Wall clock time and date at job start Fri Apr 10 2020 21:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34512 * 125.79049 * 2 1 4 4 C 1.41382 * 106.84451 * 179.79349 * 3 2 1 5 5 C 1.34514 * 106.84000 * 0.37275 * 4 3 2 6 6 C 1.50701 * 125.79378 * 179.88677 * 5 4 3 7 7 C 1.50698 * 109.46917 * 89.71813 * 6 5 4 8 8 O 1.21285 * 120.00420 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99981 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99756 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46927 * 179.72477 * 10 9 7 12 12 H 1.08997 * 110.63912 * 54.30042 * 11 10 9 13 13 C 1.54324 * 110.72151 * 291.16116 * 11 10 9 14 14 N 1.47022 * 107.27229 * 219.44582 * 13 11 10 15 15 C 1.36934 * 125.64867 * 178.90960 * 14 13 11 16 16 H 1.08005 * 120.00053 * 341.50179 * 15 14 13 17 17 C 1.38817 * 119.99819 * 161.51511 * 15 14 13 18 18 N 1.31618 * 119.99743 * 157.61603 * 17 15 14 19 19 Si 1.86798 * 120.00051 * 337.60832 * 17 15 14 20 20 H 1.48496 * 109.46808 * 84.53901 * 19 17 15 21 21 H 1.48502 * 109.47003 * 204.54019 * 19 17 15 22 22 H 1.48502 * 109.47011 * 324.54176 * 19 17 15 23 23 C 1.47422 * 108.70088 * 358.93693 * 14 13 11 24 24 C 1.55124 * 104.94491 * 24.00500 * 23 14 13 25 25 H 1.08998 * 110.93285 * 81.21119 * 24 23 14 26 26 C 1.53002 * 111.16492 * 205.12987 * 24 23 14 27 27 O 1.34302 * 108.42009 * 359.62695 * 5 4 3 28 28 H 1.09004 * 109.47135 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46661 * 299.99652 * 1 2 3 30 30 H 1.08995 * 109.46852 * 59.99767 * 1 2 3 31 31 H 1.08006 * 126.58070 * 0.04535 * 3 2 1 32 32 H 1.08002 * 126.58742 * 180.23785 * 4 3 2 33 33 H 1.09001 * 109.47026 * 329.72095 * 6 5 4 34 34 H 1.09001 * 109.47313 * 209.71902 * 6 5 4 35 35 H 0.96996 * 120.00108 * 359.72923 * 9 7 6 36 36 H 1.08996 * 109.47314 * 299.72591 * 10 9 7 37 37 H 1.09002 * 109.47023 * 59.73273 * 10 9 7 38 38 H 1.09006 * 109.87930 * 338.86145 * 13 11 10 39 39 H 1.08998 * 109.88340 * 100.02288 * 13 11 10 40 40 H 0.96995 * 119.99859 * 179.97438 * 18 17 15 41 41 H 1.08994 * 110.36777 * 142.97083 * 23 14 13 42 42 H 1.09009 * 110.36732 * 265.18032 * 23 14 13 43 43 H 1.08989 * 109.46977 * 172.17035 * 26 24 23 44 44 H 1.09001 * 109.46961 * 292.17516 * 26 24 23 45 45 H 1.09001 * 109.47168 * 52.17081 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 0.0049 5 6 3.5814 -0.7121 -0.0008 6 6 4.7706 -1.6379 -0.0010 7 6 5.1669 -1.9467 1.4198 8 8 4.5447 -1.4632 2.3418 9 7 6.2128 -2.7603 1.6659 10 6 6.5984 -3.0601 3.0472 11 6 7.8018 -4.0050 3.0471 12 1 8.6149 -3.5915 2.4504 13 6 7.3994 -5.4016 2.5282 14 7 8.1062 -6.3935 3.3516 15 6 8.0036 -7.7533 3.2267 16 1 7.1650 -8.1855 2.7009 17 6 8.9772 -8.5762 3.7762 18 7 8.6965 -9.8313 4.0561 19 14 10.6855 -7.9024 4.1180 20 1 10.6962 -7.2289 5.4414 21 1 11.6658 -9.0178 4.1222 22 1 11.0524 -6.9248 3.0621 23 6 8.9433 -5.6818 4.3345 24 6 8.2751 -4.2912 4.4966 25 1 7.4283 -4.3435 5.1809 26 6 9.2880 -3.2423 4.9600 27 8 2.2925 -1.0894 -0.0005 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.9665 2.1204 0.0007 32 1 4.5213 1.2433 0.0098 33 1 5.6040 -1.1586 -0.5146 34 1 4.5107 -2.5632 -0.5151 35 1 6.7081 -3.1502 0.9287 36 1 6.8628 -2.1351 3.5595 37 1 5.7636 -3.5352 3.5625 38 1 6.3224 -5.5376 2.6271 39 1 7.6943 -5.5084 1.4844 40 1 9.3769 -10.4064 4.4397 41 1 8.9481 -6.2146 5.2853 42 1 9.9601 -5.5711 3.9574 43 1 8.8273 -2.2549 4.9314 44 1 9.6032 -3.4668 5.9790 45 1 10.1551 -3.2579 4.2998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101881254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:44:11 Heat of formation + Delta-G solvation = -31.854165 kcal Electronic energy + Delta-G solvation = -24735.746197 eV Core-core repulsion = 21140.245406 eV Total energy + Delta-G solvation = -3595.500791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -43.53482 -40.86243 -39.74074 -36.12277 -34.77425 -34.15002 -33.91913 -32.96837 -31.61104 -30.44606 -27.87042 -27.14979 -25.84266 -24.14196 -22.78249 -22.36363 -21.60236 -21.19641 -20.78731 -18.96783 -18.30896 -17.80518 -17.14428 -16.92680 -16.84162 -16.56627 -16.20223 -15.44177 -15.18731 -15.09695 -14.70406 -14.59600 -14.37472 -14.13498 -14.02286 -13.72974 -13.71617 -13.59299 -13.49180 -13.30369 -12.96357 -12.84797 -12.66200 -12.52542 -12.50222 -12.25789 -11.76654 -11.67828 -11.52511 -11.33683 -11.01049 -10.80974 -10.76945 -10.10077 -9.19642 -9.06051 -8.19624 -5.46133 0.71340 1.30087 1.37493 1.47081 1.59720 1.63716 1.95452 2.35031 2.40573 3.01298 3.29258 3.57433 3.64229 3.76036 3.80547 3.94231 4.03334 4.14554 4.26702 4.28776 4.36691 4.46245 4.49820 4.58223 4.59811 4.71357 4.71633 4.79157 4.80585 4.87168 4.91738 4.93352 5.03335 5.07493 5.07929 5.22496 5.30802 5.33845 5.41191 5.50213 5.66499 5.67031 6.08688 6.23494 6.53575 6.75480 7.22623 7.52911 8.09652 9.00410 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.027119 B = 0.002589 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.250173 B =10810.613712 C =11398.007708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.029 4.029 3 C -0.227 4.227 4 C -0.204 4.204 5 C -0.019 4.019 6 C -0.055 4.055 7 C 0.512 3.488 8 O -0.583 6.583 9 N -0.714 5.714 10 C 0.143 3.857 11 C -0.090 4.090 12 H 0.108 0.892 13 C 0.135 3.865 14 N -0.630 5.630 15 C -0.236 4.236 16 H 0.056 0.944 17 C -0.040 4.040 18 N -0.958 5.958 19 Si 0.949 3.051 20 H -0.270 1.270 21 H -0.309 1.309 22 H -0.264 1.264 23 C 0.108 3.892 24 C -0.089 4.089 25 H 0.077 0.923 26 C -0.135 4.135 27 O -0.196 6.196 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.167 0.833 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.131 0.869 35 H 0.418 0.582 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.024 0.976 39 H 0.040 0.960 40 H 0.262 0.738 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.547 25.309 -9.937 28.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C -0.246 4.246 4 C -0.223 4.223 5 C -0.069 4.069 6 C -0.094 4.094 7 C 0.299 3.701 8 O -0.463 6.463 9 N -0.366 5.366 10 C 0.019 3.981 11 C -0.109 4.109 12 H 0.126 0.874 13 C 0.010 3.990 14 N -0.357 5.357 15 C -0.365 4.365 16 H 0.074 0.926 17 C -0.234 4.234 18 N -0.605 5.605 19 Si 0.777 3.223 20 H -0.196 1.196 21 H -0.237 1.237 22 H -0.189 1.189 23 C -0.016 4.016 24 C -0.109 4.109 25 H 0.096 0.904 26 C -0.193 4.193 27 O -0.094 6.094 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.185 0.815 32 H 0.180 0.820 33 H 0.180 0.820 34 H 0.149 0.851 35 H 0.255 0.745 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.098 0.902 44 H 0.078 0.922 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.046 25.122 -9.250 27.953 hybrid contribution 0.979 -0.818 0.110 1.280 sum -7.067 24.304 -9.139 26.910 Atomic orbital electron populations 1.20471 0.82855 1.04552 1.05045 1.23192 0.95564 0.83891 1.05275 1.21875 0.92653 1.00360 1.09692 1.21850 0.99175 0.93855 1.07443 1.21975 0.82928 0.94796 1.07224 1.20245 0.93989 1.01258 0.93918 1.20927 0.79464 0.77953 0.91767 1.90728 1.54226 1.53435 1.47908 1.45879 1.32564 1.48704 1.09472 1.21184 0.95473 0.98368 0.83086 1.22392 0.97777 0.93466 0.97269 0.87358 1.21597 0.95089 0.87970 0.94302 1.44868 1.52752 1.01260 1.36795 1.18574 1.04841 0.80455 1.32620 0.92614 1.25682 1.01963 0.95411 1.00380 1.69982 1.34840 1.08246 1.47403 0.85905 0.80967 0.76399 0.79005 1.19626 1.23733 1.18866 1.22187 0.94051 0.93125 0.92257 1.22301 0.99007 0.93689 0.95926 0.90420 1.21707 0.98136 0.97922 1.01501 1.83929 1.17132 1.36409 1.71948 0.90637 0.88534 0.87559 0.81541 0.81967 0.81951 0.85060 0.74499 0.90250 0.93362 0.95807 0.94150 0.92878 0.94871 0.95316 0.90174 0.92218 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.42 71.23 0.74 -0.17 16 2 C -0.03 -0.62 7.32 24.83 0.18 -0.44 16 3 C -0.23 -4.54 10.81 22.19 0.24 -4.30 16 4 C -0.20 -4.28 10.81 22.19 0.24 -4.04 16 5 C -0.02 -0.44 5.81 24.83 0.14 -0.29 16 6 C -0.06 -0.86 6.23 29.10 0.18 -0.68 16 7 C 0.51 11.82 7.82 87.66 0.69 12.50 16 8 O -0.58 -19.49 16.03 -3.05 -0.05 -19.53 16 9 N -0.71 -14.04 5.43 -463.05 -2.51 -16.55 16 10 C 0.14 3.41 5.00 86.38 0.43 3.84 16 11 C -0.09 -2.35 2.45 -9.61 -0.02 -2.37 16 12 H 0.11 2.34 8.04 -2.39 -0.02 2.32 16 13 C 0.13 4.85 6.64 86.73 0.58 5.42 16 14 N -0.63 -29.83 3.21 -691.55 -2.22 -32.05 16 15 C -0.24 -13.72 10.57 84.04 0.89 -12.83 16 16 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 17 C -0.04 -2.38 5.43 84.86 0.46 -1.92 16 18 N -0.96 -61.25 13.97 21.65 0.30 -60.95 16 19 Si 0.95 46.81 24.27 68.60 1.66 48.47 16 20 H -0.27 -12.57 6.49 99.48 0.65 -11.93 16 21 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 22 H -0.26 -12.28 6.66 99.48 0.66 -11.62 16 23 C 0.11 4.44 4.18 86.93 0.36 4.80 16 24 C -0.09 -2.64 3.10 -9.33 -0.03 -2.67 16 25 H 0.08 2.37 8.05 -2.39 -0.02 2.35 16 26 C -0.14 -2.98 9.32 71.98 0.67 -2.31 16 27 O -0.20 -5.10 10.65 -2.55 -0.03 -5.13 16 28 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 33 H 0.16 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.42 5.78 8.40 -92.71 -0.78 5.01 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.05 1.40 8.00 -2.39 -0.02 1.38 16 38 H 0.02 0.91 7.73 -2.38 -0.02 0.89 16 39 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 41 H 0.03 1.51 6.64 -2.39 -0.02 1.50 16 42 H 0.03 1.19 5.42 -2.38 -0.01 1.18 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 Total: -1.00 -81.73 365.83 3.01 -78.72 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.10 Total: 12.49 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 5.75 Total: -5.47 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -4.43 Total: -109.55 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.08 Total: -24.67 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.66 Total: 48.47 kcal Total: -81.73 3.01 -78.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101881254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.870 kcal (2) G-P(sol) polarization free energy of solvation -81.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds