Wall clock time and date at job start Fri Apr 10 2020 21:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28443 * 125.19728 * 2 1 4 4 C 1.30877 * 110.94319 * 180.24503 * 3 2 1 5 5 C 1.50704 * 126.05502 * 179.77640 * 4 3 2 6 6 C 1.52995 * 117.49653 * 163.72155 * 5 4 3 7 7 C 1.53000 * 117.49717 * 95.06302 * 5 4 3 8 8 C 1.39633 * 107.88073 * 359.75040 * 4 3 2 9 9 C 1.36654 * 125.19449 * 179.82032 * 2 1 3 10 10 C 1.47002 * 126.89666 * 0.03638 * 9 2 1 11 11 O 1.21549 * 120.00323 * 179.70895 * 10 9 2 12 12 O 1.34818 * 119.99702 * 359.70612 * 10 9 2 13 13 C 1.45206 * 116.99731 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47129 * 180.02562 * 13 12 10 15 15 C 1.53008 * 109.46800 * 299.99943 * 14 13 12 16 16 C 1.53001 * 109.46963 * 59.99628 * 14 13 12 17 17 C 1.52997 * 109.46965 * 180.02562 * 14 13 12 18 18 C 1.50699 * 109.46857 * 179.97438 * 17 14 13 19 19 H 1.08003 * 119.99963 * 0.02562 * 18 17 14 20 20 C 1.37884 * 120.00204 * 179.97438 * 18 17 14 21 21 N 1.31516 * 119.99565 * 0.02562 * 20 18 17 22 22 Si 1.86790 * 120.00144 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47092 * 60.00535 * 22 20 18 24 24 H 1.48506 * 109.47148 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47706 * 300.00561 * 22 20 18 26 26 H 1.08996 * 109.47243 * 270.17772 * 1 2 3 27 27 H 1.09002 * 109.47444 * 30.18255 * 1 2 3 28 28 H 1.09005 * 109.46817 * 150.17940 * 1 2 3 29 29 H 1.08998 * 115.55028 * 309.38591 * 5 4 3 30 30 H 1.09006 * 117.50196 * 359.97438 * 6 5 4 31 31 H 1.09002 * 117.50114 * 145.01678 * 6 5 4 32 32 H 1.09007 * 117.49772 * 214.97651 * 7 5 4 33 33 H 1.08998 * 117.50513 * 359.97415 * 7 5 4 34 34 H 1.08004 * 127.31985 * 179.97438 * 8 4 3 35 35 H 1.09004 * 109.47122 * 299.99985 * 13 12 10 36 36 H 1.09000 * 109.47070 * 60.00010 * 13 12 10 37 37 H 1.09002 * 109.47021 * 59.99682 * 15 14 13 38 38 H 1.09001 * 109.46630 * 179.97438 * 15 14 13 39 39 H 1.09000 * 109.47188 * 300.00076 * 15 14 13 40 40 H 1.08996 * 109.46778 * 60.00354 * 16 14 13 41 41 H 1.09001 * 109.46652 * 180.02562 * 16 14 13 42 42 H 1.08992 * 109.47514 * 300.00067 * 16 14 13 43 43 H 1.09004 * 109.46976 * 299.99579 * 17 14 13 44 44 H 1.08992 * 109.47530 * 59.99431 * 17 14 13 45 45 H 0.97002 * 119.99803 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4738 0.7274 -0.0052 5 6 4.6335 1.6898 -0.0117 6 6 6.0107 1.1390 0.3633 7 6 5.2595 2.0506 1.3370 8 6 3.5621 -0.6662 -0.0032 9 6 2.2526 -1.1167 0.0035 10 6 1.8006 -2.5155 0.0071 11 8 2.6153 -3.4176 0.0047 12 8 0.4823 -2.7978 0.0132 13 6 0.1087 -4.2010 0.0171 14 6 -1.4165 -4.3227 0.0232 15 6 -1.9774 -3.6421 1.2735 16 6 -1.9870 -3.6464 -1.2250 17 6 -1.8100 -5.8012 0.0279 18 6 -3.3123 -5.9210 0.0345 19 1 -3.9249 -5.0316 0.0348 20 6 -3.9046 -7.1661 0.0391 21 7 -3.1585 -8.2492 0.0382 22 14 -5.7665 -7.3146 0.0480 23 1 -6.3213 -6.6580 -1.1630 24 1 -6.1487 -8.7497 0.0525 25 1 -6.3101 -6.6543 1.2619 26 1 -0.3633 0.0032 1.0276 27 1 -0.3634 0.8883 -0.5167 28 1 -0.3633 -0.8916 -0.5111 29 1 4.5933 2.4692 -0.7726 30 1 6.0780 0.0806 0.6151 31 1 6.8767 1.5563 -0.1505 32 1 5.6316 3.0674 1.4632 33 1 4.8325 1.5922 2.2289 34 1 4.4608 -1.2653 -0.0066 35 1 0.5080 -4.6858 -0.8738 36 1 0.5156 -4.6829 0.9062 37 1 -1.6968 -2.5888 1.2706 38 1 -3.0639 -3.7284 1.2775 39 1 -1.5709 -4.1238 2.1627 40 1 -1.5873 -4.1313 -2.1157 41 1 -3.0735 -3.7327 -1.2204 42 1 -1.7066 -2.5932 -1.2279 43 1 -1.4104 -6.2864 -0.8626 44 1 -1.4036 -6.2826 0.9173 45 1 -3.5751 -9.1251 0.0417 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646870750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:44:34 Heat of formation + Delta-G solvation = 0.081977 kcal Electronic energy + Delta-G solvation = -25121.149970 eV Core-core repulsion = 21527.034035 eV Total energy + Delta-G solvation = -3594.115936 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.78279 -40.10948 -37.50266 -37.29697 -35.54217 -33.21868 -32.40212 -31.25625 -27.57591 -27.33914 -26.64682 -26.52826 -24.27962 -23.26068 -22.82589 -22.47358 -20.79216 -19.85017 -18.40622 -17.84536 -16.77437 -16.72599 -16.27543 -16.12097 -15.77345 -15.16291 -14.65542 -14.60114 -14.15898 -13.77030 -13.58988 -13.23318 -13.07558 -12.88159 -12.47272 -12.32410 -12.19169 -12.11190 -11.79067 -11.39092 -11.36640 -11.03046 -10.92806 -10.91406 -10.73737 -10.69357 -10.48326 -10.42757 -10.42363 -10.29536 -9.84735 -9.34641 -9.31560 -9.03227 -9.02176 -8.41747 -6.05997 -4.07686 0.94034 2.20651 2.24004 2.64618 2.87916 3.28755 3.34311 3.35569 3.54063 4.04683 4.39157 4.49601 4.59168 4.64694 4.75872 4.96489 5.02533 5.17493 5.27747 5.29215 5.34964 5.36608 5.40686 5.44757 5.50041 5.63583 5.71027 5.83664 5.85186 5.91936 6.07599 6.21114 6.24738 6.36439 6.42258 6.51958 6.59851 6.64810 6.99664 7.01328 7.03404 7.53782 7.64961 7.66203 7.86916 7.91769 8.32656 8.96194 9.55632 11.05509 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.037452 B = 0.002627 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.450430 B =10654.971706 C =11116.834159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.259 5.259 3 N -0.262 5.262 4 C 0.047 3.953 5 C -0.072 4.072 6 C -0.167 4.167 7 C -0.167 4.167 8 C -0.147 4.147 9 C -0.021 4.021 10 C 0.535 3.465 11 O -0.493 6.493 12 O -0.351 6.351 13 C 0.079 3.921 14 C -0.058 4.058 15 C -0.126 4.126 16 C -0.126 4.126 17 C 0.035 3.965 18 C -0.512 4.512 19 H 0.061 0.939 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.036 0.964 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.820 19.521 0.333 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.049 5.049 3 N -0.096 5.096 4 C -0.108 4.108 5 C -0.092 4.092 6 C -0.205 4.205 7 C -0.205 4.205 8 C -0.176 4.176 9 C -0.147 4.147 10 C 0.377 3.623 11 O -0.379 6.379 12 O -0.267 6.267 13 C 0.006 3.994 14 C -0.058 4.058 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.002 4.002 18 C -0.550 4.550 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.183 0.817 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.091 19.857 0.330 23.251 hybrid contribution -0.555 -1.155 0.008 1.281 sum 11.536 18.702 0.338 21.977 Atomic orbital electron populations 1.22496 0.71835 1.06296 1.05262 1.45816 1.08059 1.01836 1.49170 1.73066 1.03596 1.13560 1.19418 1.20973 0.90962 0.92309 1.06550 1.20006 0.89446 0.99469 1.00250 1.23038 0.93954 1.00371 1.03112 1.23016 1.03294 1.00752 0.93450 1.21961 0.95442 0.94250 1.05920 1.20763 0.91583 0.86465 1.15844 1.19634 0.81962 0.86994 0.73746 1.90893 1.55013 1.46461 1.45558 1.86545 1.23743 1.33095 1.83337 1.23633 0.97790 0.75562 1.02374 1.20835 0.88350 1.00576 0.96033 1.21731 1.02207 0.97784 0.96616 1.21734 1.02230 0.97692 0.96668 1.19123 0.96869 0.86629 0.97580 1.21085 0.91168 0.92026 1.50703 0.92141 1.25016 0.98033 0.96015 0.95424 1.69952 1.35139 0.97709 1.50553 0.86669 0.85848 0.76970 0.78582 1.20259 1.21365 1.20266 0.89242 0.88474 0.86793 0.86276 0.88204 0.88008 0.88235 0.88632 0.81742 0.91229 0.91222 0.94453 0.91408 0.93634 0.93593 0.91370 0.94546 0.96270 0.96267 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.81 59.85 0.65 1.42 16 2 N -0.26 -3.27 3.75 -63.90 -0.24 -3.51 16 3 N -0.26 -3.37 11.90 33.63 0.40 -2.97 16 4 C 0.05 0.56 6.85 -82.48 -0.57 -0.01 16 5 C -0.07 -0.63 6.33 -91.77 -0.58 -1.21 16 6 C -0.17 -1.16 10.02 -26.70 -0.27 -1.42 16 7 C -0.17 -1.23 10.24 -26.69 -0.27 -1.50 16 8 C -0.15 -1.84 10.13 -38.97 -0.39 -2.24 16 9 C -0.02 -0.30 6.96 -82.07 -0.57 -0.87 16 10 C 0.53 8.38 7.93 34.28 0.27 8.66 16 11 O -0.49 -8.91 16.71 -19.30 -0.32 -9.23 16 12 O -0.35 -5.38 6.35 -40.82 -0.26 -5.64 16 13 C 0.08 1.37 4.33 37.16 0.16 1.54 16 14 C -0.06 -1.09 0.61 -154.50 -0.09 -1.18 16 15 C -0.13 -2.20 8.08 37.16 0.30 -1.90 16 16 C -0.13 -2.19 8.08 37.16 0.30 -1.89 16 17 C 0.04 0.84 4.04 -27.89 -0.11 0.73 16 18 C -0.51 -13.31 7.65 -34.44 -0.26 -13.58 16 19 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 20 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 21 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 22 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.11 1.16 5.71 -51.93 -0.30 0.87 16 29 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.10 0.71 7.22 -51.93 -0.37 0.33 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.17 1.81 7.48 -52.48 -0.39 1.42 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.04 0.55 7.68 -51.93 -0.40 0.15 16 38 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 42 H 0.04 0.53 7.24 -51.93 -0.38 0.15 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -30.61 370.62 -7.69 -38.30 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -7.03 Total: -1.13 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -1.54 Total: -12.02 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.90 Total: -31.72 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.58 Total: -14.87 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.61 -7.69 -38.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646870750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.380 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds