Wall clock time and date at job start Fri Apr 10 2020 21:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35128 * 126.44058 * 2 1 4 4 O 1.33938 * 108.76523 * 179.75387 * 3 2 1 5 5 C 1.34912 * 109.38442 * 0.39867 * 4 3 2 6 6 C 1.46658 * 125.99119 * 179.86242 * 5 4 3 7 7 O 1.21693 * 120.00209 * 179.69514 * 6 5 4 8 8 N 1.34777 * 119.99653 * 359.69503 * 6 5 4 9 9 C 1.46497 * 120.00116 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47458 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47434 * 179.97438 * 10 9 8 12 12 H 1.09002 * 110.64202 * 54.29633 * 11 10 9 13 13 C 1.54322 * 110.71941 * 291.15521 * 11 10 9 14 14 N 1.47018 * 107.27336 * 219.26699 * 13 11 10 15 15 C 1.36937 * 125.64797 * 178.97600 * 14 13 11 16 16 H 1.08000 * 120.00262 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99548 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00732 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99599 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47056 * 60.00557 * 19 17 15 21 21 H 1.48508 * 109.47207 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47333 * 300.00490 * 19 17 15 23 23 C 1.47426 * 108.70104 * 358.94171 * 14 13 11 24 24 C 1.54909 * 104.83381 * 24.12870 * 23 14 13 25 25 H 1.08997 * 111.00194 * 81.06198 * 24 23 14 26 26 C 1.53003 * 111.00221 * 204.91626 * 24 23 14 27 27 C 1.36552 * 108.02319 * 359.60397 * 5 4 3 28 28 H 1.09003 * 109.47353 * 270.00097 * 1 2 3 29 29 H 1.09002 * 109.47424 * 30.00277 * 1 2 3 30 30 H 1.09003 * 109.47243 * 150.00115 * 1 2 3 31 31 H 1.07992 * 125.61829 * 0.03222 * 3 2 1 32 32 H 0.96998 * 120.00168 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.47060 * 59.99669 * 9 8 6 34 34 H 1.09005 * 109.47202 * 299.99759 * 9 8 6 35 35 H 1.08999 * 109.47244 * 59.99796 * 10 9 8 36 36 H 1.09006 * 109.47179 * 299.99779 * 10 9 8 37 37 H 1.08998 * 109.88021 * 338.68403 * 13 11 10 38 38 H 1.09005 * 109.88017 * 99.69091 * 13 11 10 39 39 H 0.96996 * 120.00556 * 179.97438 * 18 17 15 40 40 H 1.08998 * 110.36876 * 142.97187 * 23 14 13 41 41 H 1.09003 * 110.36123 * 265.28869 * 23 14 13 42 42 H 1.08998 * 109.46949 * 172.19393 * 26 24 23 43 43 H 1.08994 * 109.47021 * 292.19568 * 26 24 23 44 44 H 1.09005 * 109.47193 * 52.20022 * 26 24 23 45 45 H 1.07997 * 126.64378 * 180.26116 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5858 0.6804 0.0054 5 6 3.6260 -0.6681 0.0002 6 6 4.8378 -1.4942 0.0007 7 8 4.7470 -2.7077 0.0012 8 7 6.0521 -0.9092 0.0007 9 6 7.2626 -1.7343 0.0006 10 6 8.4964 -0.8296 0.0000 11 6 9.7607 -1.6913 0.0006 12 1 9.7430 -2.4002 -0.8272 13 6 9.9185 -2.4283 1.3472 14 7 11.3481 -2.4099 1.6901 15 6 11.9043 -2.9434 2.8219 16 1 11.2770 -3.4300 3.5542 17 6 13.2745 -2.8598 3.0276 18 7 14.0391 -2.2673 2.1351 19 14 14.0332 -3.5871 4.5720 20 1 13.7510 -5.0442 4.6232 21 1 15.5018 -3.3672 4.5528 22 1 13.4499 -2.9276 5.7678 23 6 12.0836 -1.7225 0.6131 24 6 11.0332 -0.8058 -0.0621 25 1 10.8966 0.1152 0.5046 26 6 11.4200 -0.5032 -1.5112 27 6 2.3407 -1.1292 0.0001 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9770 2.1145 0.0005 32 1 6.1244 0.0581 -0.0001 33 1 7.2734 -2.3635 -0.8893 34 1 7.2735 -2.3635 0.8907 35 1 8.4859 -0.2000 0.8897 36 1 8.4854 -0.2007 -0.8903 37 1 9.3454 -1.9155 2.1197 38 1 9.5715 -3.4570 1.2497 39 1 14.9966 -2.2086 2.2790 40 1 12.8960 -1.1266 1.0289 41 1 12.4716 -2.4468 -0.1033 42 1 10.6027 0.0242 -2.0029 43 1 12.3149 0.1188 -1.5261 44 1 11.6179 -1.4373 -2.0371 45 1 2.0266 -2.1625 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103350588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:44:59 Heat of formation + Delta-G solvation = -12.773817 kcal Electronic energy + Delta-G solvation = -24461.008554 eV Core-core repulsion = 20866.335149 eV Total energy + Delta-G solvation = -3594.673405 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.00989 -39.61268 -38.13177 -35.42160 -34.52409 -33.24918 -31.48607 -30.72937 -30.50383 -27.83724 -26.81435 -25.66525 -24.45069 -23.14073 -21.93226 -21.43651 -20.24613 -19.64041 -19.17960 -18.16226 -16.83528 -16.70607 -16.56640 -15.95359 -15.56783 -14.95198 -14.36037 -14.25934 -13.92766 -13.74085 -13.59686 -13.48738 -13.33460 -12.98743 -12.95424 -12.79834 -12.13457 -12.04749 -12.01487 -11.65434 -11.47850 -11.11725 -11.01037 -10.84598 -10.71566 -10.49073 -10.10005 -10.04872 -9.88575 -9.80519 -9.68765 -9.31109 -9.27910 -8.86796 -8.60972 -6.78137 -5.61111 -3.02521 0.78895 1.97250 2.40056 2.99296 3.04797 3.43095 3.47018 3.48446 4.35541 4.41265 4.52471 4.59424 4.88488 4.99322 5.10422 5.21338 5.27094 5.30234 5.42604 5.48119 5.54280 5.57166 5.58177 5.62210 5.67745 5.78038 5.93033 5.97687 6.05219 6.13450 6.23304 6.27687 6.30076 6.35458 6.52782 6.58202 6.64669 6.72424 6.85954 7.04876 7.29769 7.58685 7.67635 7.90711 7.91400 8.40989 9.26790 9.87783 10.53324 11.42497 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.023857 B = 0.002396 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.393046 B =11685.244825 C =12353.464472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.195 4.195 3 C -0.011 4.011 4 O -0.162 6.162 5 C -0.073 4.073 6 C 0.599 3.401 7 O -0.519 6.519 8 N -0.716 5.716 9 C 0.116 3.884 10 C -0.117 4.117 11 C -0.092 4.092 12 H 0.073 0.927 13 C 0.139 3.861 14 N -0.606 5.606 15 C -0.221 4.221 16 H 0.076 0.924 17 C -0.013 4.013 18 N -0.923 5.923 19 Si 0.914 3.086 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.159 3.841 24 C -0.115 4.115 25 H 0.068 0.932 26 C -0.133 4.133 27 C -0.120 4.120 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.209 0.791 32 H 0.405 0.595 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.022 0.978 38 H 0.020 0.980 39 H 0.252 0.748 40 H 0.105 0.895 41 H 0.011 0.989 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.992 9.494 -7.860 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.196 4.196 3 C -0.081 4.081 4 O -0.057 6.057 5 C -0.125 4.125 6 C 0.384 3.616 7 O -0.397 6.397 8 N -0.366 5.366 9 C -0.006 4.006 10 C -0.155 4.155 11 C -0.112 4.112 12 H 0.092 0.908 13 C 0.013 3.987 14 N -0.331 5.331 15 C -0.349 4.349 16 H 0.094 0.906 17 C -0.208 4.208 18 N -0.572 5.572 19 Si 0.745 3.255 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.034 3.966 24 C -0.134 4.134 25 H 0.086 0.914 26 C -0.191 4.191 27 C -0.141 4.141 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.226 0.774 32 H 0.239 0.761 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.062 0.938 40 H 0.122 0.878 41 H 0.029 0.971 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.527 8.743 -7.744 25.375 hybrid contribution 0.222 0.005 0.786 0.816 sum -22.305 8.748 -6.958 24.949 Atomic orbital electron populations 1.20187 0.88587 1.02880 1.02399 1.20505 0.97764 0.92426 1.08906 1.24201 0.79930 1.00052 1.03920 1.84061 1.29366 1.21719 1.70601 1.22145 0.96283 0.80514 1.13529 1.16558 0.81322 0.86396 0.77285 1.90904 1.85967 1.12237 1.50614 1.45995 1.05612 1.11005 1.74029 1.21613 0.82087 0.93820 1.03120 1.21791 0.93074 0.98125 1.02480 1.22141 0.93152 0.97155 0.98740 0.90849 1.21374 0.87840 0.96574 0.92918 1.44495 1.00688 1.66829 1.21110 1.19046 0.90837 1.29258 0.95789 0.90610 1.24783 0.96025 1.01343 0.98662 1.69789 1.04224 1.48460 1.34726 0.86159 0.78132 0.78784 0.82467 1.21236 1.21601 1.21210 1.21974 0.93320 0.92892 0.88434 1.22633 0.96304 0.98744 0.95760 0.91375 1.21636 1.00278 1.01002 0.96186 1.21863 0.90566 1.00635 1.01018 0.91205 0.91437 0.91240 0.77448 0.76068 0.91052 0.90515 0.91094 0.91491 0.95997 0.96246 0.93753 0.87774 0.97054 0.93839 0.92892 0.93001 0.82255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.39 36.00 0.37 -0.06 16 2 C -0.19 -1.56 6.14 -104.93 -0.64 -2.21 16 3 C -0.01 -0.08 12.00 29.63 0.36 0.27 16 4 O -0.16 -1.57 10.40 4.98 0.05 -1.52 16 5 C -0.07 -0.84 7.13 -36.79 -0.26 -1.10 16 6 C 0.60 8.07 7.79 -12.86 -0.10 7.97 16 7 O -0.52 -8.72 16.86 5.20 0.09 -8.63 16 8 N -0.72 -8.39 5.55 -61.63 -0.34 -8.74 16 9 C 0.12 1.51 5.54 -4.05 -0.02 1.49 16 10 C -0.12 -1.51 4.73 -26.73 -0.13 -1.63 16 11 C -0.09 -1.55 2.42 -88.79 -0.21 -1.77 16 12 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 13 C 0.14 2.92 6.10 -3.07 -0.02 2.90 16 14 N -0.61 -15.77 3.39 -170.07 -0.58 -16.35 16 15 C -0.22 -6.28 10.27 -15.06 -0.15 -6.43 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 18 N -0.92 -27.19 10.09 55.49 0.56 -26.63 16 19 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.16 3.85 5.36 -2.53 -0.01 3.84 16 24 C -0.11 -2.11 3.09 -88.47 -0.27 -2.38 16 25 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 26 C -0.13 -2.04 9.31 37.16 0.35 -1.69 16 27 C -0.12 -1.25 10.57 -39.39 -0.42 -1.67 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.21 0.64 8.06 -52.49 -0.42 0.21 16 32 H 0.40 3.82 8.23 -40.82 -0.34 3.49 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.13 7.58 -51.93 -0.39 0.73 16 35 H 0.07 0.93 8.00 -51.93 -0.42 0.52 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.02 0.46 7.73 -51.93 -0.40 0.06 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.10 2.86 5.87 -51.93 -0.31 2.55 16 41 H 0.01 0.30 7.98 -51.93 -0.41 -0.12 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 45 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -33.21 370.46 -8.22 -41.44 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.29 Total: 0.39 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.27 Total: -2.93 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.36 Total: -51.72 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.14 Total: -10.15 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.21 -8.22 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103350588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.661 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds