Wall clock time and date at job start Fri Apr 10 2020 21:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35136 * 125.62015 * 2 1 4 4 C 1.40362 * 107.11382 * 180.24345 * 3 2 1 5 5 C 1.36540 * 106.70990 * 359.57420 * 4 3 2 6 6 C 1.46659 * 125.98809 * 180.14833 * 5 4 3 7 7 O 1.21699 * 119.99905 * 0.35341 * 6 5 4 8 8 N 1.34773 * 119.99932 * 180.34345 * 6 5 4 9 9 C 1.46501 * 119.99893 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47478 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47559 * 180.02562 * 10 9 8 12 12 H 1.09007 * 110.88517 * 54.29894 * 11 10 9 13 13 C 1.54906 * 111.00309 * 290.42064 * 11 10 9 14 14 N 1.47469 * 104.80804 * 204.94616 * 13 11 10 15 15 C 1.36940 * 125.62790 * 204.04722 * 14 13 11 16 16 H 1.07996 * 120.00022 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00051 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99884 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00197 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47485 * 89.99860 * 19 17 15 21 21 H 1.48503 * 109.47198 * 209.99867 * 19 17 15 22 22 H 1.48502 * 109.46883 * 329.99548 * 19 17 15 23 23 C 1.47022 * 108.72525 * 24.07286 * 14 13 11 24 24 C 1.54332 * 107.26783 * 358.97022 * 23 14 13 25 25 H 1.09004 * 110.71445 * 96.17215 * 24 23 14 26 26 C 1.52996 * 110.87026 * 219.37214 * 24 23 14 27 27 O 1.33930 * 125.61524 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46920 * 89.99818 * 1 2 3 29 29 H 1.08995 * 109.47080 * 210.00272 * 1 2 3 30 30 H 1.09001 * 109.46997 * 330.00404 * 1 2 3 31 31 H 1.08002 * 126.43745 * 359.97438 * 3 2 1 32 32 H 1.08007 * 126.64252 * 179.70194 * 4 3 2 33 33 H 0.96993 * 120.00655 * 0.02562 * 8 6 5 34 34 H 1.08994 * 109.47853 * 300.00635 * 9 8 6 35 35 H 1.09005 * 109.46848 * 60.00471 * 9 8 6 36 36 H 1.09002 * 109.46643 * 300.00628 * 10 9 8 37 37 H 1.08996 * 109.47151 * 59.99920 * 10 9 8 38 38 H 1.08992 * 110.36668 * 323.75336 * 13 11 10 39 39 H 1.09004 * 110.36840 * 86.07674 * 13 11 10 40 40 H 0.97002 * 120.00031 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.88273 * 239.55800 * 23 14 13 42 42 H 1.09001 * 109.88388 * 118.38717 * 23 14 13 43 43 H 1.09005 * 109.46817 * 173.61277 * 26 24 23 44 44 H 1.09004 * 109.47461 * 293.61198 * 26 24 23 45 45 H 1.08999 * 109.47269 * 53.61668 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6530 -0.0057 5 6 3.5823 -0.7117 0.0008 6 6 4.7414 -1.6103 0.0012 7 8 5.8680 -1.1501 0.0020 8 7 4.5588 -2.9456 0.0010 9 6 5.7167 -3.8431 0.0020 10 6 5.2361 -5.2957 0.0009 11 6 6.4453 -6.2331 0.0026 12 1 7.1152 -6.0017 0.8308 13 6 7.1953 -6.1742 -1.3514 14 7 7.8870 -7.4724 -1.4560 15 6 9.0065 -7.7219 -2.2041 16 1 9.4564 -6.9293 -2.7835 17 6 9.5629 -8.9935 -2.2179 18 7 9.0147 -9.9594 -1.5115 19 14 11.0903 -9.3337 -3.2379 20 1 12.3010 -9.0831 -2.4152 21 1 11.0810 -10.7493 -3.6864 22 1 11.1034 -8.4391 -4.4232 23 6 7.1755 -8.4545 -0.6247 24 6 5.9977 -7.7180 0.0477 25 1 5.0786 -7.8611 -0.5206 26 6 5.8165 -8.1853 1.4932 27 8 2.2869 -1.0888 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9613 2.1260 -0.0004 32 1 4.5114 1.2702 -0.0117 33 1 3.6609 -3.3124 0.0002 34 1 6.3196 -3.6596 -0.8872 35 1 6.3178 -3.6597 0.8927 36 1 4.6330 -5.4795 0.8901 37 1 4.6352 -5.4789 -0.8898 38 1 6.4881 -6.0543 -2.1720 39 1 7.9177 -5.3578 -1.3498 40 1 9.4038 -10.8479 -1.5208 41 1 7.8471 -8.8518 0.1362 42 1 6.7984 -9.2646 -1.2489 43 1 5.0569 -7.5738 1.9802 44 1 5.5026 -9.2291 1.5010 45 1 6.7609 -8.0858 2.0283 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102650873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:44:25 Heat of formation + Delta-G solvation = -34.928654 kcal Electronic energy + Delta-G solvation = -24509.553625 eV Core-core repulsion = 20913.919514 eV Total energy + Delta-G solvation = -3595.634111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.71418 -40.67438 -39.70192 -36.60849 -35.06802 -34.26001 -33.09274 -32.52586 -32.34776 -29.04405 -27.93914 -27.22171 -25.62406 -23.83910 -22.99807 -22.62475 -21.53870 -21.21400 -20.69573 -19.33891 -18.85623 -17.57452 -17.16619 -16.94077 -16.46438 -16.37994 -15.95194 -15.63294 -15.23549 -15.06957 -14.48847 -14.19180 -14.12893 -14.03224 -13.97179 -13.87394 -13.66954 -13.43893 -13.34248 -12.93680 -12.80060 -12.76493 -12.72892 -12.40651 -12.24595 -11.93002 -11.81151 -11.59170 -11.39478 -11.22702 -11.06251 -11.05959 -10.70527 -10.30143 -9.47075 -8.88444 -7.85219 -5.20477 -0.02904 1.33535 1.43381 1.45670 1.54249 1.54785 2.06271 2.14078 2.48646 3.32028 3.58844 3.63466 3.75748 3.89696 3.93925 3.94804 4.03180 4.25828 4.33366 4.50962 4.54255 4.59410 4.62147 4.71907 4.74025 4.74664 4.75180 4.82165 4.93667 5.01151 5.01447 5.10535 5.14773 5.16907 5.25158 5.30785 5.40517 5.45618 5.46940 5.54376 5.75496 5.83418 5.84227 6.21166 6.39910 6.96673 7.11213 7.79167 8.43546 9.24774 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.002423 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.365489 B =11554.933786 C =12242.145153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.026 3.974 3 C -0.232 4.232 4 C -0.122 4.122 5 C -0.110 4.110 6 C 0.598 3.402 7 O -0.564 6.564 8 N -0.704 5.704 9 C 0.122 3.878 10 C -0.100 4.100 11 C -0.079 4.079 12 H 0.073 0.927 13 C 0.132 3.868 14 N -0.632 5.632 15 C -0.243 4.243 16 H 0.078 0.922 17 C -0.069 4.069 18 N -0.950 5.950 19 Si 0.978 3.022 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.270 1.270 23 C 0.190 3.810 24 C -0.102 4.102 25 H 0.080 0.920 26 C -0.127 4.127 27 O -0.169 6.169 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.184 0.816 32 H 0.159 0.841 33 H 0.417 0.583 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.024 0.976 39 H 0.033 0.967 40 H 0.246 0.754 41 H 0.011 0.989 42 H -0.001 1.001 43 H 0.082 0.918 44 H 0.052 0.948 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.008 19.672 6.544 30.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.027 4.027 3 C -0.250 4.250 4 C -0.143 4.143 5 C -0.161 4.161 6 C 0.385 3.615 7 O -0.445 6.445 8 N -0.355 5.355 9 C -0.001 4.001 10 C -0.138 4.138 11 C -0.099 4.099 12 H 0.092 0.908 13 C 0.007 3.993 14 N -0.358 5.358 15 C -0.372 4.372 16 H 0.096 0.904 17 C -0.262 4.262 18 N -0.600 5.600 19 Si 0.806 3.194 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.195 1.195 23 C 0.065 3.935 24 C -0.121 4.121 25 H 0.098 0.902 26 C -0.184 4.184 27 O -0.065 6.065 28 H 0.119 0.881 29 H 0.107 0.893 30 H 0.134 0.866 31 H 0.201 0.799 32 H 0.177 0.823 33 H 0.255 0.745 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.041 0.959 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.029 0.971 42 H 0.017 0.983 43 H 0.101 0.899 44 H 0.071 0.929 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -21.160 19.476 6.483 29.480 hybrid contribution 1.225 -0.674 -0.755 1.589 sum -19.935 18.802 5.728 27.995 Atomic orbital electron populations 1.20676 0.81352 1.06065 1.05375 1.23733 0.95926 0.83423 0.99611 1.21945 0.91124 1.01405 1.10553 1.22238 1.00009 0.92826 0.99216 1.21760 0.82135 0.94716 1.17530 1.16787 0.86065 0.82178 0.76435 1.90873 1.23828 1.76931 1.52912 1.45817 1.11492 1.04798 1.73356 1.21420 0.87610 0.89009 1.02095 1.21600 0.97111 0.90630 1.04435 1.22192 0.96472 0.94388 0.96847 0.90813 1.21852 0.94199 0.87480 0.95781 1.44853 1.29792 1.07188 1.53985 1.19459 1.02131 0.95288 1.20357 0.90391 1.25664 1.02649 0.95896 1.01947 1.70203 1.42492 1.01622 1.45648 0.85081 0.79086 0.76808 0.78389 1.21262 1.21865 1.19509 1.21010 0.90657 0.90136 0.91727 1.22365 0.97702 0.94484 0.97526 0.90209 1.21633 1.01522 1.01209 0.94054 1.83984 1.15432 1.35961 1.71162 0.88068 0.89326 0.86627 0.79899 0.82296 0.74543 0.92495 0.91493 0.88387 0.90176 0.95853 0.94818 0.94450 0.97108 0.98255 0.89883 0.92922 0.94041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.41 71.23 0.74 0.43 16 2 C 0.03 0.34 7.31 24.97 0.18 0.52 16 3 C -0.23 -3.24 10.77 22.07 0.24 -3.00 16 4 C -0.12 -2.47 10.62 22.39 0.24 -2.23 16 5 C -0.11 -2.51 7.13 24.07 0.17 -2.34 16 6 C 0.60 16.18 7.79 86.44 0.67 16.85 16 7 O -0.56 -19.58 16.87 -4.35 -0.07 -19.65 16 8 N -0.70 -15.56 5.55 -467.10 -2.59 -18.16 16 9 C 0.12 3.01 5.55 86.38 0.48 3.49 16 10 C -0.10 -2.23 4.84 30.59 0.15 -2.09 16 11 C -0.08 -2.54 2.48 -9.41 -0.02 -2.57 16 12 H 0.07 2.45 8.05 -2.38 -0.02 2.43 16 13 C 0.13 5.49 6.04 86.85 0.52 6.02 16 14 N -0.63 -33.83 3.40 -691.88 -2.35 -36.18 16 15 C -0.24 -14.27 10.28 84.03 0.86 -13.41 16 16 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 17 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 18 N -0.95 -58.95 10.31 21.65 0.22 -58.73 16 19 Si 0.98 47.45 29.55 68.60 2.03 49.48 16 20 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 21 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 C 0.19 9.57 4.97 86.73 0.43 10.00 16 24 C -0.10 -3.57 3.01 -9.61 -0.03 -3.60 16 25 H 0.08 2.58 8.04 -2.39 -0.02 2.56 16 26 C -0.13 -3.67 9.17 71.98 0.66 -3.01 16 27 O -0.17 -3.13 10.40 -5.03 -0.05 -3.18 16 28 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 33 H 0.42 6.88 8.23 -92.71 -0.76 6.12 16 34 H 0.06 1.65 7.59 -2.39 -0.02 1.63 16 35 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 38 H 0.02 0.96 7.96 -2.39 -0.02 0.94 16 39 H 0.03 1.41 8.10 -2.39 -0.02 1.39 16 40 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.01 0.61 7.02 -2.39 -0.02 0.59 16 42 H 0.00 -0.05 7.50 -2.39 -0.02 -0.06 16 43 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 45 H 0.04 1.30 8.07 -2.39 -0.02 1.28 16 Total: -1.00 -77.71 371.09 3.16 -74.55 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.21 Total: 10.41 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 5.76 Total: 1.47 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -4.72 Total: -113.06 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.13 Total: -22.83 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -77.71 3.16 -74.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102650873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.618 kcal (2) G-P(sol) polarization free energy of solvation -77.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds