Wall clock time and date at job start Fri Apr 10 2020 21:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35502 * 117.00104 * 2 1 4 4 C 1.39644 * 120.49117 * 179.97438 * 3 2 1 5 5 C 1.39150 * 118.20995 * 180.02562 * 4 3 2 6 6 C 1.48443 * 120.51869 * 179.97438 * 5 4 3 7 7 O 1.21472 * 120.00403 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99501 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99479 * 180.27684 * 8 6 5 10 10 H 1.08995 * 109.50178 * 324.65988 * 9 8 6 11 11 C 1.53042 * 109.49447 * 204.56252 * 9 8 6 12 12 C 1.53045 * 109.53560 * 178.68497 * 11 9 8 13 13 C 1.53195 * 109.31291 * 61.36622 * 12 11 9 14 14 N 1.46933 * 108.77463 * 305.36352 * 13 12 11 15 15 C 1.36940 * 120.63035 * 233.63393 * 14 13 12 16 16 H 1.07993 * 120.00054 * 152.59537 * 15 14 13 17 17 C 1.38816 * 119.99516 * 332.60041 * 15 14 13 18 18 N 1.31619 * 119.99389 * 159.36389 * 17 15 14 19 19 Si 1.86790 * 120.00296 * 339.36108 * 17 15 14 20 20 H 1.48502 * 109.47291 * 92.90283 * 19 17 15 21 21 H 1.48503 * 109.47233 * 212.90219 * 19 17 15 22 22 H 1.48501 * 109.47206 * 332.90583 * 19 17 15 23 23 C 1.46925 * 118.73904 * 53.60858 * 14 13 12 24 24 N 1.33284 * 118.95792 * 0.27186 * 5 4 3 25 25 C 1.31532 * 120.88969 * 359.43923 * 24 5 4 26 26 N 1.31889 * 121.98367 * 0.58163 * 25 24 5 27 27 H 1.09003 * 109.46518 * 60.00535 * 1 2 3 28 28 H 1.08994 * 109.47139 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47509 * 300.00674 * 1 2 3 30 30 H 1.08001 * 120.90086 * 359.97438 * 4 3 2 31 31 H 0.96992 * 119.99915 * 0.02562 * 8 6 5 32 32 H 1.09003 * 109.46245 * 298.70240 * 11 9 8 33 33 H 1.08991 * 109.46160 * 58.66455 * 11 9 8 34 34 H 1.09004 * 109.49696 * 301.41046 * 12 11 9 35 35 H 1.08999 * 109.49432 * 181.31481 * 12 11 9 36 36 H 1.09004 * 109.58260 * 185.57923 * 13 12 11 37 37 H 1.08997 * 109.70566 * 65.21886 * 13 12 11 38 38 H 0.97000 * 120.00055 * 179.97438 * 18 17 15 39 39 H 1.08993 * 109.58533 * 186.60455 * 23 14 13 40 40 H 1.09001 * 109.58183 * 66.17918 * 23 14 13 41 41 H 1.08001 * 119.00370 * 180.26421 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4381 1.2923 0.0005 5 6 4.0200 2.5563 0.0011 6 6 5.4968 2.7063 0.0022 7 8 6.2074 1.7211 0.0022 8 7 6.0492 3.9357 0.0022 9 6 7.5067 4.0838 -0.0028 10 1 7.9555 3.2858 0.5886 11 6 7.8844 5.4398 0.5977 12 6 9.4081 5.5818 0.6231 13 6 9.9466 5.5207 -0.8098 14 7 9.4661 4.2850 -1.4432 15 6 10.3461 3.4102 -2.0225 16 1 10.1018 2.3601 -2.0841 17 6 11.5521 3.8733 -2.5305 18 7 12.5542 3.0391 -2.7101 19 14 11.7527 5.6803 -2.9591 20 1 12.3206 6.4053 -1.7941 21 1 12.6687 5.8149 -4.1203 22 1 10.4285 6.2573 -3.3037 23 6 8.0237 4.0056 -1.4428 24 7 3.2305 3.6302 0.0066 25 6 1.9211 3.5057 0.0004 26 7 1.3315 2.3259 0.0000 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 4.0481 0.4011 0.0014 31 1 5.4818 4.7224 0.0018 32 1 7.4555 6.2377 -0.0086 33 1 7.4964 5.5077 1.6140 34 1 9.8394 4.7700 1.2089 35 1 9.6769 6.5379 1.0723 36 1 11.0364 5.5217 -0.7909 37 1 9.5900 6.3827 -1.3735 38 1 13.3968 3.3626 -3.0654 39 1 7.8448 3.0071 -1.8415 40 1 7.5083 4.7443 -2.0567 41 1 1.3104 4.3965 0.0008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007351069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:42:29 Heat of formation + Delta-G solvation = 8.386993 kcal Electronic energy + Delta-G solvation = -24795.598305 eV Core-core repulsion = 21098.302158 eV Total energy + Delta-G solvation = -3697.296147 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.66314 -39.78720 -38.75010 -37.62276 -34.58599 -33.70504 -32.45782 -32.14701 -30.83754 -29.39790 -28.02503 -25.38297 -25.22195 -24.60005 -22.66625 -21.98307 -20.85565 -19.84672 -18.89618 -18.54238 -16.86054 -16.66000 -16.47465 -15.97604 -15.74983 -15.38822 -15.29138 -15.07687 -14.64469 -14.37810 -13.93677 -13.89059 -13.68959 -13.21455 -12.87039 -12.49378 -12.38615 -12.11246 -12.06866 -11.53163 -11.22525 -11.19511 -10.94431 -10.76589 -10.68877 -10.43551 -10.16310 -9.98381 -9.76475 -9.69690 -9.54723 -9.45480 -9.05682 -8.52978 -6.96568 -5.91390 -3.28152 0.21365 0.64720 2.34762 2.67110 3.03821 3.32953 3.49782 3.52672 3.55969 3.62008 3.70033 4.42404 4.55194 4.62894 4.78313 4.85029 4.92272 5.03136 5.13336 5.18005 5.24661 5.27765 5.43061 5.52221 5.71247 5.80028 5.93346 6.03140 6.18893 6.30510 6.31868 6.41663 6.46290 6.60106 6.65133 6.65972 6.75115 6.92502 7.45719 7.65777 7.98163 8.17543 8.37209 8.96829 9.74451 10.09935 11.24531 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.027896 B = 0.002979 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.476417 B = 9395.808788 C = 9906.163396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.297 6.297 3 C 0.364 3.636 4 C -0.184 4.184 5 C 0.164 3.836 6 C 0.565 3.435 7 O -0.513 6.513 8 N -0.696 5.696 9 C 0.122 3.878 10 H 0.094 0.906 11 C -0.116 4.116 12 C -0.131 4.131 13 C 0.121 3.879 14 N -0.601 5.601 15 C -0.259 4.259 16 H 0.087 0.913 17 C 0.023 3.977 18 N -0.907 5.907 19 Si 0.883 3.117 20 H -0.288 1.288 21 H -0.304 1.304 22 H -0.271 1.271 23 C 0.144 3.856 24 N -0.519 5.519 25 C 0.334 3.666 26 N -0.568 5.568 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.167 0.833 31 H 0.407 0.593 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.027 0.973 38 H 0.262 0.738 39 H 0.068 0.932 40 H 0.024 0.976 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.475 1.916 8.110 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.200 6.200 3 C 0.176 3.824 4 C -0.208 4.208 5 C 0.020 3.980 6 C 0.347 3.653 7 O -0.386 6.386 8 N -0.347 5.347 9 C 0.017 3.983 10 H 0.112 0.888 11 C -0.154 4.154 12 C -0.171 4.171 13 C -0.005 4.005 14 N -0.325 5.325 15 C -0.387 4.387 16 H 0.105 0.895 17 C -0.176 4.176 18 N -0.550 5.550 19 Si 0.714 3.286 20 H -0.216 1.216 21 H -0.232 1.232 22 H -0.196 1.196 23 C 0.017 3.983 24 N -0.241 5.241 25 C 0.046 3.954 26 N -0.299 5.299 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.185 0.815 31 H 0.243 0.757 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -24.166 1.618 8.035 25.518 hybrid contribution 0.006 0.783 -0.317 0.845 sum -24.160 2.401 7.718 25.476 Atomic orbital electron populations 1.23011 0.76260 1.03677 1.02874 1.86279 1.23660 1.23576 1.86486 1.20039 0.89246 0.85168 0.87989 1.21967 0.92694 1.00848 1.05313 1.21574 0.95253 0.88551 0.92625 1.17662 0.84989 0.84456 0.78157 1.90869 1.61069 1.37934 1.48773 1.45940 1.08700 1.07522 1.72488 1.21848 0.77195 0.98716 1.00518 0.88822 1.21677 0.97588 0.96051 1.00070 1.21998 0.94076 1.01318 0.99719 1.21417 0.99113 0.88984 0.90937 1.44293 1.01183 1.22448 1.64557 1.18953 0.97222 0.90219 1.32313 0.89525 1.25268 0.96125 0.97244 0.98923 1.69844 1.02478 1.34837 1.47871 0.86947 0.77423 0.87002 0.77245 1.21596 1.23193 1.19612 1.21219 0.84971 1.00048 0.92108 1.68374 1.06605 1.33020 1.16062 1.24689 0.88041 0.93829 0.88848 1.68040 1.42045 0.99340 1.20458 0.91786 0.87979 0.91825 0.81495 0.75703 0.91881 0.92257 0.91323 0.92120 0.90721 0.95563 0.92774 0.91349 0.95772 0.77738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.41 101.05 1.05 1.28 16 2 O -0.30 -2.91 10.49 -18.20 -0.19 -3.10 16 3 C 0.36 3.96 7.54 -16.68 -0.13 3.83 16 4 C -0.18 -2.21 9.68 -38.72 -0.37 -2.59 16 5 C 0.16 2.09 6.79 -82.69 -0.56 1.53 16 6 C 0.57 8.65 7.79 -12.05 -0.09 8.55 16 7 O -0.51 -9.68 16.08 5.39 0.09 -9.59 16 8 N -0.70 -9.82 5.08 -54.44 -0.28 -10.09 16 9 C 0.12 2.06 2.60 -67.81 -0.18 1.88 16 10 H 0.09 1.81 7.59 -51.93 -0.39 1.41 16 11 C -0.12 -1.69 5.35 -26.69 -0.14 -1.83 16 12 C -0.13 -2.22 6.08 -26.61 -0.16 -2.38 16 13 C 0.12 2.59 4.21 -3.71 -0.02 2.58 16 14 N -0.60 -14.48 2.77 -172.31 -0.48 -14.96 16 15 C -0.26 -7.41 10.04 -15.06 -0.15 -7.56 16 16 H 0.09 2.69 8.05 -52.49 -0.42 2.27 16 17 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 18 N -0.91 -28.23 13.97 55.49 0.78 -27.46 16 19 Si 0.88 22.46 24.34 -169.99 -4.14 18.32 16 20 H -0.29 -7.00 6.62 56.52 0.37 -6.63 16 21 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 22 H -0.27 -6.75 6.64 56.52 0.38 -6.38 16 23 C 0.14 2.95 6.09 -3.71 -0.02 2.93 16 24 N -0.52 -5.62 9.70 -11.20 -0.11 -5.73 16 25 C 0.33 2.93 12.27 -92.30 -1.13 1.80 16 26 N -0.57 -5.58 9.36 -14.65 -0.14 -5.72 16 27 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.17 2.00 7.73 -52.49 -0.41 1.59 16 31 H 0.41 4.77 7.99 -40.82 -0.33 4.44 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.76 4.50 -51.93 -0.23 1.53 16 37 H 0.03 0.55 7.07 -51.93 -0.37 0.19 16 38 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 39 H 0.07 1.52 7.93 -51.93 -0.41 1.11 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.21 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -33.78 338.53 -6.91 -40.70 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.55 Total: 1.92 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -2.00 Total: 10.61 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -0.22 Total: -63.96 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.10 Total: -12.69 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.14 Total: 18.32 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.78 -6.91 -40.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007351069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.087 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds