Wall clock time and date at job start Fri Apr 10 2020 21:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35128 * 126.44058 * 2 1 4 4 O 1.33938 * 108.76523 * 179.75387 * 3 2 1 5 5 C 1.34912 * 109.38442 * 0.39867 * 4 3 2 6 6 C 1.46658 * 125.99119 * 179.86242 * 5 4 3 7 7 O 1.21693 * 120.00209 * 179.69514 * 6 5 4 8 8 N 1.34777 * 119.99653 * 359.69503 * 6 5 4 9 9 C 1.46497 * 120.00116 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47458 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47434 * 179.97438 * 10 9 8 12 12 H 1.09002 * 110.64202 * 54.29633 * 11 10 9 13 13 C 1.54322 * 110.71941 * 291.15521 * 11 10 9 14 14 N 1.47018 * 107.27336 * 219.26699 * 13 11 10 15 15 C 1.36937 * 125.64797 * 178.97600 * 14 13 11 16 16 H 1.08000 * 120.00262 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99548 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00732 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99599 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47056 * 60.00557 * 19 17 15 21 21 H 1.48508 * 109.47207 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47333 * 300.00490 * 19 17 15 23 23 C 1.47426 * 108.70104 * 358.94171 * 14 13 11 24 24 C 1.54909 * 104.83381 * 24.12870 * 23 14 13 25 25 H 1.08997 * 111.00194 * 81.06198 * 24 23 14 26 26 C 1.53003 * 111.00221 * 204.91626 * 24 23 14 27 27 C 1.36552 * 108.02319 * 359.60397 * 5 4 3 28 28 H 1.09003 * 109.47353 * 270.00097 * 1 2 3 29 29 H 1.09002 * 109.47424 * 30.00277 * 1 2 3 30 30 H 1.09003 * 109.47243 * 150.00115 * 1 2 3 31 31 H 1.07992 * 125.61829 * 0.03222 * 3 2 1 32 32 H 0.96998 * 120.00168 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.47060 * 59.99669 * 9 8 6 34 34 H 1.09005 * 109.47202 * 299.99759 * 9 8 6 35 35 H 1.08999 * 109.47244 * 59.99796 * 10 9 8 36 36 H 1.09006 * 109.47179 * 299.99779 * 10 9 8 37 37 H 1.08998 * 109.88021 * 338.68403 * 13 11 10 38 38 H 1.09005 * 109.88017 * 99.69091 * 13 11 10 39 39 H 0.96996 * 120.00556 * 179.97438 * 18 17 15 40 40 H 1.08998 * 110.36876 * 142.97187 * 23 14 13 41 41 H 1.09003 * 110.36123 * 265.28869 * 23 14 13 42 42 H 1.08998 * 109.46949 * 172.19393 * 26 24 23 43 43 H 1.08994 * 109.47021 * 292.19568 * 26 24 23 44 44 H 1.09005 * 109.47193 * 52.20022 * 26 24 23 45 45 H 1.07997 * 126.64378 * 180.26116 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5858 0.6804 0.0054 5 6 3.6260 -0.6681 0.0002 6 6 4.8378 -1.4942 0.0007 7 8 4.7470 -2.7077 0.0012 8 7 6.0521 -0.9092 0.0007 9 6 7.2626 -1.7343 0.0006 10 6 8.4964 -0.8296 0.0000 11 6 9.7607 -1.6913 0.0006 12 1 9.7430 -2.4002 -0.8272 13 6 9.9185 -2.4283 1.3472 14 7 11.3481 -2.4099 1.6901 15 6 11.9043 -2.9434 2.8219 16 1 11.2770 -3.4300 3.5542 17 6 13.2745 -2.8598 3.0276 18 7 14.0391 -2.2673 2.1351 19 14 14.0332 -3.5871 4.5720 20 1 13.7510 -5.0442 4.6232 21 1 15.5018 -3.3672 4.5528 22 1 13.4499 -2.9276 5.7678 23 6 12.0836 -1.7225 0.6131 24 6 11.0332 -0.8058 -0.0621 25 1 10.8966 0.1152 0.5046 26 6 11.4200 -0.5032 -1.5112 27 6 2.3407 -1.1292 0.0001 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9770 2.1145 0.0005 32 1 6.1244 0.0581 -0.0001 33 1 7.2734 -2.3635 -0.8893 34 1 7.2735 -2.3635 0.8907 35 1 8.4859 -0.2000 0.8897 36 1 8.4854 -0.2007 -0.8903 37 1 9.3454 -1.9155 2.1197 38 1 9.5715 -3.4570 1.2497 39 1 14.9966 -2.2086 2.2790 40 1 12.8960 -1.1266 1.0289 41 1 12.4716 -2.4468 -0.1033 42 1 10.6027 0.0242 -2.0029 43 1 12.3149 0.1188 -1.5261 44 1 11.6179 -1.4373 -2.0371 45 1 2.0266 -2.1625 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103350588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:44:57 Heat of formation + Delta-G solvation = -34.213177 kcal Electronic energy + Delta-G solvation = -24461.938234 eV Core-core repulsion = 20866.335149 eV Total energy + Delta-G solvation = -3595.603085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -43.70142 -40.67890 -39.69943 -36.62410 -35.26052 -34.94067 -32.70074 -32.53186 -31.43222 -28.75803 -28.02688 -27.35950 -25.84440 -24.34293 -23.25012 -22.17259 -21.46184 -21.10040 -20.50754 -18.95077 -18.87048 -17.49428 -17.39573 -17.06744 -16.91839 -16.43513 -15.90791 -15.61873 -15.20517 -14.91979 -14.57209 -14.41757 -14.19780 -14.09381 -13.94735 -13.69678 -13.52035 -13.51185 -13.35769 -12.88708 -12.77403 -12.72679 -12.55458 -12.43192 -12.22105 -11.98624 -11.80394 -11.59398 -11.38744 -11.26085 -10.96639 -10.75221 -10.73480 -10.29438 -9.55056 -8.87461 -7.77164 -5.21809 -0.00575 1.33161 1.44342 1.47828 1.54248 1.62909 2.04995 2.18033 2.48915 3.30836 3.64172 3.68931 3.74329 3.81611 3.90755 4.04758 4.06678 4.24149 4.31953 4.35439 4.50899 4.62393 4.64712 4.70931 4.79014 4.83224 4.88550 4.92654 4.99738 5.01905 5.03529 5.08590 5.11025 5.17777 5.25279 5.30970 5.41195 5.45441 5.50868 5.55136 5.77007 5.82205 5.86039 6.32683 6.39429 6.96033 7.11707 7.79751 8.43735 9.23804 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.023857 B = 0.002396 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.393046 B =11685.244825 C =12353.464472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.208 4.208 3 C 0.008 3.992 4 O -0.166 6.166 5 C -0.102 4.102 6 C 0.597 3.403 7 O -0.565 6.565 8 N -0.704 5.704 9 C 0.122 3.878 10 C -0.100 4.100 11 C -0.078 4.078 12 H 0.079 0.921 13 C 0.133 3.867 14 N -0.630 5.630 15 C -0.242 4.242 16 H 0.076 0.924 17 C -0.068 4.068 18 N -0.948 5.948 19 Si 0.980 3.020 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.276 1.276 23 C 0.159 3.841 24 C -0.101 4.101 25 H 0.071 0.929 26 C -0.127 4.127 27 C -0.126 4.126 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.254 0.746 32 H 0.418 0.582 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.025 0.975 38 H 0.012 0.988 39 H 0.247 0.753 40 H 0.069 0.931 41 H -0.017 1.017 42 H 0.080 0.920 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.214 11.745 -8.485 29.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.210 4.210 3 C -0.061 4.061 4 O -0.061 6.061 5 C -0.154 4.154 6 C 0.384 3.616 7 O -0.446 6.446 8 N -0.354 5.354 9 C -0.001 4.001 10 C -0.138 4.138 11 C -0.098 4.098 12 H 0.098 0.902 13 C 0.008 3.992 14 N -0.356 5.356 15 C -0.371 4.371 16 H 0.094 0.906 17 C -0.261 4.261 18 N -0.597 5.597 19 Si 0.808 3.192 20 H -0.207 1.207 21 H -0.217 1.217 22 H -0.202 1.202 23 C 0.034 3.966 24 C -0.120 4.120 25 H 0.090 0.910 26 C -0.184 4.184 27 C -0.147 4.147 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.270 0.730 32 H 0.255 0.745 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.043 0.957 38 H 0.030 0.970 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.001 0.999 42 H 0.099 0.901 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -24.772 11.028 -8.377 28.380 hybrid contribution 0.822 -0.673 0.993 1.455 sum -23.950 10.355 -7.383 27.117 Atomic orbital electron populations 1.20261 0.86586 1.03923 1.03115 1.20855 0.99202 0.91698 1.09200 1.25142 0.78672 1.01700 1.00610 1.84050 1.30776 1.20557 1.70710 1.21730 0.95599 0.81408 1.16682 1.16808 0.82186 0.86123 0.76436 1.90869 1.86716 1.14142 1.52858 1.45824 1.04775 1.11557 1.73289 1.21422 0.82746 0.93832 1.02101 1.21636 0.90551 0.97421 1.04224 1.22042 0.94426 0.97051 0.96238 0.90232 1.21578 0.85269 0.96873 0.95520 1.44851 1.02920 1.66914 1.20889 1.19410 0.91431 1.29398 0.96851 0.90626 1.25643 0.96507 1.02139 1.01793 1.70058 1.03970 1.49415 1.36280 0.85129 0.76912 0.78105 0.79042 1.20663 1.21674 1.20223 1.21798 0.94373 0.92640 0.87742 1.22474 0.94709 0.97526 0.97317 0.91021 1.21598 1.01731 1.01275 0.93834 1.22104 0.90996 1.01406 1.00188 0.90594 0.89279 0.91391 0.73024 0.74488 0.91166 0.92705 0.90779 0.88243 0.95706 0.97041 0.94322 0.91327 0.99916 0.90075 0.92895 0.93464 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.39 71.23 0.74 0.11 16 2 C -0.21 -2.87 6.14 -20.06 -0.12 -2.99 16 3 C 0.01 0.09 12.00 67.10 0.81 0.89 16 4 O -0.17 -2.83 10.40 -5.09 -0.05 -2.88 16 5 C -0.10 -2.28 7.13 24.08 0.17 -2.11 16 6 C 0.60 16.05 7.79 86.44 0.67 16.72 16 7 O -0.56 -19.53 16.86 -4.33 -0.07 -19.60 16 8 N -0.70 -15.61 5.55 -467.11 -2.59 -18.21 16 9 C 0.12 3.04 5.54 86.38 0.48 3.52 16 10 C -0.10 -2.33 4.73 30.59 0.14 -2.19 16 11 C -0.08 -2.52 2.42 -9.61 -0.02 -2.54 16 12 H 0.08 2.50 8.04 -2.39 -0.02 2.48 16 13 C 0.13 5.64 6.10 86.73 0.53 6.17 16 14 N -0.63 -33.76 3.39 -691.99 -2.35 -36.11 16 15 C -0.24 -14.13 10.27 84.03 0.86 -13.27 16 16 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 17 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 18 N -0.95 -57.73 10.09 21.65 0.22 -57.51 16 19 Si 0.98 46.95 29.55 68.60 2.03 48.98 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 23 C 0.16 7.99 5.36 86.85 0.47 8.46 16 24 C -0.10 -3.59 3.09 -9.40 -0.03 -3.62 16 25 H 0.07 2.53 8.05 -2.39 -0.02 2.51 16 26 C -0.13 -3.58 9.31 71.98 0.67 -2.91 16 27 C -0.13 -2.55 10.57 22.39 0.24 -2.31 16 28 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.25 0.22 8.06 -2.91 -0.02 0.19 16 32 H 0.42 6.94 8.23 -92.71 -0.76 6.17 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.62 7.58 -2.38 -0.02 1.60 16 35 H 0.07 1.74 8.00 -2.39 -0.02 1.72 16 36 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.02 1.04 7.73 -2.39 -0.02 1.02 16 38 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 40 H 0.07 3.93 5.87 -2.39 -0.01 3.92 16 41 H -0.02 -0.93 7.98 -2.39 -0.02 -0.95 16 42 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 44 H 0.05 1.38 8.07 -2.38 -0.02 1.36 16 45 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -76.24 370.46 3.46 -72.78 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.22 Total: 12.16 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 6.07 Total: 0.38 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -4.72 Total: -111.82 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.13 Total: -22.48 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -76.24 3.46 -72.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103350588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.565 kcal (2) G-P(sol) polarization free energy of solvation -76.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds