Wall clock time and date at job start Fri Apr 10 2020 21:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47119 * 2 1 4 4 H 1.08990 * 109.47369 * 304.99899 * 3 2 1 5 5 C 1.53003 * 109.47106 * 65.00358 * 3 2 1 6 6 C 1.53005 * 109.46954 * 184.99824 * 3 2 1 7 7 H 1.08999 * 109.47051 * 299.99919 * 6 3 2 8 8 C 1.52993 * 109.47131 * 60.00471 * 6 3 2 9 9 N 1.46504 * 109.46821 * 180.02562 * 6 3 2 10 10 C 1.34777 * 119.99996 * 155.00283 * 9 6 3 11 11 O 1.21597 * 119.99812 * 359.97438 * 10 9 6 12 12 N 1.34773 * 120.00465 * 180.02562 * 10 9 6 13 13 C 1.40026 * 120.00516 * 174.74411 * 12 10 9 14 14 C 1.38912 * 119.99813 * 326.14744 * 13 12 10 15 15 C 1.38011 * 119.99438 * 179.78938 * 14 13 12 16 16 C 1.38900 * 120.00356 * 0.45869 * 15 14 13 17 17 O 1.35784 * 119.99833 * 179.76424 * 16 15 14 18 18 C 1.34814 * 116.99947 * 185.94177 * 17 16 15 19 19 H 1.08004 * 119.99864 * 5.40871 * 18 17 16 20 20 C 1.38625 * 120.00132 * 185.41589 * 18 17 16 21 21 N 1.31576 * 120.00092 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99916 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46863 * 90.00645 * 22 20 18 24 24 H 1.48501 * 109.47449 * 210.00535 * 22 20 18 25 25 H 1.48507 * 109.47180 * 330.00490 * 22 20 18 26 26 C 1.38901 * 120.00113 * 359.79433 * 16 15 14 27 27 C 1.38013 * 120.00111 * 359.97048 * 26 16 15 28 28 H 1.09003 * 109.47226 * 59.99777 * 1 2 3 29 29 H 1.09005 * 109.47407 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47123 * 299.99878 * 1 2 3 31 31 H 1.09000 * 109.47123 * 240.00122 * 2 1 3 32 32 H 1.09003 * 109.47226 * 120.00223 * 2 1 3 33 33 H 1.08994 * 109.47205 * 59.99058 * 5 3 2 34 34 H 1.08997 * 109.47483 * 180.02562 * 5 3 2 35 35 H 1.09008 * 109.46659 * 300.00005 * 5 3 2 36 36 H 1.09006 * 109.47124 * 299.99502 * 8 6 3 37 37 H 1.09003 * 109.47670 * 179.97438 * 8 6 3 38 38 H 1.09003 * 109.47199 * 59.99528 * 8 6 3 39 39 H 0.96995 * 119.99958 * 334.99951 * 9 6 3 40 40 H 0.97002 * 119.99213 * 354.73897 * 12 10 9 41 41 H 1.07996 * 120.00009 * 0.02562 * 14 13 12 42 42 H 1.08003 * 119.99097 * 180.22549 * 15 14 13 43 43 H 0.96999 * 119.99721 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.00168 * 179.97438 * 26 16 15 45 45 H 1.08003 * 120.00066 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4442 -0.1257 7 1 3.9994 0.9052 0.7162 8 6 3.9696 0.7603 -1.4330 9 7 4.0532 2.8255 -0.1251 10 6 5.3119 3.0950 0.2742 11 8 6.0420 2.1918 0.6344 12 7 5.7611 4.3657 0.2753 13 6 7.0285 4.6599 0.7928 14 6 7.5253 3.9341 1.8680 15 6 8.7763 4.2213 2.3753 16 6 9.5346 5.2423 1.8168 17 8 10.7634 5.5279 2.3190 18 6 11.3951 6.6068 1.8147 19 1 10.8875 7.2495 1.1106 20 6 12.6961 6.8912 2.1997 21 7 13.3124 7.9446 1.7079 22 14 13.5737 5.7799 3.4179 23 1 14.2898 4.7070 2.6822 24 1 14.5495 6.5783 4.2025 25 1 12.5794 5.1708 4.3376 26 6 9.0357 5.9715 0.7451 27 6 7.7867 5.6812 0.2347 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0698 1.5874 2.1492 34 1 1.9981 3.1543 1.3073 35 1 0.5489 2.1251 1.3970 36 1 3.6063 -0.2674 -1.4331 37 1 5.0559 0.7619 -1.5229 38 1 3.5349 1.2994 -2.2748 39 1 3.4707 3.5460 -0.4121 40 1 5.2063 5.0764 -0.0825 41 1 6.9342 3.1426 2.3045 42 1 9.1640 3.6545 3.2089 43 1 14.2225 8.1437 1.9776 44 1 9.6251 6.7657 0.3112 45 1 7.3986 6.2486 -0.5984 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329019921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:45:30 Heat of formation + Delta-G solvation = -42.702901 kcal Electronic energy + Delta-G solvation = -24510.451069 eV Core-core repulsion = 20914.479842 eV Total energy + Delta-G solvation = -3595.971227 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.48301 -39.06264 -38.01788 -36.53436 -34.15961 -33.90577 -32.28957 -30.57237 -30.25419 -29.68541 -27.82328 -25.20195 -24.80941 -23.22295 -22.29620 -21.35770 -20.61807 -20.18278 -18.47012 -17.69109 -17.44283 -16.79959 -15.83339 -15.48284 -15.06558 -14.87347 -14.59737 -14.18727 -13.99745 -13.78148 -13.66250 -13.63368 -13.53471 -12.88976 -12.73763 -12.50015 -12.30106 -12.22961 -12.12092 -11.93782 -11.77849 -11.70856 -11.55618 -11.10425 -10.93162 -10.87693 -10.77189 -10.71810 -10.14622 -9.98586 -9.64640 -9.28630 -9.15248 -8.72814 -8.24581 -6.98182 -6.38392 -4.03842 2.10436 2.18094 2.70433 3.24641 3.28828 3.34290 3.44698 4.19796 4.27634 4.29210 4.47716 4.53572 4.58508 4.89710 4.95151 5.04668 5.10479 5.12508 5.19617 5.21988 5.34435 5.49555 5.52753 5.58725 5.60066 5.63293 5.68576 5.71981 5.78945 5.96345 5.99089 6.09343 6.11842 6.15654 6.22332 6.43962 6.69886 6.74502 6.83407 7.15402 7.22796 7.28092 7.63574 7.81699 8.04388 8.07295 8.68549 8.97403 9.60820 10.69352 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.039865 B = 0.002320 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.201452 B =12068.186937 C =12281.618461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.098 4.098 4 H 0.074 0.926 5 C -0.148 4.148 6 C 0.165 3.835 7 H 0.088 0.912 8 C -0.167 4.167 9 N -0.742 5.742 10 C 0.700 3.300 11 O -0.575 6.575 12 N -0.678 5.678 13 C 0.068 3.932 14 C -0.070 4.070 15 C -0.175 4.175 16 C 0.149 3.851 17 O -0.218 6.218 18 C -0.387 4.387 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.204 4.204 27 C -0.096 4.096 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.393 0.607 40 H 0.398 0.602 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.279 0.721 44 H 0.137 0.863 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.333 -11.140 -4.820 28.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.117 4.117 4 H 0.092 0.908 5 C -0.206 4.206 6 C 0.060 3.940 7 H 0.107 0.893 8 C -0.226 4.226 9 N -0.398 5.398 10 C 0.401 3.599 11 O -0.452 6.452 12 N -0.325 5.325 13 C -0.025 4.025 14 C -0.091 4.091 15 C -0.195 4.195 16 C 0.097 3.903 17 O -0.123 6.123 18 C -0.463 4.463 19 H 0.123 0.877 20 C -0.141 4.141 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.183 1.183 26 C -0.224 4.224 27 C -0.117 4.117 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.226 0.774 40 H 0.232 0.768 41 H 0.144 0.856 42 H 0.138 0.862 43 H 0.089 0.911 44 H 0.155 0.845 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -24.336 -11.974 -4.298 27.460 hybrid contribution -0.059 0.519 -0.111 0.534 sum -24.395 -11.455 -4.409 27.309 Atomic orbital electron populations 1.21814 0.95676 1.01643 1.01896 1.21612 0.95985 0.95541 1.02682 1.21449 0.94077 0.97239 0.98965 0.90792 1.21872 1.01143 1.00653 0.96897 1.20819 0.92769 0.81451 0.98996 0.89348 1.22279 1.02648 1.00499 0.97145 1.45188 1.12853 1.09516 1.72240 1.15955 0.82007 0.83197 0.78770 1.90942 1.55755 1.44585 1.53890 1.42373 1.17672 1.07285 1.65164 1.17075 0.86135 1.01524 0.97782 1.20621 0.95392 0.98937 0.94121 1.20119 0.94890 1.00726 1.03785 1.19144 0.86045 0.93232 0.91879 1.83600 1.25660 1.45221 1.57850 1.20741 0.97471 1.00639 1.27451 0.87710 1.24462 0.95298 0.96645 0.97689 1.69657 1.13413 1.26006 1.42863 0.86181 0.79390 0.80153 0.81195 1.19925 1.20850 1.18305 1.21082 0.96772 1.04557 0.99982 1.20497 0.93933 0.98189 0.99052 0.92811 0.92749 0.92458 0.91257 0.91612 0.92465 0.92557 0.92379 0.91475 0.91807 0.92716 0.77388 0.76831 0.85563 0.86184 0.91126 0.84525 0.86968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.67 37.16 0.36 -0.40 16 2 C -0.12 -0.68 5.19 -26.74 -0.14 -0.82 16 3 C -0.10 -0.61 2.02 -90.62 -0.18 -0.79 16 4 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 5 C -0.15 -0.96 8.79 37.16 0.33 -0.63 16 6 C 0.16 1.46 2.16 -67.93 -0.15 1.31 16 7 H 0.09 0.99 7.58 -51.93 -0.39 0.59 16 8 C -0.17 -1.46 9.14 37.15 0.34 -1.12 16 9 N -0.74 -7.05 4.39 -58.67 -0.26 -7.31 16 10 C 0.70 9.82 8.26 -86.92 -0.72 9.11 16 11 O -0.58 -10.55 13.72 5.28 0.07 -10.47 16 12 N -0.68 -9.11 5.35 -14.18 -0.08 -9.19 16 13 C 0.07 1.19 6.27 -83.62 -0.52 0.67 16 14 C -0.07 -1.36 8.65 -39.42 -0.34 -1.70 16 15 C -0.18 -3.69 9.98 -39.42 -0.39 -4.09 16 16 C 0.15 3.51 6.65 -39.09 -0.26 3.25 16 17 O -0.22 -5.84 8.58 -0.01 0.00 -5.84 16 18 C -0.39 -10.97 9.90 30.88 0.31 -10.66 16 19 H 0.11 3.00 5.53 -52.48 -0.29 2.71 16 20 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 21 N -0.88 -25.56 13.96 55.48 0.77 -24.79 16 22 Si 0.91 21.99 28.61 -169.99 -4.86 17.13 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 26 C -0.20 -4.40 9.13 -39.42 -0.36 -4.76 16 27 C -0.10 -1.72 9.96 -39.42 -0.39 -2.12 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.28 6.56 -51.93 -0.34 -0.06 16 31 H 0.07 0.38 6.17 -51.93 -0.32 0.06 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.38 7.44 -51.93 -0.39 -0.01 16 35 H 0.06 0.32 6.57 -51.92 -0.34 -0.02 16 36 H 0.07 0.48 6.32 -51.93 -0.33 0.16 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.39 2.59 8.41 -40.82 -0.34 2.25 16 40 H 0.40 3.85 8.84 -40.82 -0.36 3.49 16 41 H 0.13 2.39 6.44 -52.49 -0.34 2.05 16 42 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 43 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.14 3.05 5.71 -52.48 -0.30 2.75 16 45 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -32.35 364.18 -7.77 -40.12 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.68 Total: 5.96 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -2.22 Total: -11.09 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.44 Total: -41.28 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.07 Total: -16.31 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.86 Total: 17.13 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.35 -7.77 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329019921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.587 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds