 8 C -0.004 4.004 9 N -0.916 5.916 10 Si 0.908 3.092 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.174 3.826 15 C 0.123 3.877 16 H 0.090 0.910 17 N -0.701 5.701 18 C 0.554 3.446 19 O -0.532 6.532 20 C -0.094 4.094 21 C -0.098 4.098 22 C -0.097 4.097 23 C -0.136 4.136 24 C 0.090 3.910 25 F -0.138 7.138 26 C -0.098 4.098 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.014 0.986 35 H 0.253 0.747 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.395 0.605 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.292 -2.579 3.394 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.361 4.361 7 H 0.096 0.904 8 C -0.201 4.201 9 N -0.563 5.563 10 Si 0.739 3.261 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.049 3.951 15 C 0.019 3.981 16 H 0.108 0.892 17 N -0.352 5.352 18 C 0.340 3.660 19 O -0.409 6.409 20 C -0.097 4.097 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.155 4.155 24 C 0.071 3.929 25 F -0.116 7.116 26 C -0.117 4.117 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.231 0.769 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.510 -2.322 4.066 17.161 hybrid contribution 0.613 -0.598 -0.701 1.107 sum -15.897 -2.920 3.365 16.509 Atomic orbital electron populations 1.21673 0.94709 1.00981 1.01488 1.22103 0.94410 0.96112 0.96523 1.21595 1.02572 0.93609 1.00562 1.21710 0.87776 0.94423 0.94333 1.44431 1.07849 1.78830 1.01776 1.19020 0.87398 1.40528 0.89131 0.90439 1.24822 0.97582 1.01800 0.95911 1.69969 1.22719 1.54199 1.09406 0.86156 0.82944 0.77412 0.79585 1.21602 1.21818 1.20684 1.21541 0.89621 1.00496 0.83468 1.22545 0.92316 0.86027 0.97256 0.89208 1.45928 1.43956 1.33072 1.12234 1.18036 0.82297 0.82849 0.82861 1.90788 1.40757 1.62958 1.46407 1.19933 0.98320 0.97379 0.94074 1.21428 0.95059 0.96221 0.98933 1.20954 0.98961 0.95517 0.96100 1.21314 0.99616 1.01377 0.93180 1.17555 0.99458 0.94830 0.81049 1.91515 1.95578 1.83967 1.40576 1.21262 0.98343 0.94404 0.97709 0.92753 0.92533 0.93217 0.91136 0.92826 0.93300 0.94001 0.96834 0.93633 0.92565 0.93511 0.76885 0.84879 0.84357 0.84437 0.83308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.23 37.16 0.31 -1.29 16 2 C -0.09 -1.44 0.84 -152.10 -0.13 -1.57 16 3 C -0.13 -1.95 8.58 37.16 0.32 -1.63 16 4 C 0.14 2.75 6.16 -2.28 -0.01 2.74 16 5 N -0.60 -14.76 3.38 -169.78 -0.57 -15.33 16 6 C -0.23 -6.35 10.27 -15.06 -0.15 -6.51 16 7 H 0.08 2.04 7.84 -52.48 -0.41 1.63 16 8 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 9 N -0.92 -27.22 10.36 55.49 0.57 -26.64 16 10 Si 0.91 22.07 29.56 -169.99 -5.02 17.04 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 14 C 0.17 4.22 4.81 -3.07 -0.01 4.21 16 15 C 0.12 2.30 2.53 -66.10 -0.17 2.13 16 16 H 0.09 1.74 7.53 -51.92 -0.39 1.35 16 17 N -0.70 -11.37 4.46 -52.97 -0.24 -11.61 16 18 C 0.55 9.57 7.77 -12.32 -0.10 9.47 16 19 O -0.53 -11.20 16.03 5.33 0.09 -11.11 16 20 C -0.09 -1.30 5.87 -104.97 -0.62 -1.92 16 21 C -0.10 -1.04 9.54 -39.18 -0.37 -1.42 16 22 C -0.10 -0.85 10.03 -39.65 -0.40 -1.25 16 23 C -0.14 -1.28 10.02 -39.43 -0.40 -1.68 16 24 C 0.09 1.07 7.29 -39.48 -0.29 0.78 16 25 F -0.14 -1.70 17.26 2.25 0.04 -1.66 16 26 C -0.10 -1.32 9.57 -39.11 -0.37 -1.70 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.54 6.44 -51.93 -0.33 0.21 16 30 H 0.07 1.31 7.91 -51.93 -0.41 0.89 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 34 H 0.01 0.26 8.00 -51.93 -0.42 -0.16 16 35 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.06 1.55 7.30 -51.93 -0.38 1.17 16 37 H 0.05 1.31 7.51 -51.93 -0.39 0.92 16 38 H 0.39 5.38 5.05 -40.82 -0.21 5.18 16 39 H 0.13 1.18 6.40 -52.49 -0.34 0.84 16 40 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.15 2.11 7.65 -52.49 -0.40 1.71 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -32.36 346.07 -8.18 -40.53 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.77 Total: 3.39 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.49 Total: 0.16 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.24 Total: -53.58 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.36 -8.18 -40.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972773188.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.820 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds