Wall clock time and date at job start Fri Apr 10 2020 21:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00071 * 2 1 4 4 H 1.48500 * 109.47071 * 270.00005 * 3 2 1 5 5 H 1.48493 * 109.47086 * 29.99772 * 3 2 1 6 6 H 1.48499 * 109.47003 * 150.00032 * 3 2 1 7 7 C 1.38818 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00294 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99648 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99930 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47345 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47070 * 305.00306 * 11 10 9 13 13 C 1.52997 * 109.46817 * 65.00126 * 11 10 9 14 14 C 1.52999 * 109.47317 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47159 * 300.00546 * 14 13 11 16 16 C 1.52997 * 109.47452 * 59.99536 * 15 14 13 17 17 C 1.53000 * 109.47233 * 184.99932 * 11 10 9 18 18 H 1.08992 * 109.47399 * 300.00166 * 17 11 10 19 19 N 1.46499 * 109.46840 * 60.00500 * 17 11 10 20 20 C 1.34778 * 119.99771 * 204.99940 * 19 17 11 21 21 O 1.21279 * 120.00041 * 359.97438 * 20 19 17 22 22 C 1.50703 * 119.99935 * 179.97438 * 20 19 17 23 23 C 1.50699 * 109.47042 * 179.97438 * 22 20 19 24 24 C 1.41378 * 126.57906 * 90.00247 * 23 22 20 25 25 C 1.34513 * 106.84303 * 179.97438 * 24 23 22 26 26 O 1.34302 * 108.42168 * 0.02562 * 25 24 23 27 27 C 1.34313 * 109.47497 * 359.76826 * 26 25 24 28 28 H 0.96996 * 119.99974 * 0.02562 * 1 2 3 29 29 H 0.97008 * 120.00268 * 0.02562 * 9 7 2 30 30 H 1.09008 * 109.47020 * 60.00233 * 10 9 7 31 31 H 1.08997 * 109.47417 * 300.00227 * 10 9 7 32 32 H 1.08996 * 109.47853 * 300.00202 * 13 11 10 33 33 H 1.09002 * 109.47153 * 60.00231 * 13 11 10 34 34 H 1.09002 * 109.46716 * 60.00091 * 14 13 11 35 35 H 1.09000 * 109.47486 * 180.02562 * 14 13 11 36 36 H 1.09001 * 109.46812 * 179.97438 * 15 14 13 37 37 H 1.09002 * 109.46935 * 299.99411 * 15 14 13 38 38 H 1.09002 * 109.46695 * 59.99734 * 16 15 14 39 39 H 1.08993 * 109.47194 * 179.97438 * 16 15 14 40 40 H 0.97006 * 120.00568 * 24.99713 * 19 17 11 41 41 H 1.08995 * 109.47091 * 300.00103 * 22 20 19 42 42 H 1.08999 * 109.47030 * 59.99811 * 22 20 19 43 43 H 1.07999 * 126.58246 * 359.92647 * 24 23 22 44 44 H 1.08000 * 125.79401 * 180.02562 * 25 24 23 45 45 H 1.07995 * 125.78940 * 180.23683 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0638 -4.8197 0.0022 12 1 0.3800 -4.7126 0.8443 13 6 0.2686 -4.8115 -1.3048 14 6 -0.7252 -5.9748 -1.3046 15 6 0.0362 -7.2960 -1.1790 16 6 0.8314 -7.3042 0.1280 17 6 1.8247 -6.1412 0.1279 18 1 2.5085 -6.2482 -0.7140 19 7 2.5861 -6.1490 1.3795 20 6 3.6857 -6.9198 1.4945 21 8 4.0447 -7.6071 0.5619 22 6 4.4693 -6.9274 2.7817 23 6 5.6422 -7.8645 2.6502 24 6 6.9381 -7.5332 2.1922 25 6 7.6675 -8.6625 2.2361 26 8 6.8865 -9.6547 2.6933 27 6 5.6584 -9.1756 2.9506 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3881 0.0016 30 1 2.6854 -3.7141 0.8912 31 1 2.6840 -3.7150 -0.8888 32 1 -0.2735 -3.8701 -1.3945 33 1 0.9524 -4.9186 -2.1468 34 1 -1.4091 -5.8681 -0.4625 35 1 -1.2914 -5.9692 -2.2359 36 1 -0.6719 -8.1247 -1.1784 37 1 0.7200 -7.4026 -2.0211 38 1 0.1474 -7.1975 0.9700 39 1 1.3733 -8.2456 0.2177 40 1 2.2988 -5.5995 2.1255 41 1 4.8299 -5.9209 2.9936 42 1 3.8268 -7.2621 3.5962 43 1 7.2771 -6.5603 1.8684 44 1 8.7053 -8.7556 1.9519 45 1 4.8248 -9.7465 3.3319 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:44:03 Heat of formation + Delta-G solvation = -32.717191 kcal Electronic energy + Delta-G solvation = -25191.889539 eV Core-core repulsion = 21596.351325 eV Total energy + Delta-G solvation = -3595.538214 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.63475 -40.01592 -38.16982 -34.62614 -34.12897 -33.97475 -31.89252 -30.70286 -29.67252 -29.33790 -27.54468 -25.17938 -23.07240 -22.43293 -21.69930 -20.82848 -20.62227 -20.19895 -19.51246 -17.68295 -17.24547 -16.82859 -16.03056 -15.86149 -15.30049 -14.88273 -14.71840 -14.40943 -14.22290 -13.78349 -13.63044 -13.41122 -13.12809 -12.94257 -12.86479 -12.80045 -12.48400 -12.33391 -11.83084 -11.65222 -11.50516 -11.07018 -10.89289 -10.87680 -10.71436 -10.38026 -10.22657 -10.09390 -9.99284 -9.93086 -9.65303 -9.50669 -8.90880 -8.79761 -8.62527 -6.92030 -5.77631 -3.05775 1.67823 2.44844 2.74785 3.03953 3.40708 3.42781 3.48165 3.49468 4.56609 4.61871 4.65909 4.81073 4.87700 4.90024 5.00592 5.13775 5.26361 5.28003 5.37715 5.39314 5.57366 5.58586 5.61635 5.65568 5.69624 5.76073 5.89971 5.90898 6.04626 6.12843 6.15949 6.23115 6.26325 6.29957 6.38312 6.41047 6.57327 6.61835 6.69878 6.79803 6.92412 7.00425 7.63725 7.69599 8.35229 8.41634 9.52881 10.10882 10.45757 11.45262 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.012283 B = 0.003516 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.968910 B = 7961.935927 C = 9897.923353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.159 3.841 11 C -0.099 4.099 12 H 0.074 0.926 13 C -0.107 4.107 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.155 3.845 18 H 0.086 0.914 19 N -0.722 5.722 20 C 0.514 3.486 21 O -0.537 6.537 22 C -0.074 4.074 23 C -0.158 4.158 24 C -0.197 4.197 25 C -0.047 4.047 26 O -0.179 6.179 27 C -0.031 4.031 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.019 0.981 31 H 0.017 0.983 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.402 0.598 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.147 0.853 44 H 0.200 0.800 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.204 -18.917 5.715 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.031 3.969 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.164 4.164 17 C 0.050 3.950 18 H 0.104 0.896 19 N -0.373 5.373 20 C 0.300 3.700 21 O -0.413 6.413 22 C -0.114 4.114 23 C -0.160 4.160 24 C -0.216 4.216 25 C -0.114 4.114 26 O -0.074 6.074 27 C -0.099 4.099 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.236 0.764 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.164 0.836 44 H 0.217 0.783 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 6.697 -19.580 5.086 21.310 hybrid contribution -0.041 1.569 0.275 1.594 sum 6.656 -18.011 5.362 19.936 Atomic orbital electron populations 1.69652 1.05075 1.25617 1.57910 1.24722 0.95511 0.97629 1.03099 0.86204 0.78648 0.83900 0.77539 1.21744 1.21785 1.20804 1.19222 0.90999 0.84220 1.42509 0.91327 1.42370 1.05814 0.99898 1.89453 1.20657 0.93028 0.85327 0.97845 1.21588 0.97693 0.93454 0.99143 0.90738 1.21492 0.97659 0.98805 0.96559 1.21597 0.98070 0.94553 1.01647 1.21488 0.98736 0.97630 0.97450 1.21873 0.97819 0.98486 0.98194 1.20965 0.92609 0.94703 0.86733 0.89615 1.46117 1.27749 1.46201 1.17197 1.20515 0.80426 0.79493 0.89601 1.90699 1.68405 1.41675 1.40537 1.20025 0.94299 1.00651 0.96425 1.19801 0.95422 0.94631 1.06144 1.21710 0.93673 1.00144 1.06110 1.23934 0.97294 0.85887 1.04282 1.84046 1.20715 1.37807 1.64875 1.23743 0.86593 0.94134 1.05427 0.93542 0.78225 0.96350 0.96497 0.90258 0.92096 0.92038 0.92124 0.92229 0.91948 0.91978 0.91925 0.76380 0.87734 0.88176 0.83557 0.78280 0.78472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.03 5.33 -59.91 -0.32 -18.35 16 10 C 0.16 3.13 5.56 -4.04 -0.02 3.11 16 11 C -0.10 -1.54 1.80 -90.62 -0.16 -1.70 16 12 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.11 -1.64 5.08 -26.73 -0.14 -1.77 16 14 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 15 C -0.11 -1.33 5.92 -26.73 -0.16 -1.49 16 16 C -0.13 -1.52 5.49 -26.76 -0.15 -1.67 16 17 C 0.15 2.13 1.90 -67.96 -0.13 2.01 16 18 H 0.09 1.38 7.58 -51.93 -0.39 0.98 16 19 N -0.72 -8.96 4.31 -53.83 -0.23 -9.19 16 20 C 0.51 6.80 7.79 -10.98 -0.09 6.71 16 21 O -0.54 -9.19 15.70 5.56 0.09 -9.10 16 22 C -0.07 -0.74 6.22 -29.03 -0.18 -0.92 16 23 C -0.16 -1.80 4.66 -104.74 -0.49 -2.29 16 24 C -0.20 -2.22 10.87 -39.70 -0.43 -2.65 16 25 C -0.05 -0.47 12.09 29.42 0.36 -0.11 16 26 O -0.18 -2.00 10.65 5.69 0.06 -1.94 16 27 C -0.03 -0.33 12.01 29.42 0.35 0.03 16 28 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.38 9.88 6.85 -40.82 -0.28 9.60 16 30 H 0.02 0.36 7.31 -51.92 -0.38 -0.02 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 1.41 7.18 -51.93 -0.37 1.03 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.40 4.31 8.40 -40.82 -0.34 3.97 16 41 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.20 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.20 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -33.70 367.90 -8.03 -41.73 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -7.23 Total: 10.85 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -1.64 Total: -9.67 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.17 Total: -54.69 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.15 Total: -11.04 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.70 -8.03 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.012 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds