Wall clock time and date at job start Fri Apr 10 2020 21:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34512 * 125.79049 * 2 1 4 4 C 1.41382 * 106.84451 * 179.79349 * 3 2 1 5 5 C 1.34514 * 106.84000 * 0.37275 * 4 3 2 6 6 C 1.50701 * 125.79378 * 179.88677 * 5 4 3 7 7 C 1.50698 * 109.46917 * 89.71813 * 6 5 4 8 8 O 1.21285 * 120.00420 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99981 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99756 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46927 * 179.72477 * 10 9 7 12 12 H 1.08997 * 110.63912 * 54.30042 * 11 10 9 13 13 C 1.54324 * 110.72151 * 291.16116 * 11 10 9 14 14 N 1.47022 * 107.27229 * 219.44582 * 13 11 10 15 15 C 1.36934 * 125.64867 * 178.90960 * 14 13 11 16 16 H 1.08005 * 120.00053 * 341.50179 * 15 14 13 17 17 C 1.38817 * 119.99819 * 161.51511 * 15 14 13 18 18 N 1.31618 * 119.99743 * 157.61603 * 17 15 14 19 19 Si 1.86798 * 120.00051 * 337.60832 * 17 15 14 20 20 H 1.48496 * 109.46808 * 84.53901 * 19 17 15 21 21 H 1.48502 * 109.47003 * 204.54019 * 19 17 15 22 22 H 1.48502 * 109.47011 * 324.54176 * 19 17 15 23 23 C 1.47422 * 108.70088 * 358.93693 * 14 13 11 24 24 C 1.55124 * 104.94491 * 24.00500 * 23 14 13 25 25 H 1.08998 * 110.93285 * 81.21119 * 24 23 14 26 26 C 1.53002 * 111.16492 * 205.12987 * 24 23 14 27 27 O 1.34302 * 108.42009 * 359.62695 * 5 4 3 28 28 H 1.09004 * 109.47135 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46661 * 299.99652 * 1 2 3 30 30 H 1.08995 * 109.46852 * 59.99767 * 1 2 3 31 31 H 1.08006 * 126.58070 * 0.04535 * 3 2 1 32 32 H 1.08002 * 126.58742 * 180.23785 * 4 3 2 33 33 H 1.09001 * 109.47026 * 329.72095 * 6 5 4 34 34 H 1.09001 * 109.47313 * 209.71902 * 6 5 4 35 35 H 0.96996 * 120.00108 * 359.72923 * 9 7 6 36 36 H 1.08996 * 109.47314 * 299.72591 * 10 9 7 37 37 H 1.09002 * 109.47023 * 59.73273 * 10 9 7 38 38 H 1.09006 * 109.87930 * 338.86145 * 13 11 10 39 39 H 1.08998 * 109.88340 * 100.02288 * 13 11 10 40 40 H 0.96995 * 119.99859 * 179.97438 * 18 17 15 41 41 H 1.08994 * 110.36777 * 142.97083 * 23 14 13 42 42 H 1.09009 * 110.36732 * 265.18032 * 23 14 13 43 43 H 1.08989 * 109.46977 * 172.17035 * 26 24 23 44 44 H 1.09001 * 109.46961 * 292.17516 * 26 24 23 45 45 H 1.09001 * 109.47168 * 52.17081 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 0.0049 5 6 3.5814 -0.7121 -0.0008 6 6 4.7706 -1.6379 -0.0010 7 6 5.1669 -1.9467 1.4198 8 8 4.5447 -1.4632 2.3418 9 7 6.2128 -2.7603 1.6659 10 6 6.5984 -3.0601 3.0472 11 6 7.8018 -4.0050 3.0471 12 1 8.6149 -3.5915 2.4504 13 6 7.3994 -5.4016 2.5282 14 7 8.1062 -6.3935 3.3516 15 6 8.0036 -7.7533 3.2267 16 1 7.1650 -8.1855 2.7009 17 6 8.9772 -8.5762 3.7762 18 7 8.6965 -9.8313 4.0561 19 14 10.6855 -7.9024 4.1180 20 1 10.6962 -7.2289 5.4414 21 1 11.6658 -9.0178 4.1222 22 1 11.0524 -6.9248 3.0621 23 6 8.9433 -5.6818 4.3345 24 6 8.2751 -4.2912 4.4966 25 1 7.4283 -4.3435 5.1809 26 6 9.2880 -3.2423 4.9600 27 8 2.2925 -1.0894 -0.0005 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.9665 2.1204 0.0007 32 1 4.5213 1.2433 0.0098 33 1 5.6040 -1.1586 -0.5146 34 1 4.5107 -2.5632 -0.5151 35 1 6.7081 -3.1502 0.9287 36 1 6.8628 -2.1351 3.5595 37 1 5.7636 -3.5352 3.5625 38 1 6.3224 -5.5376 2.6271 39 1 7.6943 -5.5084 1.4844 40 1 9.3769 -10.4064 4.4397 41 1 8.9481 -6.2146 5.2853 42 1 9.9601 -5.5711 3.9574 43 1 8.8273 -2.2549 4.9314 44 1 9.6032 -3.4668 5.9790 45 1 10.1551 -3.2579 4.2998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101881254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:44:12 Heat of formation + Delta-G solvation = -6.692544 kcal Electronic energy + Delta-G solvation = -24734.655108 eV Core-core repulsion = 21140.245406 eV Total energy + Delta-G solvation = -3594.409701 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.73541 -39.78781 -38.33602 -34.82789 -33.35085 -33.24823 -32.98409 -31.14460 -30.64663 -29.40479 -26.26404 -25.85444 -24.89147 -22.64105 -21.93950 -21.11474 -20.38600 -20.14758 -19.61387 -17.47792 -16.95543 -16.79043 -16.04925 -15.84719 -15.66598 -15.04286 -14.97066 -14.42901 -13.95516 -13.72623 -13.52035 -13.29400 -13.20301 -13.04578 -12.97048 -12.95136 -12.83002 -12.55904 -12.33320 -12.05486 -11.80377 -11.53291 -11.41282 -11.11559 -10.93308 -10.59943 -10.37481 -10.14529 -9.99895 -9.95352 -9.79144 -9.45139 -9.07949 -8.69581 -8.42081 -7.05975 -5.96027 -3.26415 1.51951 2.42242 2.53022 2.68780 3.24499 3.33220 3.46057 3.48264 4.30300 4.53226 4.63845 4.69043 4.84623 4.86652 4.88592 4.95362 4.98279 5.05716 5.11313 5.16944 5.18134 5.40625 5.42568 5.48954 5.60498 5.66088 5.72989 5.80044 5.87435 5.91226 5.99516 6.03065 6.07268 6.21612 6.33545 6.37757 6.38958 6.49051 6.62894 6.73677 6.78265 7.02624 7.41632 7.69870 8.13399 8.30002 8.82111 9.67490 10.16426 11.20157 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.027119 B = 0.002589 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.250173 B =10810.613712 C =11398.007708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.013 4.013 3 C -0.213 4.213 4 C -0.194 4.194 5 C 0.006 3.994 6 C -0.062 4.062 7 C 0.512 3.488 8 O -0.532 6.532 9 N -0.725 5.725 10 C 0.133 3.867 11 C -0.112 4.112 12 H 0.081 0.919 13 C 0.140 3.860 14 N -0.609 5.609 15 C -0.243 4.243 16 H 0.091 0.909 17 C 0.021 3.979 18 N -0.908 5.908 19 Si 0.883 3.117 20 H -0.285 1.285 21 H -0.303 1.303 22 H -0.277 1.277 23 C 0.117 3.883 24 C -0.097 4.097 25 H 0.082 0.918 26 C -0.141 4.141 27 O -0.170 6.170 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.403 0.597 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.029 0.971 40 H 0.263 0.737 41 H 0.059 0.941 42 H 0.026 0.974 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.684 22.072 -9.020 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.232 4.232 4 C -0.213 4.213 5 C -0.045 4.045 6 C -0.102 4.102 7 C 0.297 3.703 8 O -0.408 6.408 9 N -0.376 5.376 10 C 0.010 3.990 11 C -0.131 4.131 12 H 0.099 0.901 13 C 0.015 3.985 14 N -0.336 5.336 15 C -0.370 4.370 16 H 0.109 0.891 17 C -0.177 4.177 18 N -0.552 5.552 19 Si 0.714 3.286 20 H -0.212 1.212 21 H -0.231 1.231 22 H -0.203 1.203 23 C -0.008 4.008 24 C -0.117 4.117 25 H 0.100 0.900 26 C -0.198 4.198 27 O -0.066 6.066 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.237 0.763 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.198 21.843 -8.298 25.111 hybrid contribution 1.480 0.189 -0.154 1.500 sum -7.717 22.032 -8.451 24.827 Atomic orbital electron populations 1.20300 0.85197 1.04059 1.03433 1.22405 0.93961 0.84132 1.05778 1.21496 0.92670 0.99317 1.09747 1.21474 0.98223 0.93643 1.07952 1.21414 0.82652 0.93808 1.06579 1.20107 0.93689 1.00352 0.96055 1.20352 0.80217 0.78913 0.90833 1.90748 1.52594 1.51407 1.46090 1.46000 1.32715 1.49181 1.09748 1.21417 0.97026 0.98580 0.81988 1.22523 0.96574 0.95813 0.98171 0.90064 1.21407 0.96214 0.86749 0.94148 1.44740 1.51991 1.02012 1.34829 1.18635 1.06167 0.77871 1.34281 0.89098 1.25001 0.98178 0.95056 0.99485 1.69846 1.33769 1.06534 1.45034 0.86966 0.86393 0.77064 0.78216 1.21160 1.23062 1.20305 1.22057 0.93792 0.90783 0.94214 1.22344 0.98649 0.95795 0.94911 0.89969 1.21722 0.98795 0.98032 1.01283 1.83942 1.16211 1.35126 1.71357 0.90572 0.89686 0.89772 0.83602 0.83644 0.85843 0.86864 0.76260 0.91465 0.91046 0.94745 0.95322 0.92698 0.92315 0.95612 0.92731 0.92523 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.42 36.00 0.38 -0.13 16 2 C -0.01 -0.14 7.32 -35.63 -0.26 -0.40 16 3 C -0.21 -2.26 10.81 -39.70 -0.43 -2.69 16 4 C -0.19 -2.17 10.81 -39.70 -0.43 -2.60 16 5 C 0.01 0.07 5.81 -35.62 -0.21 -0.14 16 6 C -0.06 -0.56 6.23 -29.04 -0.18 -0.74 16 7 C 0.51 6.40 7.82 -10.99 -0.09 6.31 16 8 O -0.53 -9.09 16.03 5.55 0.09 -9.00 16 9 N -0.72 -8.11 5.43 -60.29 -0.33 -8.44 16 10 C 0.13 1.76 5.00 -4.04 -0.02 1.74 16 11 C -0.11 -1.63 2.45 -88.79 -0.22 -1.84 16 12 H 0.08 1.08 8.04 -51.93 -0.42 0.67 16 13 C 0.14 2.61 6.64 -3.06 -0.02 2.59 16 14 N -0.61 -14.50 3.21 -169.93 -0.54 -15.05 16 15 C -0.24 -6.86 10.57 -15.06 -0.16 -7.02 16 16 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 17 C 0.02 0.62 5.43 -17.43 -0.09 0.53 16 18 N -0.91 -28.05 13.97 55.49 0.78 -27.28 16 19 Si 0.88 22.49 24.27 -169.99 -4.13 18.37 16 20 H -0.28 -6.97 6.49 56.52 0.37 -6.60 16 21 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 22 H -0.28 -6.92 6.66 56.52 0.38 -6.54 16 23 C 0.12 2.48 4.18 -2.41 -0.01 2.47 16 24 C -0.10 -1.56 3.10 -88.36 -0.27 -1.83 16 25 H 0.08 1.32 8.05 -51.93 -0.42 0.91 16 26 C -0.14 -1.84 9.32 37.16 0.35 -1.50 16 27 O -0.17 -2.23 10.65 5.69 0.06 -2.17 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.40 3.51 8.40 -40.82 -0.34 3.17 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 38 H 0.03 0.66 7.73 -51.93 -0.40 0.26 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.06 1.36 6.64 -51.93 -0.34 1.01 16 42 H 0.03 0.57 5.42 -51.92 -0.28 0.29 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -35.90 365.83 -7.54 -43.44 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.31 Total: -0.14 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.67 Total: -5.25 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.10 Total: -50.77 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.15 Total: -11.16 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.13 Total: 18.37 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.90 -7.54 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101881254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.744 kcal (2) G-P(sol) polarization free energy of solvation -35.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds