Wall clock time and date at job start Fri Apr 10 2020 21:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47359 * 2 1 4 4 O 1.42905 * 109.46967 * 119.99604 * 2 1 3 5 5 C 1.35999 * 116.99640 * 84.80567 * 4 2 1 6 6 C 1.38695 * 119.98652 * 354.62457 * 5 4 2 7 7 C 1.38114 * 120.02258 * 180.02562 * 6 5 4 8 8 C 1.38851 * 119.98074 * 359.97438 * 7 6 5 9 9 N 1.39942 * 120.02204 * 180.02562 * 8 7 6 10 10 C 1.46503 * 119.99534 * 0.02562 * 9 8 7 11 11 C 1.46501 * 120.00314 * 179.97438 * 9 8 7 12 12 C 1.50706 * 109.46853 * 90.00081 * 11 9 8 13 13 O 1.21282 * 119.99835 * 0.02562 * 12 11 9 14 14 N 1.34773 * 119.99972 * 180.02562 * 12 11 9 15 15 C 1.46495 * 120.00177 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.47409 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99889 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99887 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00518 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99803 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46795 * 90.00006 * 20 18 16 22 22 H 1.48502 * 109.47380 * 209.99899 * 20 18 16 23 23 H 1.48495 * 109.47216 * 330.00147 * 20 18 16 24 24 C 1.38870 * 119.96133 * 0.27592 * 8 7 6 25 25 C 1.38107 * 119.97578 * 359.47202 * 24 8 7 26 26 H 1.08998 * 109.47059 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47844 * 300.00451 * 1 2 3 28 28 H 1.09003 * 109.46963 * 60.00203 * 1 2 3 29 29 H 1.09004 * 109.47694 * 239.99301 * 2 1 3 30 30 H 1.09000 * 109.47743 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46917 * 299.99825 * 3 2 1 32 32 H 1.08999 * 109.47665 * 59.99345 * 3 2 1 33 33 H 1.07999 * 119.99088 * 0.02562 * 6 5 4 34 34 H 1.07998 * 120.00677 * 179.97438 * 7 6 5 35 35 H 1.08996 * 109.46942 * 269.99456 * 10 9 8 36 36 H 1.08999 * 109.47156 * 29.99799 * 10 9 8 37 37 H 1.09001 * 109.46580 * 150.00049 * 10 9 8 38 38 H 1.08992 * 109.47282 * 209.99984 * 11 9 8 39 39 H 1.08995 * 109.47360 * 330.00703 * 11 9 8 40 40 H 0.96996 * 120.00097 * 0.02562 * 14 12 11 41 41 H 1.09004 * 109.47166 * 299.99839 * 15 14 12 42 42 H 1.09001 * 109.47138 * 59.99790 * 15 14 12 43 43 H 0.96996 * 120.00225 * 180.02562 * 19 18 16 44 44 H 1.08004 * 120.00814 * 179.69885 * 24 8 7 45 45 H 1.08003 * 119.98346 * 180.25130 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1086 -2.0280 1.0993 6 6 1.6535 -2.7024 -0.0240 7 6 1.7566 -4.0779 -0.0932 8 6 2.3165 -4.7857 0.9620 9 7 2.4218 -6.1795 0.8926 10 6 1.9418 -6.8920 -0.2940 11 6 3.0132 -6.9258 2.0060 12 6 1.9326 -7.3084 2.9843 13 8 0.7819 -6.9895 2.7721 14 7 2.2450 -8.0050 4.0950 15 6 1.1946 -8.3774 5.0457 16 6 1.8030 -9.1440 6.1918 17 1 2.8658 -9.3350 6.2098 18 6 1.0028 -9.6014 7.2171 19 7 -0.2914 -9.3683 7.1954 20 14 1.7568 -10.5522 8.6373 21 1 2.1608 -9.6054 9.7077 22 1 0.7594 -11.5117 9.1757 23 1 2.9497 -11.2952 8.1576 24 6 2.7671 -4.1103 2.0886 25 6 2.6680 -2.7343 2.1538 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.2184 -2.1517 -0.8449 34 1 1.4018 -4.6028 -0.9678 35 1 0.8943 -7.1605 -0.1576 36 1 2.0413 -6.2494 -1.1688 37 1 2.5328 -7.7965 -0.4384 38 1 3.4938 -7.8267 1.6248 39 1 3.7538 -6.3034 2.5079 40 1 3.1654 -8.2597 4.2648 41 1 0.7132 -7.4766 5.4266 42 1 0.4544 -9.0004 4.5437 43 1 -0.8542 -9.6898 7.9170 44 1 3.1983 -4.6605 2.9119 45 1 3.0222 -2.2085 3.0282 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759927386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:44:40 Heat of formation + Delta-G solvation = -65.252608 kcal Electronic energy + Delta-G solvation = -24600.131222 eV Core-core repulsion = 21003.182166 eV Total energy + Delta-G solvation = -3596.949056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.31219 -40.55637 -39.11926 -36.54964 -35.98865 -34.35437 -33.91679 -32.17278 -30.68146 -29.78865 -28.69689 -28.11357 -25.92301 -24.64173 -23.89971 -22.43372 -21.72804 -21.02346 -19.36074 -19.03740 -17.93599 -17.60035 -17.28085 -16.86436 -16.38708 -16.18616 -16.05268 -15.67250 -15.43732 -15.08001 -14.75460 -14.44827 -14.36161 -14.20526 -13.98913 -13.86108 -13.67047 -13.33724 -13.13567 -13.04290 -12.95033 -12.83185 -12.78774 -12.71651 -12.60540 -12.23178 -11.99330 -11.76299 -11.49441 -11.39738 -11.00103 -10.81131 -10.11100 -9.92815 -9.81636 -8.30238 -7.95506 -6.46847 0.41086 0.69382 1.42472 1.45083 1.56243 1.78828 2.05501 2.34921 2.41772 2.71450 2.94312 3.04960 3.82774 3.88093 3.95710 4.01519 4.05176 4.11484 4.19687 4.32537 4.34661 4.43474 4.49354 4.64000 4.70617 4.72798 4.83757 4.85317 4.90529 4.94266 5.06853 5.10182 5.17168 5.22711 5.26475 5.29025 5.34187 5.47981 5.48947 5.69233 5.73552 5.84499 6.27077 6.46138 6.65143 6.69468 6.95630 7.23199 7.53694 8.82381 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.002607 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.319735 B =10737.612191 C =11460.884668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.069 3.931 3 C -0.145 4.145 4 O -0.332 6.332 5 C 0.060 3.940 6 C -0.159 4.159 7 C -0.162 4.162 8 C 0.177 3.823 9 N -0.618 5.618 10 C 0.094 3.906 11 C 0.116 3.884 12 C 0.469 3.531 13 O -0.595 6.595 14 N -0.708 5.708 15 C 0.269 3.731 16 C -0.554 4.554 17 H 0.087 0.913 18 C 0.001 3.999 19 N -0.933 5.933 20 Si 0.986 3.014 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.253 1.253 24 C -0.169 4.169 25 C -0.119 4.119 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.024 0.976 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.140 0.860 39 H 0.123 0.877 40 H 0.410 0.590 41 H -0.019 1.019 42 H -0.016 1.016 43 H 0.268 0.732 44 H 0.125 0.875 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.234 14.851 -18.929 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.013 3.987 3 C -0.202 4.202 4 O -0.248 6.248 5 C 0.014 3.986 6 C -0.178 4.178 7 C -0.184 4.184 8 C 0.076 3.924 9 N -0.329 5.329 10 C -0.048 4.048 11 C -0.012 4.012 12 C 0.255 3.745 13 O -0.476 6.476 14 N -0.359 5.359 15 C 0.146 3.854 16 C -0.592 4.592 17 H 0.105 0.895 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.809 3.191 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.176 1.176 24 C -0.191 4.191 25 C -0.138 4.138 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.043 0.957 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.158 0.842 39 H 0.141 0.859 40 H 0.246 0.754 41 H -0.001 1.001 42 H 0.001 0.999 43 H 0.077 0.923 44 H 0.143 0.857 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.312 15.001 -18.872 25.844 hybrid contribution -0.316 -0.758 1.129 1.396 sum 8.995 14.243 -17.743 24.466 Atomic orbital electron populations 1.22387 0.94954 1.02560 1.03733 1.22648 0.94583 0.94371 0.87107 1.21865 1.01928 0.92549 1.03810 1.86088 1.82301 1.16191 1.40202 1.18833 1.00962 0.82989 0.95802 1.21216 1.03562 0.94536 0.98456 1.20705 1.04607 0.93778 0.99355 1.17946 0.96203 0.83649 0.94581 1.46069 1.66901 1.02182 1.17771 1.21759 0.98531 0.97737 0.86793 1.21450 0.92582 0.99916 0.87266 1.22511 0.91465 0.77589 0.82964 1.90647 1.23921 1.56211 1.76853 1.46227 1.12430 1.55157 1.22123 1.18466 0.86839 0.92995 0.87149 1.21638 0.95742 1.36043 1.05752 0.89540 1.26111 0.95074 0.97003 1.01662 1.70149 1.06020 1.46755 1.34270 0.85144 0.78310 0.77943 0.77743 1.19668 1.21067 1.17639 1.20611 1.06472 0.93830 0.98199 1.20312 1.01922 0.93044 0.98511 0.93097 0.92350 0.88745 0.90155 0.91889 0.88276 0.92102 0.83375 0.83968 0.95716 0.89279 0.89245 0.84217 0.85902 0.75438 1.00149 0.99851 0.92313 0.85705 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 9.17 71.98 0.66 -2.18 16 2 C 0.07 1.17 2.85 30.59 0.09 1.26 16 3 C -0.14 -1.82 9.56 71.98 0.69 -1.13 16 4 O -0.33 -8.38 9.80 -93.54 -0.92 -9.30 16 5 C 0.06 1.63 6.60 22.49 0.15 1.78 16 6 C -0.16 -3.81 8.23 22.35 0.18 -3.62 16 7 C -0.16 -4.11 9.20 22.39 0.21 -3.90 16 8 C 0.18 5.11 6.56 38.14 0.25 5.36 16 9 N -0.62 -16.64 2.50 -726.39 -1.82 -18.45 16 10 C 0.09 2.02 10.23 127.77 1.31 3.33 16 11 C 0.12 2.96 5.68 85.63 0.49 3.45 16 12 C 0.47 18.53 7.90 87.66 0.69 19.22 16 13 O -0.60 -30.28 16.43 -3.04 -0.05 -30.33 16 14 N -0.71 -29.49 5.55 -466.79 -2.59 -32.08 16 15 C 0.27 14.94 5.43 85.63 0.46 15.41 16 16 C -0.55 -30.21 9.28 25.60 0.24 -29.97 16 17 H 0.09 4.21 7.60 -2.91 -0.02 4.18 16 18 C 0.00 0.05 5.46 84.65 0.46 0.51 16 19 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 20 Si 0.99 42.48 29.54 68.60 2.03 44.51 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.25 -10.02 7.11 99.48 0.71 -9.32 16 24 C -0.17 -5.04 9.20 22.39 0.21 -4.84 16 25 C -0.12 -3.44 9.98 22.35 0.22 -3.22 16 26 H 0.05 0.95 6.90 -2.39 -0.02 0.93 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.19 6.31 -2.39 -0.02 1.17 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.15 2.72 5.41 -2.91 -0.02 2.70 16 34 H 0.14 2.93 6.14 -2.91 -0.02 2.91 16 35 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 1.47 6.20 -2.39 -0.01 1.45 16 37 H 0.09 1.45 7.89 -2.39 -0.02 1.44 16 38 H 0.14 2.50 7.89 -2.39 -0.02 2.48 16 39 H 0.12 2.62 6.21 -2.39 -0.01 2.60 16 40 H 0.41 13.58 8.32 -92.71 -0.77 12.81 16 41 H -0.02 -1.24 8.14 -2.38 -0.02 -1.26 16 42 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 43 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.13 3.59 6.15 -2.91 -0.02 3.57 16 45 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -79.10 370.27 3.47 -75.63 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.23 Total: 25.45 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 6.30 Total: 1.45 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -4.12 Total: -107.42 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.97 Total: -39.63 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -79.10 3.47 -75.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759927386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.379 kcal (2) G-P(sol) polarization free energy of solvation -79.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds