Wall clock time and date at job start Fri Apr 10 2020 21:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35292 * 116.99986 * 2 1 4 4 N 1.32472 * 119.02073 * 179.97438 * 3 2 1 5 5 C 1.32017 * 120.91292 * 179.97438 * 4 3 2 6 6 C 1.40052 * 118.99179 * 0.02562 * 5 4 3 7 7 C 1.47629 * 120.88525 * 179.97438 * 6 5 4 8 8 O 1.21570 * 119.99753 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99981 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99617 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46813 * 180.02562 * 10 9 7 12 12 H 1.08994 * 110.88281 * 302.57261 * 11 10 9 13 13 C 1.55158 * 111.00273 * 178.64563 * 11 10 9 14 14 C 1.54318 * 102.94030 * 206.42412 * 13 11 10 15 15 N 1.47019 * 107.27702 * 22.19355 * 14 13 11 16 16 C 1.36936 * 125.65469 * 181.02332 * 15 14 13 17 17 H 1.07996 * 120.00330 * 173.98022 * 16 15 14 18 18 C 1.38810 * 119.99701 * 353.98192 * 16 15 14 19 19 N 1.31627 * 119.99924 * 6.84753 * 18 16 15 20 20 Si 1.86801 * 120.00131 * 186.84743 * 18 16 15 21 21 H 1.48505 * 109.47023 * 94.98405 * 20 18 16 22 22 H 1.48500 * 109.47309 * 214.98672 * 20 18 16 23 23 H 1.48498 * 109.47112 * 334.98619 * 20 18 16 24 24 C 1.47431 * 108.69905 * 1.06159 * 15 14 13 25 25 C 1.40064 * 118.23235 * 359.97438 * 6 5 4 26 26 N 1.32012 * 118.98704 * 359.97438 * 25 6 5 27 27 H 1.09001 * 109.46719 * 299.99650 * 1 2 3 28 28 H 1.08993 * 109.47312 * 59.99975 * 1 2 3 29 29 H 1.09004 * 109.46759 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.50403 * 179.97438 * 5 4 3 31 31 H 0.96997 * 119.99481 * 0.02562 * 9 7 6 32 32 H 1.08999 * 109.46858 * 299.99377 * 10 9 7 33 33 H 1.08999 * 109.47497 * 59.99828 * 10 9 7 34 34 H 1.08998 * 110.72080 * 324.78655 * 13 11 10 35 35 H 1.09001 * 110.71715 * 88.06284 * 13 11 10 36 36 H 1.09011 * 109.88248 * 262.77834 * 14 13 11 37 37 H 1.09000 * 110.01224 * 141.68564 * 14 13 11 38 38 H 0.97002 * 119.99490 * 179.97438 * 19 18 16 39 39 H 1.08997 * 110.36514 * 217.03399 * 24 15 14 40 40 H 1.08993 * 110.45939 * 94.75636 * 24 15 14 41 41 H 1.08002 * 120.50438 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 3.3671 1.2522 0.0005 5 6 4.0050 2.4080 0.0000 6 6 3.2604 3.5942 -0.0005 7 6 3.9306 4.9096 -0.0005 8 8 5.1446 4.9732 -0.0005 9 7 3.1965 6.0400 -0.0015 10 6 3.8616 7.3453 -0.0021 11 6 2.8078 8.4546 -0.0026 12 1 2.1428 8.3583 -0.8607 13 6 3.4747 9.8551 0.0310 14 6 2.3959 10.7357 0.6959 15 7 1.5135 9.8424 1.4607 16 6 0.4159 10.2302 2.1819 17 1 -0.2256 9.4865 2.6310 18 6 0.1279 11.5794 2.3357 19 7 0.8278 12.4807 1.6797 20 14 -1.2529 12.1159 3.4736 21 1 -0.6937 12.4460 4.8092 22 1 -1.9234 13.3140 2.9078 23 1 -2.2393 11.0141 3.6087 24 6 2.0065 8.4598 1.3231 25 6 1.8630 3.4994 -0.0010 26 7 1.3029 2.3039 -0.0015 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 5.0845 2.4384 0.0009 31 1 2.2278 5.9891 -0.0019 32 1 4.4839 7.4363 0.8882 33 1 4.4848 7.4352 -0.8918 34 1 4.3823 9.8357 0.6343 35 1 3.6890 10.2045 -0.9790 36 1 1.8213 11.2588 -0.0686 37 1 2.8639 11.4569 1.3659 38 1 0.6263 13.4235 1.7869 39 1 1.1704 7.7631 1.2637 40 1 2.6556 8.2018 2.1598 41 1 1.2530 4.3906 -0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028907883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:43:38 Heat of formation + Delta-G solvation = 10.720042 kcal Electronic energy + Delta-G solvation = -24242.251649 eV Core-core repulsion = 20545.056670 eV Total energy + Delta-G solvation = -3697.194978 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.76011 -39.81862 -38.56661 -37.66178 -34.97890 -34.25041 -32.73774 -31.94689 -29.84244 -28.49973 -27.92356 -25.77265 -25.14795 -24.57079 -23.33447 -21.15464 -20.03934 -19.93585 -19.27513 -18.44864 -17.93614 -16.87836 -16.83655 -15.94978 -15.55199 -15.45848 -15.00056 -14.87188 -14.61851 -14.35374 -14.10977 -13.88159 -13.56137 -13.12230 -12.45246 -12.41065 -12.23650 -12.06235 -11.82459 -11.73923 -11.48333 -11.40165 -10.95495 -10.83593 -10.53817 -10.23674 -10.09613 -9.96264 -9.89562 -9.70690 -9.68442 -9.53700 -9.09230 -8.62370 -6.87641 -5.77131 -3.09889 0.14743 0.58633 2.08735 2.61534 2.96231 3.36945 3.42217 3.43404 3.44214 3.48745 4.01498 4.20871 4.41979 4.45167 4.60777 4.79243 4.84902 5.02551 5.10813 5.16686 5.23349 5.33500 5.48017 5.58113 5.63504 5.82151 5.96105 5.98515 6.18625 6.27838 6.28438 6.41758 6.47387 6.59856 6.61051 6.84117 7.31585 7.50958 7.54799 7.59323 7.78255 7.99952 8.21518 9.17108 9.77766 10.43842 11.34991 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.017428 B = 0.002823 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.245829 B = 9917.744632 C =11300.201577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.285 6.285 3 C 0.515 3.485 4 N -0.526 5.526 5 C 0.250 3.750 6 C -0.281 4.281 7 C 0.572 3.428 8 O -0.536 6.536 9 N -0.717 5.717 10 C 0.133 3.867 11 C -0.120 4.120 12 H 0.080 0.920 13 C -0.134 4.134 14 C 0.176 3.824 15 N -0.606 5.606 16 C -0.232 4.232 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.142 3.858 25 C 0.226 3.774 26 N -0.568 5.568 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.192 0.808 31 H 0.400 0.600 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.047 0.953 38 H 0.253 0.747 39 H 0.034 0.966 40 H 0.020 0.980 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.185 -19.926 -5.928 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.185 6.185 3 C 0.214 3.786 4 N -0.251 5.251 5 C 0.082 3.918 6 C -0.290 4.290 7 C 0.357 3.643 8 O -0.414 6.414 9 N -0.368 5.368 10 C 0.010 3.990 11 C -0.139 4.139 12 H 0.099 0.901 13 C -0.173 4.173 14 C 0.051 3.949 15 N -0.332 5.332 16 C -0.360 4.360 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.015 3.985 25 C 0.059 3.941 26 N -0.297 5.297 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.208 0.792 31 H 0.235 0.765 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.038 0.962 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.489 -20.909 -5.868 21.859 hybrid contribution -1.143 1.311 0.624 1.848 sum 1.345 -19.598 -5.244 20.332 Atomic orbital electron populations 1.23098 0.75070 1.03932 1.03313 1.86078 1.23882 1.22558 1.86024 1.21007 0.86360 0.84932 0.86322 1.67758 1.07265 1.29930 1.20168 1.23399 1.01284 0.84172 0.82925 1.21644 0.96156 0.96930 1.14242 1.17570 0.86794 0.83083 0.76803 1.90800 1.13138 1.87249 1.50218 1.45963 1.10379 1.06063 1.74412 1.21475 0.95197 0.79917 1.02424 1.22645 0.96817 0.94323 1.00159 0.90134 1.22850 0.99486 0.94353 1.00600 1.21169 0.88797 0.90761 0.94178 1.44467 1.30133 1.00695 1.57926 1.19044 1.00935 0.91275 1.24725 0.90466 1.24830 0.99589 0.95753 1.00134 1.69980 1.42394 1.00355 1.43908 0.86128 0.81151 0.78049 0.80607 1.21589 1.21752 1.20631 1.21567 0.95003 0.88829 0.93072 1.23265 0.91447 0.94760 0.84636 1.68094 1.40991 0.99016 1.21626 0.91455 0.91501 0.87562 0.79156 0.76495 0.90939 0.91246 0.92083 0.91895 0.93903 0.93532 0.93706 0.94801 0.96206 0.80493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.35 101.05 1.05 1.31 16 2 O -0.29 -2.94 10.55 -17.57 -0.19 -3.13 16 3 C 0.51 5.85 8.48 -90.99 -0.77 5.08 16 4 N -0.53 -6.18 10.45 -14.39 -0.15 -6.33 16 5 C 0.25 2.59 10.87 -16.79 -0.18 2.40 16 6 C -0.28 -2.87 5.90 -104.70 -0.62 -3.49 16 7 C 0.57 6.85 7.78 -12.42 -0.10 6.75 16 8 O -0.54 -8.08 16.44 5.30 0.09 -8.00 16 9 N -0.72 -7.94 5.36 -61.32 -0.33 -8.26 16 10 C 0.13 1.71 5.12 -4.04 -0.02 1.69 16 11 C -0.12 -1.81 3.11 -88.47 -0.27 -2.08 16 12 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 13 C -0.13 -2.30 6.42 -24.90 -0.16 -2.46 16 14 C 0.18 4.09 5.38 -3.07 -0.02 4.07 16 15 N -0.61 -14.81 3.39 -170.07 -0.58 -15.39 16 16 C -0.23 -6.27 10.26 -15.06 -0.15 -6.43 16 17 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 18 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 19 N -0.92 -26.54 10.36 55.49 0.57 -25.96 16 20 Si 0.91 21.67 29.56 -169.99 -5.02 16.65 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.14 2.65 6.41 -2.52 -0.02 2.64 16 25 C 0.23 2.05 10.81 -16.79 -0.18 1.87 16 26 N -0.57 -5.87 9.19 -14.39 -0.13 -6.00 16 27 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.19 1.66 7.74 -52.49 -0.41 1.25 16 31 H 0.40 3.61 6.46 -40.82 -0.26 3.35 16 32 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.99 8.04 -51.93 -0.42 0.58 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.04 1.10 7.54 -51.92 -0.39 0.71 16 37 H 0.05 1.22 7.36 -51.93 -0.38 0.83 16 38 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 41 H 0.18 1.11 6.53 -52.49 -0.34 0.76 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -33.43 345.79 -7.61 -41.04 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.54 Total: -0.90 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: -1.54 Total: 11.08 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -0.61 Total: -61.95 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.10 Total: -11.12 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.43 -7.61 -41.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028907883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.758 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds