Wall clock time and date at job start Fri Apr 10 2020 21:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34776 * 119.99976 * 2 1 4 4 O 1.21279 * 120.00307 * 185.45902 * 3 2 1 5 5 C 1.50708 * 119.99947 * 5.45551 * 3 2 1 6 6 H 1.08999 * 109.46512 * 343.93641 * 5 3 2 7 7 F 1.39900 * 109.47006 * 103.93611 * 5 3 2 8 8 C 1.50694 * 109.47121 * 223.93370 * 5 3 2 9 9 C 1.38239 * 120.00294 * 294.72842 * 8 5 3 10 10 C 1.38236 * 120.00038 * 179.76411 * 9 8 5 11 11 C 1.38241 * 119.99937 * 0.48594 * 10 9 8 12 12 C 1.38235 * 119.99958 * 359.78853 * 11 10 9 13 13 C 1.38239 * 120.00255 * 359.95671 * 12 11 10 14 14 C 1.46501 * 120.00343 * 180.02562 * 2 1 3 15 15 H 1.08994 * 110.89022 * 182.42711 * 14 2 1 16 16 C 1.55403 * 111.06674 * 306.20820 * 14 2 1 17 17 C 1.54326 * 102.82792 * 153.48369 * 16 14 2 18 18 N 1.47025 * 107.40264 * 337.98181 * 17 16 14 19 19 C 1.36934 * 125.64988 * 178.82891 * 18 17 16 20 20 H 1.07998 * 120.00352 * 180.02562 * 19 18 17 21 21 C 1.38816 * 119.99852 * 0.02562 * 19 18 17 22 22 N 1.31621 * 120.00199 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99992 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47024 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46814 * 119.99704 * 23 21 19 26 26 H 1.48497 * 109.47082 * 240.00025 * 23 21 19 27 27 C 1.47426 * 108.70140 * 358.85722 * 18 17 16 28 28 H 1.09003 * 109.47170 * 275.51513 * 1 2 3 29 29 H 1.09002 * 109.47153 * 35.51479 * 1 2 3 30 30 H 1.09001 * 109.47046 * 155.51412 * 1 2 3 31 31 H 1.07998 * 119.99777 * 0.02562 * 9 8 5 32 32 H 1.07998 * 120.00264 * 180.24821 * 10 9 8 33 33 H 1.07995 * 120.00040 * 179.76628 * 11 10 9 34 34 H 1.08003 * 120.00371 * 179.97438 * 12 11 10 35 35 H 1.07992 * 120.00173 * 180.02562 * 13 12 11 36 36 H 1.09003 * 110.69460 * 35.20185 * 16 14 2 37 37 H 1.08995 * 110.85533 * 271.84757 * 16 14 2 38 38 H 1.08993 * 109.88741 * 218.48155 * 17 16 14 39 39 H 1.09005 * 109.87801 * 97.46920 * 17 16 14 40 40 H 0.96998 * 120.00005 * 179.97438 * 22 21 19 41 41 H 1.09000 * 110.36334 * 142.96929 * 27 18 17 42 42 H 1.08997 * 110.36636 * 265.29682 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3475 1.1696 -0.0999 5 6 1.3904 2.4694 0.1241 6 1 0.3333 2.3018 -0.0821 7 9 1.5387 2.9707 1.4218 8 6 1.9438 3.4630 -0.8645 9 6 3.2429 3.9175 -0.7342 10 6 3.7521 4.8253 -1.6439 11 6 2.9590 5.2863 -2.6781 12 6 1.6582 4.8362 -2.8051 13 6 1.1506 3.9244 -1.8985 14 6 2.1975 -1.2687 -0.0006 15 1 3.2729 -1.0965 0.0426 16 6 1.7350 -2.1813 1.1691 17 6 2.0395 -3.5984 0.6391 18 7 2.1001 -3.5157 -0.8276 19 6 2.3709 -4.5566 -1.6751 20 1 2.3929 -4.3923 -2.7423 21 6 2.6173 -5.8229 -1.1625 22 7 2.5900 -6.0232 0.1381 23 14 2.9874 -7.2427 -2.3187 24 1 2.9594 -6.7584 -3.7222 25 1 4.3323 -7.7928 -2.0121 26 1 1.9655 -8.3053 -2.1407 27 6 1.8216 -2.1264 -1.2346 28 1 -0.3634 0.0988 1.0229 29 1 -0.3633 0.8365 -0.5970 30 1 -0.3633 -0.9352 -0.4259 31 1 3.8613 3.5601 0.0759 32 1 4.7682 5.1773 -1.5445 33 1 3.3556 5.9983 -3.3866 34 1 1.0384 5.1966 -3.6128 35 1 0.1345 3.5724 -1.9979 36 1 0.6676 -2.0598 1.3536 37 1 2.3095 -1.9757 2.0723 38 1 1.2477 -4.2846 0.9393 39 1 2.9967 -3.9428 1.0308 40 1 2.7618 -6.9082 0.4962 41 1 2.4384 -1.8509 -2.0901 42 1 0.7649 -2.0054 -1.4729 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033460452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:42:20 Heat of formation + Delta-G solvation = -15.868974 kcal Electronic energy + Delta-G solvation = -25159.191017 eV Core-core repulsion = 21440.923091 eV Total energy + Delta-G solvation = -3718.267926 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.06738 -40.09458 -39.08430 -37.35392 -34.97964 -32.73957 -32.02257 -31.09573 -29.35928 -28.15740 -27.25719 -26.39813 -24.40712 -22.85176 -22.27776 -20.55577 -20.15277 -19.00857 -17.85036 -17.39375 -17.03352 -16.58840 -16.17511 -15.79887 -14.94721 -14.73092 -14.53127 -14.31907 -14.31023 -14.10193 -13.59385 -13.13669 -13.07294 -12.89088 -12.69279 -12.50929 -12.37399 -12.20210 -12.04068 -11.77982 -11.31221 -11.08588 -10.97146 -10.92348 -10.81632 -10.33861 -10.08791 -9.87636 -9.77552 -9.68911 -9.09430 -9.05127 -8.66849 -8.48511 -6.88015 -5.74472 -3.08945 1.00130 1.22289 2.41548 2.84336 3.38821 3.44473 3.46892 3.56367 4.11154 4.15442 4.31265 4.48262 4.74162 4.79844 4.92594 5.01832 5.05394 5.23898 5.27648 5.37336 5.40576 5.46941 5.56651 5.62376 5.67456 5.68476 5.79582 5.85438 6.14380 6.19402 6.20899 6.30923 6.32645 6.42898 6.50152 6.61861 6.75203 6.84700 7.37741 7.52155 7.56253 7.78896 8.04081 8.21441 9.17924 9.77734 10.42245 11.37103 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.023371 B = 0.003173 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.754199 B = 8823.430954 C = 9362.456613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.592 5.592 3 C 0.495 3.505 4 O -0.516 6.516 5 C 0.123 3.877 6 H 0.110 0.890 7 F -0.184 7.184 8 C -0.127 4.127 9 C -0.067 4.067 10 C -0.126 4.126 11 C -0.108 4.108 12 C -0.128 4.128 13 C -0.097 4.097 14 C 0.121 3.879 15 H 0.107 0.893 16 C -0.151 4.151 17 C 0.179 3.821 18 N -0.603 5.603 19 C -0.229 4.229 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.913 3.087 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.131 3.869 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.050 0.950 40 H 0.252 0.748 41 H 0.042 0.958 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.770 21.577 -1.363 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.324 5.324 3 C 0.280 3.720 4 O -0.391 6.391 5 C 0.084 3.916 6 H 0.128 0.872 7 F -0.164 7.164 8 C -0.127 4.127 9 C -0.085 4.085 10 C -0.144 4.144 11 C -0.126 4.126 12 C -0.146 4.146 13 C -0.115 4.115 14 C 0.018 3.982 15 H 0.125 0.875 16 C -0.191 4.191 17 C 0.054 3.946 18 N -0.330 5.330 19 C -0.357 4.357 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.744 3.256 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.004 3.996 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -5.069 21.330 -1.365 21.966 hybrid contribution 0.074 -0.837 -0.434 0.946 sum -4.995 20.492 -1.798 21.169 Atomic orbital electron populations 1.21952 0.79644 1.03982 1.02019 1.47844 1.07100 1.05890 1.71578 1.20645 0.88361 0.85185 0.77848 1.90713 1.13782 1.86633 1.47948 1.20425 1.01536 0.90728 0.78892 0.87227 1.92904 1.97300 1.88248 1.37973 1.19774 0.95837 0.99507 0.97622 1.21127 0.94179 0.94435 0.98771 1.21195 1.00099 0.97871 0.95191 1.21256 0.94217 0.99339 0.97759 1.21082 0.96009 0.98163 0.99332 1.20976 0.99419 0.96947 0.94132 1.22588 0.97381 0.80660 0.97573 0.87483 1.23283 1.00404 0.98254 0.97109 1.21156 1.00993 0.89290 0.83199 1.44392 1.83161 1.03011 1.02390 1.19103 1.41051 0.86610 0.88975 0.90293 1.24819 1.01840 0.97566 0.96129 1.69965 1.55587 1.21440 1.09873 0.86020 0.77615 0.82314 0.79664 1.20471 1.21684 1.21717 1.21752 0.97472 0.85991 0.94370 0.92042 0.91459 0.89171 0.85011 0.85653 0.85875 0.85662 0.85650 0.91973 0.91762 0.93555 0.93229 0.93721 0.93978 0.96015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 8.55 59.84 0.51 1.23 16 2 N -0.59 -8.83 2.91 -171.33 -0.50 -9.33 16 3 C 0.50 7.66 7.01 -10.98 -0.08 7.59 16 4 O -0.52 -9.77 14.59 5.56 0.08 -9.69 16 5 C 0.12 1.49 3.66 -29.03 -0.11 1.38 16 6 H 0.11 0.95 5.33 -51.93 -0.28 0.67 16 7 F -0.18 -2.47 16.91 2.25 0.04 -2.43 16 8 C -0.13 -1.52 5.00 -104.62 -0.52 -2.05 16 9 C -0.07 -0.85 8.55 -39.58 -0.34 -1.19 16 10 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 11 C -0.11 -0.99 10.05 -39.58 -0.40 -1.38 16 12 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 13 C -0.10 -0.94 9.67 -39.58 -0.38 -1.33 16 14 C 0.12 2.24 3.43 -65.65 -0.23 2.01 16 15 H 0.11 2.22 7.04 -51.93 -0.37 1.86 16 16 C -0.15 -2.82 6.54 -24.76 -0.16 -2.98 16 17 C 0.18 4.29 5.37 -3.06 -0.02 4.28 16 18 N -0.60 -15.36 3.39 -170.07 -0.58 -15.93 16 19 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 20 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 22 N -0.92 -26.92 10.31 55.49 0.57 -26.35 16 23 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.13 2.73 6.79 -2.53 -0.02 2.71 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.52 6.28 -51.93 -0.33 0.19 16 30 H 0.09 1.04 6.34 -51.93 -0.33 0.71 16 31 H 0.13 1.80 7.44 -52.49 -0.39 1.41 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.13 0.89 7.95 -52.49 -0.42 0.47 16 36 H 0.06 1.03 7.09 -51.93 -0.37 0.66 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 39 H 0.05 1.33 7.37 -51.93 -0.38 0.95 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.02 0.43 6.34 -51.93 -0.33 0.10 16 LS Contribution 342.87 15.07 5.17 5.17 Total: -1.00 -32.96 342.87 -8.68 -41.64 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.66 Total: -0.30 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -2.78 Total: 0.18 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.50 Total: -51.61 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.96 -8.68 -41.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033460452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.766 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds