Wall clock time and date at job start Fri Apr 10 2020 21:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35136 * 125.62015 * 2 1 4 4 C 1.40362 * 107.11382 * 180.24345 * 3 2 1 5 5 C 1.36540 * 106.70990 * 359.57420 * 4 3 2 6 6 C 1.46659 * 125.98809 * 180.14833 * 5 4 3 7 7 O 1.21699 * 119.99905 * 0.35341 * 6 5 4 8 8 N 1.34773 * 119.99932 * 180.34345 * 6 5 4 9 9 C 1.46501 * 119.99893 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47478 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47559 * 180.02562 * 10 9 8 12 12 H 1.09007 * 110.88517 * 54.29894 * 11 10 9 13 13 C 1.54906 * 111.00309 * 290.42064 * 11 10 9 14 14 N 1.47469 * 104.80804 * 204.94616 * 13 11 10 15 15 C 1.36940 * 125.62790 * 204.04722 * 14 13 11 16 16 H 1.07996 * 120.00022 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00051 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99884 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00197 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47485 * 89.99860 * 19 17 15 21 21 H 1.48503 * 109.47198 * 209.99867 * 19 17 15 22 22 H 1.48502 * 109.46883 * 329.99548 * 19 17 15 23 23 C 1.47022 * 108.72525 * 24.07286 * 14 13 11 24 24 C 1.54332 * 107.26783 * 358.97022 * 23 14 13 25 25 H 1.09004 * 110.71445 * 96.17215 * 24 23 14 26 26 C 1.52996 * 110.87026 * 219.37214 * 24 23 14 27 27 O 1.33930 * 125.61524 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46920 * 89.99818 * 1 2 3 29 29 H 1.08995 * 109.47080 * 210.00272 * 1 2 3 30 30 H 1.09001 * 109.46997 * 330.00404 * 1 2 3 31 31 H 1.08002 * 126.43745 * 359.97438 * 3 2 1 32 32 H 1.08007 * 126.64252 * 179.70194 * 4 3 2 33 33 H 0.96993 * 120.00655 * 0.02562 * 8 6 5 34 34 H 1.08994 * 109.47853 * 300.00635 * 9 8 6 35 35 H 1.09005 * 109.46848 * 60.00471 * 9 8 6 36 36 H 1.09002 * 109.46643 * 300.00628 * 10 9 8 37 37 H 1.08996 * 109.47151 * 59.99920 * 10 9 8 38 38 H 1.08992 * 110.36668 * 323.75336 * 13 11 10 39 39 H 1.09004 * 110.36840 * 86.07674 * 13 11 10 40 40 H 0.97002 * 120.00031 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.88273 * 239.55800 * 23 14 13 42 42 H 1.09001 * 109.88388 * 118.38717 * 23 14 13 43 43 H 1.09005 * 109.46817 * 173.61277 * 26 24 23 44 44 H 1.09004 * 109.47461 * 293.61198 * 26 24 23 45 45 H 1.08999 * 109.47269 * 53.61668 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6530 -0.0057 5 6 3.5823 -0.7117 0.0008 6 6 4.7414 -1.6103 0.0012 7 8 5.8680 -1.1501 0.0020 8 7 4.5588 -2.9456 0.0010 9 6 5.7167 -3.8431 0.0020 10 6 5.2361 -5.2957 0.0009 11 6 6.4453 -6.2331 0.0026 12 1 7.1152 -6.0017 0.8308 13 6 7.1953 -6.1742 -1.3514 14 7 7.8870 -7.4724 -1.4560 15 6 9.0065 -7.7219 -2.2041 16 1 9.4564 -6.9293 -2.7835 17 6 9.5629 -8.9935 -2.2179 18 7 9.0147 -9.9594 -1.5115 19 14 11.0903 -9.3337 -3.2379 20 1 12.3010 -9.0831 -2.4152 21 1 11.0810 -10.7493 -3.6864 22 1 11.1034 -8.4391 -4.4232 23 6 7.1755 -8.4545 -0.6247 24 6 5.9977 -7.7180 0.0477 25 1 5.0786 -7.8611 -0.5206 26 6 5.8165 -8.1853 1.4932 27 8 2.2869 -1.0888 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9613 2.1260 -0.0004 32 1 4.5114 1.2702 -0.0117 33 1 3.6609 -3.3124 0.0002 34 1 6.3196 -3.6596 -0.8872 35 1 6.3178 -3.6597 0.8927 36 1 4.6330 -5.4795 0.8901 37 1 4.6352 -5.4789 -0.8898 38 1 6.4881 -6.0543 -2.1720 39 1 7.9177 -5.3578 -1.3498 40 1 9.4038 -10.8479 -1.5208 41 1 7.8471 -8.8518 0.1362 42 1 6.7984 -9.2646 -1.2489 43 1 5.0569 -7.5738 1.9802 44 1 5.5026 -9.2291 1.5010 45 1 6.7609 -8.0858 2.0283 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102650873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:44:27 Heat of formation + Delta-G solvation = -13.040866 kcal Electronic energy + Delta-G solvation = -24508.604499 eV Core-core repulsion = 20913.919514 eV Total energy + Delta-G solvation = -3594.684985 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.00423 -39.60620 -38.13076 -35.38837 -33.67355 -33.18417 -32.37788 -31.17335 -30.62579 -28.00609 -26.54258 -25.60531 -24.17440 -22.60666 -21.92470 -21.83718 -20.48675 -19.79080 -19.21889 -18.41247 -16.82651 -16.80390 -16.02718 -15.71893 -15.54018 -14.92275 -14.40747 -14.25700 -13.92909 -13.66346 -13.63351 -13.38429 -13.31973 -13.29680 -13.02519 -12.55227 -12.34654 -12.30508 -11.91105 -11.69272 -11.38462 -11.20419 -11.05846 -10.76015 -10.74195 -10.45727 -10.34474 -10.02570 -9.86599 -9.82467 -9.62670 -9.47571 -9.26605 -8.76766 -8.55410 -6.77019 -5.66260 -2.99213 0.77651 2.00970 2.29777 3.01009 3.03586 3.43440 3.48391 3.50231 4.22914 4.54099 4.56934 4.58762 4.86720 4.92103 4.95900 5.10689 5.18306 5.28584 5.33265 5.48822 5.49144 5.53601 5.62106 5.63546 5.69574 5.76144 5.92696 5.99083 6.04569 6.09963 6.22702 6.25929 6.29043 6.38011 6.53547 6.56120 6.66449 6.69129 6.82646 7.04249 7.30476 7.62425 7.69634 7.88881 7.92495 8.31678 9.27798 9.88185 10.54723 11.45409 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.002423 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.365489 B =11554.933786 C =12242.145153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.017 3.983 3 C -0.224 4.224 4 C -0.118 4.118 5 C -0.079 4.079 6 C 0.600 3.400 7 O -0.519 6.519 8 N -0.717 5.717 9 C 0.116 3.884 10 C -0.116 4.116 11 C -0.095 4.095 12 H 0.077 0.923 13 C 0.139 3.861 14 N -0.607 5.607 15 C -0.226 4.226 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.923 5.923 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.183 3.817 24 C -0.114 4.114 25 H 0.064 0.936 26 C -0.133 4.133 27 O -0.163 6.163 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.404 0.596 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.017 0.983 39 H 0.038 0.962 40 H 0.251 0.749 41 H 0.047 0.953 42 H 0.039 0.961 43 H 0.043 0.957 44 H 0.051 0.949 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.212 17.994 6.034 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.036 4.036 3 C -0.243 4.243 4 C -0.139 4.139 5 C -0.130 4.130 6 C 0.385 3.615 7 O -0.397 6.397 8 N -0.367 5.367 9 C -0.006 4.006 10 C -0.155 4.155 11 C -0.115 4.115 12 H 0.095 0.905 13 C 0.012 3.988 14 N -0.333 5.333 15 C -0.354 4.354 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.571 5.571 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.059 3.941 24 C -0.134 4.134 25 H 0.082 0.918 26 C -0.190 4.190 27 O -0.059 6.059 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.173 0.827 32 H 0.178 0.822 33 H 0.239 0.761 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.035 0.965 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.316 17.783 5.972 26.218 hybrid contribution 0.441 -0.233 -0.565 0.754 sum -17.875 17.550 5.406 25.627 Atomic orbital electron populations 1.20419 0.84519 1.04524 1.04031 1.22834 0.94309 0.84113 1.02326 1.21602 0.92357 0.99828 1.10516 1.21968 0.98671 0.92999 1.00263 1.22125 0.81819 0.94743 1.14351 1.16550 0.85992 0.81678 0.77256 1.90908 1.22005 1.76129 1.50651 1.45994 1.11174 1.05414 1.74138 1.21602 0.87324 0.88494 1.03192 1.21752 0.98950 0.92391 1.02376 1.22329 0.95322 0.94236 0.99627 0.90466 1.21631 0.94122 0.89878 0.93120 1.44490 1.29867 1.04831 1.54152 1.19075 1.01114 0.95057 1.20147 0.90496 1.24799 0.99476 0.95971 1.00402 1.69972 1.41207 1.01622 1.44280 0.86124 0.82838 0.77183 0.79671 1.21639 1.21734 1.20730 1.21205 0.89314 0.90355 0.93247 1.22482 1.00056 0.94677 0.96155 0.91801 1.21675 1.00905 1.00363 0.96106 1.83998 1.16022 1.34998 1.70900 0.89518 0.90098 0.88935 0.82655 0.82175 0.76142 0.90511 0.90993 0.91530 0.91226 0.96511 0.94406 0.93854 0.93450 0.94247 0.93837 0.93002 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.41 36.00 0.37 0.07 16 2 C 0.02 0.13 7.31 -35.41 -0.26 -0.13 16 3 C -0.22 -1.83 10.77 -39.89 -0.43 -2.26 16 4 C -0.12 -1.24 10.62 -39.40 -0.42 -1.66 16 5 C -0.08 -0.92 7.13 -36.80 -0.26 -1.18 16 6 C 0.60 8.15 7.79 -12.86 -0.10 8.05 16 7 O -0.52 -8.77 16.87 5.19 0.09 -8.68 16 8 N -0.72 -8.40 5.55 -61.62 -0.34 -8.74 16 9 C 0.12 1.51 5.55 -4.04 -0.02 1.49 16 10 C -0.12 -1.47 4.84 -26.73 -0.13 -1.60 16 11 C -0.10 -1.59 2.48 -88.48 -0.22 -1.81 16 12 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 13 C 0.14 2.88 6.04 -2.51 -0.02 2.86 16 14 N -0.61 -15.79 3.40 -170.04 -0.58 -16.37 16 15 C -0.23 -6.43 10.28 -15.06 -0.15 -6.59 16 16 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 18 N -0.92 -27.53 10.31 55.49 0.57 -26.96 16 19 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.18 4.47 4.97 -3.06 -0.02 4.46 16 24 C -0.11 -2.07 3.01 -88.79 -0.27 -2.34 16 25 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 26 C -0.13 -2.06 9.17 37.16 0.34 -1.72 16 27 O -0.16 -1.66 10.40 5.00 0.05 -1.61 16 28 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 33 H 0.40 3.80 8.23 -40.82 -0.34 3.47 16 34 H 0.08 1.11 7.59 -51.93 -0.39 0.72 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.86 8.04 -51.93 -0.42 0.45 16 38 H 0.02 0.35 7.96 -51.93 -0.41 -0.06 16 39 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.05 1.28 7.02 -51.93 -0.36 0.91 16 42 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -33.72 371.09 -8.65 -42.38 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.34 Total: -0.37 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.67 Total: -2.78 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.35 Total: -52.07 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.14 Total: -10.29 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.72 -8.65 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102650873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.336 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds