Wall clock time and date at job start Fri Apr 10 2020 21:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36931 * 119.99923 * 2 1 4 4 H 1.08002 * 119.99753 * 203.68580 * 3 2 1 5 5 C 1.38805 * 120.00401 * 23.68706 * 3 2 1 6 6 N 1.31622 * 120.00184 * 11.49531 * 5 3 2 7 7 Si 1.86808 * 120.00382 * 191.49503 * 5 3 2 8 8 H 1.48499 * 109.46802 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46826 * 119.99809 * 7 5 3 10 10 H 1.48500 * 109.47018 * 240.00124 * 7 5 3 11 11 C 1.46496 * 119.99737 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.49910 * 180.02562 * 11 2 1 13 13 C 1.53040 * 109.50179 * 59.99764 * 11 2 1 14 14 C 1.53039 * 109.53938 * 178.68418 * 13 11 2 15 15 C 1.53187 * 109.31506 * 61.36822 * 14 13 11 16 16 N 1.46934 * 108.77058 * 305.36229 * 15 14 13 17 17 C 1.34777 * 120.62609 * 233.58570 * 16 15 14 18 18 O 1.21560 * 119.99438 * 184.25538 * 17 16 15 19 19 C 1.47844 * 120.00506 * 4.25309 * 17 16 15 20 20 C 1.39596 * 120.13329 * 314.21135 * 19 17 16 21 21 C 1.37946 * 119.90704 * 180.23031 * 20 19 17 22 22 C 1.38339 * 120.16934 * 359.49216 * 21 20 19 23 23 C 1.38555 * 120.27102 * 0.50552 * 22 21 20 24 24 F 1.35099 * 119.95464 * 179.76811 * 23 22 21 25 25 C 1.38214 * 120.08948 * 359.75194 * 23 22 21 26 26 C 1.46919 * 118.73679 * 53.86472 * 16 15 14 27 27 H 1.09003 * 109.47297 * 275.18494 * 1 2 3 28 28 H 1.09000 * 109.47473 * 35.17645 * 1 2 3 29 29 H 1.09000 * 109.47634 * 155.17685 * 1 2 3 30 30 H 0.96991 * 120.00702 * 179.97438 * 6 5 3 31 31 H 1.09004 * 109.45671 * 58.66080 * 13 11 2 32 32 H 1.09008 * 109.45947 * 298.70596 * 13 11 2 33 33 H 1.09001 * 109.49622 * 301.40895 * 14 13 11 34 34 H 1.09001 * 109.52098 * 181.33654 * 14 13 11 35 35 H 1.09001 * 109.58744 * 185.58031 * 15 14 13 36 36 H 1.08997 * 109.58991 * 65.15120 * 15 14 13 37 37 H 1.08006 * 120.04591 * 359.95222 * 20 19 17 38 38 H 1.07991 * 119.91159 * 179.74455 * 21 20 19 39 39 H 1.08006 * 119.86611 * 180.25759 * 22 21 20 40 40 H 1.08001 * 120.08517 * 179.97438 * 25 23 22 41 41 H 1.08993 * 109.59265 * 65.92620 * 26 16 15 42 42 H 1.09005 * 109.58617 * 186.35232 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1614 1.2252 -0.3757 5 6 1.5434 2.3374 0.4829 6 7 0.4083 2.2557 1.1443 7 14 2.3383 4.0030 0.1942 8 1 3.5988 3.8240 -0.5702 9 1 1.4100 4.8672 -0.5782 10 1 2.6377 4.6418 1.5009 11 6 2.1974 -1.2687 -0.0006 12 1 3.2692 -1.0701 0.0000 13 6 1.8281 -2.0713 -1.2502 14 6 2.6174 -3.3823 -1.2684 15 6 2.2494 -4.2124 -0.0346 16 7 2.4652 -3.3946 1.1670 17 6 3.2357 -3.8470 2.1761 18 8 3.3442 -3.1958 3.1968 19 6 3.9488 -5.1351 2.0417 20 6 3.2832 -6.2558 1.5419 21 6 3.9517 -7.4565 1.4229 22 6 5.2828 -7.5503 1.7878 23 6 5.9505 -6.4426 2.2847 24 9 7.2491 -6.5425 2.6434 25 6 5.2898 -5.2354 2.4134 26 6 1.8202 -2.0773 1.2501 27 1 -0.3634 0.0929 1.0235 28 1 -0.3634 0.8400 -0.5920 29 1 -0.3634 -0.9327 -0.4314 30 1 -0.0152 3.0603 1.4821 31 1 2.0697 -1.4896 -2.1399 32 1 0.7603 -2.2904 -1.2387 33 1 3.6853 -3.1642 -1.2550 34 1 2.3719 -3.9428 -2.1704 35 1 2.8800 -5.1004 0.0097 36 1 1.2019 -4.5080 -0.0921 37 1 2.2449 -6.1839 1.2529 38 1 3.4357 -8.3245 1.0402 39 1 5.8026 -8.4918 1.6887 40 1 5.8103 -4.3721 2.8011 41 1 0.7384 -2.2022 1.2952 42 1 2.1674 -1.5560 2.1422 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027281306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:43:01 Heat of formation + Delta-G solvation = -19.646138 kcal Electronic energy + Delta-G solvation = -25325.861503 eV Core-core repulsion = 21607.429787 eV Total energy + Delta-G solvation = -3718.431716 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.14261 -40.54681 -38.57110 -37.32931 -35.14796 -32.55465 -31.58483 -31.29329 -30.82075 -28.64894 -26.02430 -25.73982 -23.95000 -23.20124 -22.87070 -21.65618 -20.11301 -18.86684 -17.85952 -16.86849 -16.79801 -16.59675 -16.07021 -15.81269 -15.52216 -15.17137 -14.65647 -14.24673 -14.15657 -13.91734 -13.68143 -13.50005 -13.20780 -12.80166 -12.63989 -12.52628 -12.30964 -12.15627 -11.90868 -11.64731 -11.12414 -11.02835 -10.82589 -10.63249 -10.43239 -10.36818 -10.19303 -9.91757 -9.78232 -9.71073 -9.38263 -8.96651 -8.60669 -8.37191 -6.75850 -5.72914 -3.20840 0.57768 0.84600 2.67515 3.01485 3.38399 3.39785 3.45696 3.47713 3.95235 4.30476 4.47186 4.48923 4.67517 4.70850 4.93312 4.98564 5.11572 5.23971 5.37191 5.42839 5.50108 5.55350 5.65229 5.69963 5.75780 5.84692 5.89819 5.94890 5.98563 6.09905 6.21043 6.34947 6.46172 6.49281 6.63086 6.74900 6.89832 6.95417 7.36222 7.56298 7.72282 7.81010 8.25396 8.39775 9.22686 9.84759 10.33516 11.31384 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.003432 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.329966 B = 8156.057281 C = 8687.609002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.591 5.591 3 C -0.257 4.257 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.905 5.905 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.169 3.831 12 H 0.065 0.935 13 C -0.134 4.134 14 C -0.131 4.131 15 C 0.092 3.908 16 N -0.596 5.596 17 C 0.551 3.449 18 O -0.530 6.530 19 C -0.087 4.087 20 C -0.105 4.105 21 C -0.096 4.096 22 C -0.139 4.139 23 C 0.095 3.905 24 F -0.137 7.137 25 C -0.105 4.105 26 C 0.098 3.902 27 H 0.031 0.969 28 H 0.041 0.959 29 H 0.000 1.000 30 H 0.252 0.748 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.064 0.936 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.094 -21.521 -3.400 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.313 5.313 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.059 3.941 12 H 0.083 0.917 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.031 4.031 16 N -0.329 5.329 17 C 0.338 3.662 18 O -0.407 6.407 19 C -0.091 4.091 20 C -0.124 4.124 21 C -0.114 4.114 22 C -0.158 4.158 23 C 0.076 3.924 24 F -0.115 7.115 25 C -0.125 4.125 26 C -0.025 4.025 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.162 0.838 41 H 0.082 0.918 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.062 -20.964 -2.777 21.745 hybrid contribution 0.516 0.932 -0.026 1.066 sum 5.578 -20.032 -2.804 20.982 Atomic orbital electron populations 1.20805 0.82584 0.95461 0.99532 1.43935 1.01857 1.00006 1.85473 1.19259 0.98829 0.85417 1.35142 0.91360 1.25065 0.97785 0.98647 0.97917 1.70061 1.18847 1.27278 1.38808 0.86173 0.78638 0.84201 0.77467 1.20304 1.21622 1.21644 1.20725 0.96512 0.86191 0.90630 0.91679 1.22101 0.99653 0.94987 1.00598 1.21906 1.01106 0.97254 0.96714 1.22211 1.01514 0.94469 0.84897 1.48225 1.48154 1.19376 1.17110 1.18232 0.79347 0.84905 0.83693 1.90830 1.63408 1.57982 1.28477 1.19856 0.94048 0.94795 1.00355 1.21499 1.00904 0.91980 0.97980 1.20961 0.93545 0.97774 0.99124 1.21302 0.95698 0.98133 1.00674 1.17537 0.79109 0.94717 1.01032 1.91523 1.33662 1.96761 1.89589 1.21173 0.94096 0.97459 0.99759 1.22727 0.96736 0.80483 1.02591 0.95055 0.93978 0.98188 0.93739 0.91651 0.92209 0.91719 0.91175 0.89110 0.91192 0.84206 0.84301 0.84399 0.83809 0.91765 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 7.91 59.85 0.47 4.32 16 2 N -0.59 -14.52 2.81 -173.09 -0.49 -15.00 16 3 C -0.26 -7.04 9.58 -15.06 -0.14 -7.19 16 4 H 0.07 1.85 7.82 -52.49 -0.41 1.44 16 5 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 6 N -0.91 -26.37 10.67 55.49 0.59 -25.78 16 7 Si 0.91 21.99 29.57 -169.99 -5.03 16.96 16 8 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 C 0.17 3.38 2.75 -67.59 -0.19 3.20 16 12 H 0.06 1.39 7.87 -51.93 -0.41 0.98 16 13 C -0.13 -2.13 5.13 -26.69 -0.14 -2.27 16 14 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 15 C 0.09 1.03 5.20 -3.71 -0.02 1.02 16 16 N -0.60 -9.19 2.97 -173.62 -0.51 -9.70 16 17 C 0.55 9.01 7.29 -12.33 -0.09 8.92 16 18 O -0.53 -10.96 16.42 5.31 0.09 -10.87 16 19 C -0.09 -1.09 5.19 -104.98 -0.54 -1.64 16 20 C -0.11 -0.96 7.32 -39.18 -0.29 -1.24 16 21 C -0.10 -0.69 10.03 -39.65 -0.40 -1.08 16 22 C -0.14 -1.12 10.02 -39.43 -0.40 -1.52 16 23 C 0.10 1.01 7.29 -39.47 -0.29 0.73 16 24 F -0.14 -1.55 17.26 2.25 0.04 -1.51 16 25 C -0.11 -1.29 9.67 -39.11 -0.38 -1.67 16 26 C 0.10 1.87 5.80 -3.49 -0.02 1.85 16 27 H 0.03 0.82 7.33 -51.93 -0.38 0.44 16 28 H 0.04 1.09 7.35 -51.93 -0.38 0.71 16 29 H 0.00 -0.01 6.46 -51.93 -0.34 -0.34 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.94 6.72 -51.92 -0.35 0.59 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.83 4.21 -51.93 -0.22 0.61 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.14 1.05 6.57 -52.48 -0.34 0.71 16 38 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 39 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.06 1.22 7.53 -51.93 -0.39 0.83 16 42 H 0.09 2.10 7.03 -51.93 -0.36 1.74 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -32.05 339.35 -8.54 -40.59 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -5.68 Total: -1.51 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.66 Total: 1.71 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.41 Total: -50.49 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.05 -8.54 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027281306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.946 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds