Wall clock time and date at job start Fri Apr 10 2020 21:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.46758 * 2 1 4 4 O 1.33928 * 125.61424 * 270.02265 * 3 2 1 5 5 C 1.34918 * 109.38629 * 180.02562 * 4 3 2 6 6 C 1.46657 * 125.98955 * 179.97438 * 5 4 3 7 7 O 1.21694 * 119.99832 * 180.02562 * 6 5 4 8 8 N 1.34772 * 119.99759 * 0.02562 * 6 5 4 9 9 C 1.46504 * 119.99676 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.46991 * 184.66328 * 9 8 6 11 11 H 1.08997 * 110.00037 * 54.40463 * 10 9 8 12 12 C 1.54328 * 109.88253 * 293.30821 * 10 9 8 13 13 C 1.55271 * 103.00829 * 218.46742 * 12 10 9 14 14 C 1.54911 * 101.52965 * 35.36431 * 13 12 10 15 15 N 1.47023 * 109.88399 * 175.50576 * 10 9 8 16 16 C 1.36945 * 125.64364 * 298.33764 * 15 10 9 17 17 H 1.07999 * 119.99844 * 346.28822 * 16 15 10 18 18 C 1.38811 * 119.99530 * 166.29381 * 16 15 10 19 19 N 1.31613 * 120.00483 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99613 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47137 * 59.99684 * 20 18 16 22 22 H 1.48499 * 109.47355 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47319 * 299.99947 * 20 18 16 24 24 C 1.36550 * 108.02413 * 0.22577 * 5 4 3 25 25 C 1.35130 * 125.61874 * 90.02585 * 3 2 1 26 26 C 1.50705 * 126.44249 * 359.97438 * 25 3 2 27 27 H 1.09002 * 109.47063 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47540 * 300.00113 * 1 2 3 29 29 H 1.09000 * 109.47270 * 60.00174 * 1 2 3 30 30 H 1.08993 * 109.47135 * 239.99698 * 2 1 3 31 31 H 1.09003 * 109.46599 * 119.99527 * 2 1 3 32 32 H 0.96996 * 120.00164 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47103 * 64.66430 * 9 8 6 34 34 H 1.08998 * 109.47218 * 304.66198 * 9 8 6 35 35 H 1.08999 * 110.71908 * 336.76021 * 12 10 9 36 36 H 1.09000 * 110.71633 * 100.02768 * 12 10 9 37 37 H 1.09002 * 110.96391 * 277.33660 * 13 12 10 38 38 H 1.09005 * 111.09857 * 153.45022 * 13 12 10 39 39 H 1.08998 * 110.36709 * 204.23305 * 14 13 12 40 40 H 1.09001 * 110.36536 * 82.01625 * 14 13 12 41 41 H 0.97000 * 120.00236 * 180.02562 * 19 18 16 42 42 H 1.07995 * 126.64789 * 179.77444 * 24 5 4 43 43 H 1.08998 * 109.47396 * 90.00055 * 26 25 3 44 44 H 1.08997 * 109.46873 * 210.00224 * 26 25 3 45 45 H 1.09004 * 109.47060 * 329.99958 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2918 2.1563 -1.0888 5 6 2.7242 3.3774 -0.7117 6 6 3.1108 4.4701 -1.6103 7 8 3.4873 5.5319 -1.1501 8 7 3.0491 4.2983 -2.9456 9 6 3.4348 5.3901 -3.8431 10 6 3.1640 4.9791 -5.2918 11 1 2.1256 4.6671 -5.4029 12 6 4.1050 3.8240 -5.6943 13 6 4.4730 4.1686 -7.1628 14 6 4.5301 5.7159 -7.1128 15 7 3.4466 6.1062 -6.1925 16 6 2.8087 7.3179 -6.1790 17 1 1.8887 7.4377 -5.6261 18 6 3.3445 8.3921 -6.8761 19 7 4.4658 8.2462 -7.5496 20 14 2.4739 10.0447 -6.8583 21 1 2.3752 10.5372 -5.4608 22 1 3.2442 11.0188 -7.6726 23 1 1.1106 9.8922 -7.4268 24 6 2.7441 3.4158 0.6531 25 6 2.2950 2.1627 1.0985 26 6 2.1404 1.7250 2.5323 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.7493 3.4519 -3.3123 33 1 4.4962 5.6049 -3.7187 34 1 2.8533 6.2803 -3.6033 35 1 4.9962 3.8161 -5.0668 36 1 3.5857 2.8671 -5.6406 37 1 3.6978 3.8283 -7.8494 38 1 5.4428 3.7504 -7.4328 39 1 4.3551 6.1342 -8.1040 40 1 5.4939 6.0476 -6.7265 41 1 4.8404 8.9969 -8.0364 42 1 3.0447 4.2495 1.2702 43 1 3.0719 1.2766 2.8778 44 1 1.9012 2.5891 3.1521 45 1 1.3362 0.9927 2.6039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028258621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:44:58 Heat of formation + Delta-G solvation = -14.550386 kcal Electronic energy + Delta-G solvation = -25030.762741 eV Core-core repulsion = 21436.012299 eV Total energy + Delta-G solvation = -3594.750443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.85651 -39.29582 -37.60249 -35.17248 -34.31750 -33.52550 -32.48318 -30.24605 -29.57161 -28.72661 -27.32305 -25.24603 -24.48924 -23.41773 -21.83622 -21.12902 -20.27623 -19.74679 -19.31742 -17.87310 -16.69645 -16.60138 -15.89260 -15.83409 -15.03958 -14.83432 -14.64567 -14.37832 -13.92931 -13.69691 -13.49591 -13.35352 -13.17616 -13.00189 -12.83471 -12.71294 -12.39460 -12.11059 -11.88084 -11.80174 -11.72981 -11.36621 -11.34484 -10.95564 -10.77420 -10.23825 -10.20300 -10.09082 -9.87678 -9.81953 -9.80267 -9.68965 -8.84922 -8.59476 -8.44664 -6.85473 -5.76551 -3.13433 1.02249 2.15104 2.53031 3.32039 3.37087 3.42959 3.46060 3.47692 4.33068 4.48699 4.58957 4.65530 4.77382 4.83698 5.06728 5.19607 5.32442 5.35193 5.38626 5.39111 5.42239 5.48868 5.58899 5.61711 5.64616 5.73288 5.79551 5.80507 5.89044 6.02442 6.11953 6.23644 6.30823 6.45070 6.51478 6.55964 6.66356 6.74373 6.83131 7.03788 7.51663 7.59754 7.70306 7.79094 8.24614 8.30671 9.17232 9.77628 10.44451 11.35066 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.020216 B = 0.003011 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.715758 B = 9297.424276 C = 9983.613388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.045 4.045 3 C 0.013 3.987 4 O -0.159 6.159 5 C -0.067 4.067 6 C 0.594 3.406 7 O -0.522 6.522 8 N -0.710 5.710 9 C 0.107 3.893 10 C 0.152 3.848 11 H 0.039 0.961 12 C -0.128 4.128 13 C -0.148 4.148 14 C 0.171 3.829 15 N -0.588 5.588 16 C -0.235 4.235 17 H 0.076 0.924 18 C -0.001 4.001 19 N -0.916 5.916 20 Si 0.911 3.089 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C -0.123 4.123 25 C -0.190 4.190 26 C -0.081 4.081 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.400 0.600 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.025 0.975 41 H 0.254 0.746 42 H 0.158 0.842 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.894 -19.048 14.710 24.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.082 4.082 3 C -0.040 4.040 4 O -0.055 6.055 5 C -0.120 4.120 6 C 0.379 3.621 7 O -0.400 6.400 8 N -0.360 5.360 9 C -0.018 4.018 10 C 0.043 3.957 11 H 0.057 0.943 12 C -0.166 4.166 13 C -0.187 4.187 14 C 0.047 3.953 15 N -0.313 5.313 16 C -0.364 4.364 17 H 0.094 0.906 18 C -0.198 4.198 19 N -0.562 5.562 20 Si 0.741 3.259 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.211 1.211 24 C -0.143 4.143 25 C -0.191 4.191 26 C -0.138 4.138 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.234 0.766 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.044 0.956 41 H 0.065 0.935 42 H 0.176 0.824 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.604 -18.099 14.548 23.673 hybrid contribution -0.432 0.690 0.032 0.814 sum -5.036 -17.410 14.580 23.260 Atomic orbital electron populations 1.21791 0.93644 1.02475 1.02937 1.20154 0.96584 0.87144 1.04359 1.22551 1.02591 0.95000 0.83813 1.84003 1.64772 1.22091 1.34680 1.22245 1.09599 0.85413 0.94706 1.16614 0.78638 0.84937 0.81914 1.90894 1.47781 1.25193 1.76127 1.46084 1.66325 1.18303 1.05251 1.22370 1.00715 0.88911 0.89782 1.21133 0.96804 0.89612 0.88125 0.94344 1.22653 0.99141 0.96987 0.97842 1.23025 0.99894 1.00521 0.95227 1.21476 0.90745 0.87249 0.95863 1.44489 1.41702 1.11403 1.33658 1.18955 1.03323 0.85501 1.28581 0.90643 1.24900 0.96770 0.97872 1.00265 1.69924 1.20188 1.30589 1.35504 0.86216 0.78526 0.83469 0.77670 1.20905 1.21546 1.21053 1.21802 1.01079 0.98394 0.93044 1.20174 1.07867 0.94504 0.96603 1.20183 1.01884 1.01502 0.90251 0.91443 0.92100 0.91999 0.89703 0.88687 0.76558 0.91577 0.90697 0.91787 0.92331 0.92283 0.92281 0.90743 0.95645 0.93529 0.82391 0.91400 0.91303 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.53 16 2 C -0.05 -0.30 6.08 -27.88 -0.17 -0.47 16 3 C 0.01 0.13 6.57 -35.41 -0.23 -0.10 16 4 O -0.16 -2.05 10.40 4.99 0.05 -2.00 16 5 C -0.07 -0.99 7.13 -36.79 -0.26 -1.25 16 6 C 0.59 10.33 7.79 -12.86 -0.10 10.23 16 7 O -0.52 -10.91 16.86 5.19 0.09 -10.82 16 8 N -0.71 -11.61 5.40 -61.63 -0.33 -11.94 16 9 C 0.11 2.11 5.09 -4.04 -0.02 2.09 16 10 C 0.15 3.04 3.22 -66.95 -0.22 2.82 16 11 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 12 C -0.13 -2.16 6.07 -24.83 -0.15 -2.31 16 13 C -0.15 -2.72 7.10 -24.52 -0.17 -2.89 16 14 C 0.17 4.09 5.42 -2.53 -0.01 4.08 16 15 N -0.59 -14.69 3.13 -162.57 -0.51 -15.20 16 16 C -0.24 -6.49 9.73 -15.06 -0.15 -6.63 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 18 C 0.00 -0.02 5.47 -17.43 -0.10 -0.12 16 19 N -0.92 -26.72 10.54 55.49 0.58 -26.13 16 20 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.12 -1.61 10.57 -39.39 -0.42 -2.03 16 25 C -0.19 -2.03 6.14 -104.92 -0.64 -2.67 16 26 C -0.08 -0.59 9.98 36.01 0.36 -0.23 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.46 7.75 -51.93 -0.40 0.05 16 32 H 0.40 5.53 8.00 -40.82 -0.33 5.20 16 33 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 34 H 0.07 1.68 7.86 -51.93 -0.41 1.27 16 35 H 0.06 1.06 7.78 -51.93 -0.40 0.66 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.98 6.86 -51.93 -0.36 1.62 16 40 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.16 1.98 8.06 -52.49 -0.42 1.55 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.37 7.77 -51.93 -0.40 -0.03 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -32.15 371.20 -8.80 -40.95 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.33 Total: 2.35 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.92 Total: -0.02 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.26 Total: -53.27 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.14 Total: -12.82 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.15 -8.80 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028258621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.398 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds