Wall clock time and date at job start Fri Apr 10 2020 21:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40360 * 126.64375 * 2 1 4 4 C 1.35136 * 107.11241 * 180.22538 * 3 2 1 5 5 O 1.33933 * 108.76539 * 359.77593 * 4 3 2 6 6 C 1.34907 * 109.38635 * 0.02562 * 5 4 3 7 7 C 1.46658 * 125.99115 * 179.97438 * 6 5 4 8 8 O 1.21693 * 120.00209 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99653 * 0.02807 * 7 6 5 10 10 C 1.46497 * 120.00116 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47458 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47434 * 179.97438 * 11 10 9 13 13 H 1.09002 * 110.64202 * 54.29633 * 12 11 10 14 14 C 1.54322 * 110.71941 * 291.15521 * 12 11 10 15 15 N 1.47018 * 107.27336 * 219.26699 * 14 12 11 16 16 C 1.36937 * 125.64797 * 178.97600 * 15 14 12 17 17 H 1.08000 * 120.00262 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99548 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00732 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99599 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47056 * 60.00557 * 20 18 16 22 22 H 1.48508 * 109.47207 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47333 * 300.00490 * 20 18 16 24 24 C 1.47426 * 108.70104 * 358.94171 * 15 14 12 25 25 C 1.54909 * 104.83381 * 24.12870 * 24 15 14 26 26 H 1.08997 * 111.00194 * 81.06198 * 25 24 15 27 27 C 1.53003 * 111.00221 * 204.91626 * 25 24 15 28 28 H 1.09001 * 109.47178 * 270.15793 * 1 2 3 29 29 H 1.09004 * 109.47039 * 30.15460 * 1 2 3 30 30 H 1.09001 * 109.47337 * 150.15836 * 1 2 3 31 31 H 1.07997 * 126.44870 * 359.97438 * 3 2 1 32 32 H 1.07992 * 125.61655 * 179.78105 * 4 3 2 33 33 H 0.96998 * 120.00168 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47060 * 59.99669 * 10 9 7 35 35 H 1.09005 * 109.47202 * 299.99759 * 10 9 7 36 36 H 1.08999 * 109.47244 * 59.99796 * 11 10 9 37 37 H 1.09006 * 109.47179 * 299.99779 * 11 10 9 38 38 H 1.08998 * 109.88021 * 338.68403 * 14 12 11 39 39 H 1.09005 * 109.88017 * 99.69091 * 14 12 11 40 40 H 0.96996 * 120.00556 * 179.97438 * 19 18 16 41 41 H 1.08998 * 110.36876 * 142.97187 * 24 15 14 42 42 H 1.09003 * 110.36123 * 265.28869 * 24 15 14 43 43 H 1.08998 * 109.46949 * 172.19393 * 27 25 24 44 44 H 1.08994 * 109.47021 * 292.19568 * 27 25 24 45 45 H 1.09005 * 109.47193 * 52.20022 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6183 0.6744 -0.0051 5 8 3.6004 -0.6648 -0.0032 6 6 2.3220 -1.0956 0.0025 7 6 1.8841 -2.4953 0.0056 8 8 0.6967 -2.7614 0.0103 9 7 2.7970 -3.4868 0.0033 10 6 2.3597 -4.8850 0.0058 11 6 3.5842 -5.8024 0.0018 12 6 3.1275 -7.2626 0.0051 13 1 2.4413 -7.4525 -0.8203 14 6 2.4729 -7.6269 1.3542 15 7 2.9074 -8.9890 1.6967 16 6 2.5625 -9.6755 2.8302 17 1 1.9170 -9.2163 3.5643 18 6 3.0418 -10.9620 3.0353 19 7 3.8281 -11.5219 2.1406 20 14 2.5719 -11.8982 4.5820 21 1 1.0958 -12.0520 4.6383 22 1 3.2093 -13.2393 4.5618 23 1 3.0372 -11.1474 5.7757 24 6 3.7754 -9.4937 0.6171 25 6 4.3447 -8.2226 -0.0610 26 1 5.1880 -7.8235 0.5026 27 6 4.7418 -8.5058 -1.5112 28 1 -0.3633 0.0028 1.0277 29 1 -0.3633 0.8886 -0.5163 30 1 -0.3634 -0.8914 -0.5114 31 1 2.0306 2.1595 -0.0004 32 1 4.5045 1.2915 -0.0098 33 1 3.7435 -3.2747 -0.0008 34 1 1.7579 -5.0791 -0.8819 35 1 1.7639 -5.0778 0.8980 36 1 4.1864 -5.6084 0.8893 37 1 4.1797 -5.6096 -0.8907 38 1 2.7993 -6.9288 2.1251 39 1 1.3874 -7.5942 1.2603 40 1 4.1632 -12.4207 2.2841 41 1 4.5833 -10.0972 1.0307 42 1 3.1929 -10.0761 -0.0968 43 1 5.0070 -7.5707 -2.0045 44 1 5.5971 -9.1811 -1.5284 45 1 3.9038 -8.9673 -2.0339 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102663066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:44:39 Heat of formation + Delta-G solvation = -11.715498 kcal Electronic energy + Delta-G solvation = -24717.585829 eV Core-core repulsion = 21122.958317 eV Total energy + Delta-G solvation = -3594.627513 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -42.98715 -39.59377 -38.13221 -35.49019 -34.28140 -33.24012 -31.46356 -30.70538 -30.43406 -28.06601 -26.68792 -25.62275 -24.28715 -22.97370 -22.04866 -21.40575 -20.25177 -19.62487 -19.22335 -18.26804 -16.83078 -16.69621 -16.29201 -15.92474 -15.54459 -14.93403 -14.48490 -14.28972 -13.87421 -13.60687 -13.52146 -13.30501 -13.28039 -12.96993 -12.80931 -12.79382 -12.08609 -12.04075 -12.00762 -11.64705 -11.47415 -11.11008 -11.00512 -10.83764 -10.71417 -10.33152 -10.09444 -10.01531 -9.88124 -9.79861 -9.68585 -9.30792 -9.27734 -8.82457 -8.60902 -6.78050 -5.61074 -3.02472 0.80331 2.03505 2.43346 3.00179 3.08579 3.43111 3.47053 3.48465 4.38060 4.47399 4.52524 4.64727 4.92056 5.11046 5.16984 5.22745 5.29740 5.44754 5.48968 5.49792 5.55525 5.58236 5.68108 5.73929 5.78326 5.85941 5.94510 5.98507 6.10237 6.16879 6.25108 6.28376 6.32491 6.36415 6.55819 6.58614 6.64846 6.72597 6.86188 7.05131 7.32875 7.58773 7.67700 7.90806 7.94973 8.41067 9.26860 9.87875 10.53428 11.42571 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.021930 B = 0.002560 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.493810 B =10935.700063 C =11599.279020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.089 4.089 3 C -0.226 4.226 4 C -0.006 4.006 5 O -0.164 6.164 6 C -0.084 4.084 7 C 0.600 3.400 8 O -0.518 6.518 9 N -0.717 5.717 10 C 0.117 3.883 11 C -0.117 4.117 12 C -0.092 4.092 13 H 0.073 0.927 14 C 0.139 3.861 15 N -0.606 5.606 16 C -0.221 4.221 17 H 0.076 0.924 18 C -0.012 4.012 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.158 3.842 25 C -0.115 4.115 26 H 0.068 0.932 27 C -0.133 4.133 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.155 0.845 32 H 0.210 0.790 33 H 0.404 0.596 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.022 0.978 39 H 0.020 0.980 40 H 0.252 0.748 41 H 0.105 0.895 42 H 0.011 0.989 43 H 0.042 0.958 44 H 0.052 0.948 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.539 23.803 -7.913 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.245 4.245 4 C -0.076 4.076 5 O -0.059 6.059 6 C -0.136 4.136 7 C 0.386 3.614 8 O -0.396 6.396 9 N -0.368 5.368 10 C -0.006 4.006 11 C -0.155 4.155 12 C -0.112 4.112 13 H 0.091 0.909 14 C 0.013 3.987 15 N -0.331 5.331 16 C -0.349 4.349 17 H 0.094 0.906 18 C -0.208 4.208 19 N -0.572 5.572 20 Si 0.744 3.256 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.034 3.966 25 C -0.134 4.134 26 H 0.086 0.914 27 C -0.191 4.191 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.173 0.827 32 H 0.226 0.774 33 H 0.239 0.761 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.122 0.878 42 H 0.029 0.971 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.951 23.135 -7.798 24.433 hybrid contribution 0.197 -0.061 0.796 0.822 sum 1.149 23.075 -7.002 24.141 Atomic orbital electron populations 1.20438 0.88157 1.03619 1.03007 1.20671 0.97757 0.91003 0.99761 1.21756 0.92473 1.00171 1.10078 1.24359 0.99969 0.80625 1.02611 1.84059 1.28392 1.22713 1.70767 1.21952 0.81453 0.94951 1.15223 1.16528 0.85858 0.81793 0.77249 1.90865 1.15690 1.82305 1.50704 1.45995 1.09837 1.06729 1.74205 1.21595 0.97864 0.78042 1.03064 1.21790 0.96506 0.94726 1.02453 1.22140 0.98144 0.92182 0.98721 0.90859 1.21371 0.96059 0.88348 0.92905 1.44494 1.56154 1.11600 1.20871 1.19047 1.24314 0.95955 0.95630 0.90611 1.24778 1.00247 0.97112 0.98630 1.69789 1.37824 1.14972 1.34633 0.86163 0.77871 0.79044 0.82490 1.21233 1.21596 1.21209 1.21975 0.95224 0.91058 0.88373 1.22632 0.96368 0.98689 0.95746 0.91382 1.21635 1.01114 1.00167 0.96177 0.90720 0.91518 0.89391 0.82692 0.77351 0.76139 0.91104 0.90557 0.91118 0.91516 0.96006 0.96253 0.93751 0.87780 0.97055 0.93844 0.92897 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.81 36.01 0.35 -0.57 16 2 C -0.09 -0.95 6.20 -104.44 -0.65 -1.59 16 3 C -0.23 -1.78 10.83 -39.89 -0.43 -2.22 16 4 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 5 O -0.16 -1.61 10.40 5.01 0.05 -1.56 16 6 C -0.08 -0.98 7.13 -36.80 -0.26 -1.25 16 7 C 0.60 8.05 7.79 -12.86 -0.10 7.95 16 8 O -0.52 -8.36 14.74 5.20 0.08 -8.28 16 9 N -0.72 -8.44 5.55 -61.63 -0.34 -8.78 16 10 C 0.12 1.52 5.54 -4.05 -0.02 1.49 16 11 C -0.12 -1.51 4.73 -26.73 -0.13 -1.64 16 12 C -0.09 -1.55 2.42 -88.79 -0.21 -1.77 16 13 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 14 C 0.14 2.92 6.10 -3.07 -0.02 2.91 16 15 N -0.61 -15.76 3.39 -170.07 -0.58 -16.34 16 16 C -0.22 -6.28 10.27 -15.06 -0.15 -6.44 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 19 N -0.92 -27.20 10.09 55.49 0.56 -26.64 16 20 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 C 0.16 3.85 5.36 -2.53 -0.01 3.84 16 25 C -0.11 -2.11 3.09 -88.47 -0.27 -2.38 16 26 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 27 C -0.13 -2.04 9.31 37.16 0.35 -1.69 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.01 6.45 -51.93 -0.33 0.67 16 31 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.21 0.55 8.06 -52.49 -0.42 0.12 16 33 H 0.40 3.88 8.23 -40.82 -0.34 3.54 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.12 7.58 -51.93 -0.39 0.72 16 36 H 0.07 0.93 8.00 -51.93 -0.42 0.52 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.02 0.46 7.73 -51.93 -0.40 0.06 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.10 2.86 5.87 -51.93 -0.31 2.55 16 42 H 0.01 0.30 7.98 -51.93 -0.41 -0.12 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -32.97 366.45 -8.24 -41.21 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.21 Total: 0.98 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.30 Total: -3.48 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.36 Total: -51.76 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.13 Total: -9.84 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.97 -8.24 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102663066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.498 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds