Wall clock time and date at job start Fri Apr 10 2020 21:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46887 * 109.47044 * 2 1 4 4 C 1.46900 * 111.00417 * 296.68864 * 3 2 1 5 5 C 1.52999 * 109.46822 * 288.20237 * 4 3 2 6 6 C 1.46902 * 111.00177 * 60.64250 * 3 2 1 7 7 C 1.52999 * 109.47220 * 66.04230 * 6 3 2 8 8 O 1.42906 * 109.46837 * 64.99974 * 7 6 3 9 9 C 1.35723 * 116.99763 * 179.97438 * 8 7 6 10 10 C 1.39011 * 119.90411 * 0.25393 * 9 8 7 11 11 C 1.37684 * 120.08929 * 180.21150 * 10 9 8 12 12 C 1.39794 * 119.90686 * 359.51435 * 11 10 9 13 13 C 1.47496 * 120.09345 * 180.27545 * 12 11 10 14 14 O 1.21622 * 120.00228 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99912 * 180.02562 * 13 12 11 16 16 C 1.36909 * 119.99988 * 180.02562 * 15 13 12 17 17 H 1.07993 * 119.99596 * 0.02562 * 16 15 13 18 18 C 1.39021 * 119.99831 * 179.97438 * 16 15 13 19 19 N 1.31374 * 120.00189 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99680 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46743 * 60.00557 * 20 18 16 22 22 H 1.48501 * 109.46766 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47554 * 300.00655 * 20 18 16 24 24 C 1.39797 * 119.81414 * 0.25920 * 12 11 10 25 25 C 1.37684 * 119.90098 * 359.97438 * 24 12 11 26 26 H 1.08997 * 109.47085 * 61.07534 * 1 2 3 27 27 H 1.09005 * 109.47266 * 181.07280 * 1 2 3 28 28 H 1.09002 * 109.47192 * 301.07120 * 1 2 3 29 29 H 1.09004 * 109.46940 * 239.99636 * 2 1 3 30 30 H 1.09002 * 109.47101 * 120.00291 * 2 1 3 31 31 H 1.08991 * 109.46979 * 48.19857 * 4 3 2 32 32 H 1.08999 * 109.47117 * 168.20588 * 4 3 2 33 33 H 1.09007 * 109.47438 * 299.80010 * 5 4 3 34 34 H 1.09000 * 109.47256 * 59.80071 * 5 4 3 35 35 H 1.09003 * 109.47117 * 179.80130 * 5 4 3 36 36 H 1.09002 * 109.46994 * 306.04635 * 6 3 2 37 37 H 1.08999 * 109.47381 * 186.04038 * 6 3 2 38 38 H 1.09003 * 109.47359 * 305.00449 * 7 6 3 39 39 H 1.08997 * 109.47607 * 185.00326 * 7 6 3 40 40 H 1.08000 * 119.95370 * 359.97438 * 10 9 8 41 41 H 1.08004 * 120.04501 * 179.79571 * 11 10 9 42 42 H 0.96999 * 120.00139 * 0.02562 * 15 13 12 43 43 H 0.96997 * 120.00383 * 180.02562 * 19 18 16 44 44 H 1.08001 * 120.04798 * 180.02562 * 24 12 11 45 45 H 1.08003 * 119.94874 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6144 2.0866 -1.2253 5 6 2.4194 1.5497 -2.4104 6 6 1.5612 2.1054 1.1953 7 6 2.2060 1.4913 2.4395 8 8 3.6195 1.6959 2.3937 9 6 4.3466 1.2086 3.4310 10 6 3.7096 0.5410 4.4707 11 6 4.4429 0.0490 5.5270 12 6 5.8311 0.2125 5.5479 13 6 6.6214 -0.3183 6.6745 14 8 6.0655 -0.8997 7.5867 15 7 7.9596 -0.1591 6.6930 16 6 8.6932 -0.6523 7.7385 17 1 8.1996 -1.1693 8.5480 18 6 10.0736 -0.4886 7.7573 19 7 10.6741 0.1399 6.7722 20 14 11.0745 -1.1609 9.1841 21 1 10.8865 -2.6314 9.2710 22 1 12.5118 -0.8571 8.9670 23 1 10.6208 -0.5283 10.4486 24 6 6.4682 0.8803 4.4980 25 6 5.7267 1.3735 3.4479 26 1 -0.3633 0.4970 -0.8994 27 1 -0.3634 -1.0275 0.0192 28 1 -0.3634 0.5304 0.8802 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5518 1.9222 -1.4036 32 1 1.8029 3.1542 -1.1118 33 1 3.4820 1.7172 -2.2337 34 1 2.2337 0.4814 -2.5217 35 1 2.1163 2.0679 -3.3202 36 1 0.4767 2.0281 1.2725 37 1 1.8462 3.1546 1.1187 38 1 1.9944 0.4224 2.4685 39 1 1.7988 1.9665 3.3319 40 1 2.6375 0.4116 4.4517 41 1 3.9468 -0.4667 6.3360 42 1 8.4029 0.3049 5.9657 43 1 11.6372 0.2539 6.7851 44 1 7.5405 1.0085 4.5101 45 1 6.2181 1.8900 2.6365 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126718321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:48:00 Heat of formation + Delta-G solvation = -45.668174 kcal Electronic energy + Delta-G solvation = -24374.832641 eV Core-core repulsion = 20778.732830 eV Total energy + Delta-G solvation = -3596.099811 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.06465 -38.90505 -38.10833 -36.36487 -34.02588 -32.18130 -31.50356 -31.28283 -30.48048 -29.42735 -27.77966 -25.13908 -24.72842 -23.31117 -22.45775 -21.60422 -20.00164 -19.39356 -18.35362 -17.83924 -16.89663 -16.58444 -16.17265 -15.44131 -15.15898 -14.82729 -14.55827 -14.41769 -14.02259 -13.81613 -13.55124 -13.42564 -13.29950 -13.09346 -12.85220 -12.64484 -12.49365 -12.35361 -11.95776 -11.86021 -11.71237 -11.57816 -11.53428 -11.25247 -11.10492 -10.86365 -10.63370 -10.49350 -10.41639 -10.21167 -9.56002 -8.69867 -8.55515 -8.46009 -8.04763 -7.78862 -6.50426 -3.84359 1.50030 1.73133 3.19439 3.23613 3.24981 3.28226 3.55460 3.73832 4.13300 4.53422 4.56003 4.59153 4.70701 4.85199 4.93035 4.95324 4.98340 5.01928 5.04856 5.16112 5.19400 5.20181 5.23650 5.32086 5.34514 5.50969 5.59730 5.65475 5.70814 5.71230 5.77529 5.80430 5.97572 6.01811 6.07383 6.37716 6.60937 6.73439 6.76083 6.78387 6.96533 7.05049 7.47964 7.64407 8.01674 8.56222 9.11262 9.48355 10.03539 10.66777 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.030661 B = 0.002334 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.998694 B =11995.336454 C =12482.678318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.042 3.958 3 N -0.528 5.528 4 C 0.046 3.954 5 C -0.147 4.147 6 C 0.051 3.949 7 C 0.063 3.937 8 O -0.299 6.299 9 C 0.128 3.872 10 C -0.219 4.219 11 C -0.038 4.038 12 C -0.133 4.133 13 C 0.471 3.529 14 O -0.601 6.601 15 N -0.546 5.546 16 C -0.296 4.296 17 H 0.106 0.894 18 C 0.023 3.977 19 N -0.893 5.893 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.064 4.064 25 C -0.154 4.154 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.123 0.877 41 H 0.132 0.868 42 H 0.394 0.606 43 H 0.275 0.725 44 H 0.133 0.867 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.015 4.793 -16.956 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.086 4.086 3 N -0.251 5.251 4 C -0.082 4.082 5 C -0.205 4.205 6 C -0.076 4.076 7 C -0.013 4.013 8 O -0.212 6.212 9 C 0.082 3.918 10 C -0.237 4.237 11 C -0.058 4.058 12 C -0.136 4.136 13 C 0.260 3.740 14 O -0.488 6.488 15 N -0.181 5.181 16 C -0.425 4.425 17 H 0.124 0.876 18 C -0.180 4.180 19 N -0.533 5.533 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.083 4.083 25 C -0.173 4.173 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.141 0.859 41 H 0.150 0.850 42 H 0.228 0.772 43 H 0.085 0.915 44 H 0.151 0.849 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.539 4.551 -16.534 24.530 hybrid contribution -0.255 -0.112 0.341 0.440 sum -17.794 4.439 -16.193 24.465 Atomic orbital electron populations 1.22453 0.98453 1.02598 1.01927 1.22260 0.92566 0.90430 1.03345 1.62203 1.59427 1.02049 1.01462 1.22136 0.97466 0.98462 0.90107 1.21764 1.01336 1.00938 0.96454 1.22224 0.97067 0.99103 0.89238 1.22799 0.80098 1.00695 0.97694 1.86097 1.18808 1.74482 1.41787 1.19135 0.91424 0.94199 0.87073 1.21081 0.99868 1.06205 0.96576 1.20981 0.92784 0.95386 0.96600 1.20240 0.94401 1.02315 0.96690 1.17675 0.82695 0.86239 0.87412 1.90586 1.70781 1.48252 1.39219 1.41879 1.05103 1.49093 1.21984 1.19767 0.88958 1.32863 1.00950 0.87583 1.25360 0.97016 0.97073 0.98570 1.69583 1.11188 1.40850 1.31640 0.85850 0.77968 0.79442 0.80615 1.19710 1.20828 1.19719 1.21251 1.00022 0.94883 0.92161 1.20256 0.90574 1.05734 1.00716 0.92366 0.91868 0.92400 0.90299 0.90380 0.94450 0.90948 0.91643 0.92786 0.92536 0.92360 0.89629 0.91956 0.91774 0.85920 0.84973 0.77151 0.91465 0.84889 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 9.28 37.16 0.34 -0.89 16 2 C 0.04 0.33 5.70 -3.83 -0.02 0.31 16 3 N -0.53 -4.65 4.62 -234.64 -1.08 -5.73 16 4 C 0.05 0.33 5.56 -3.82 -0.02 0.31 16 5 C -0.15 -1.03 9.96 37.16 0.37 -0.66 16 6 C 0.05 0.42 5.11 -3.82 -0.02 0.40 16 7 C 0.06 0.62 4.79 37.16 0.18 0.80 16 8 O -0.30 -4.04 10.07 -18.88 -0.19 -4.23 16 9 C 0.13 1.95 6.70 -39.01 -0.26 1.69 16 10 C -0.22 -3.31 9.01 -39.50 -0.36 -3.66 16 11 C -0.04 -0.69 9.59 -39.20 -0.38 -1.07 16 12 C -0.13 -2.76 5.88 -104.96 -0.62 -3.37 16 13 C 0.47 12.03 7.71 -12.49 -0.10 11.93 16 14 O -0.60 -17.19 15.91 5.26 0.08 -17.10 16 15 N -0.55 -14.40 5.23 -11.93 -0.06 -14.46 16 16 C -0.30 -8.34 9.68 -14.99 -0.15 -8.49 16 17 H 0.11 3.11 7.15 -52.49 -0.38 2.73 16 18 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 19 N -0.89 -24.12 13.05 55.50 0.72 -23.40 16 20 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 C -0.06 -1.16 9.53 -39.20 -0.37 -1.53 16 25 C -0.15 -2.47 9.97 -39.50 -0.39 -2.86 16 26 H 0.06 0.35 6.30 -51.93 -0.33 0.02 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.36 6.23 -51.93 -0.32 0.03 16 29 H 0.08 0.61 6.57 -51.93 -0.34 0.27 16 30 H 0.08 0.69 6.34 -51.93 -0.33 0.36 16 31 H 0.04 0.24 5.92 -51.93 -0.31 -0.07 16 32 H 0.07 0.51 7.81 -51.93 -0.41 0.10 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.38 6.69 -51.93 -0.35 0.03 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.38 6.00 -51.93 -0.31 0.06 16 37 H 0.09 0.70 7.86 -51.93 -0.41 0.29 16 38 H 0.06 0.59 5.82 -51.93 -0.30 0.29 16 39 H 0.06 0.56 7.66 -51.93 -0.40 0.17 16 40 H 0.12 1.49 6.28 -52.49 -0.33 1.16 16 41 H 0.13 2.43 7.64 -52.48 -0.40 2.03 16 42 H 0.39 9.80 5.92 -40.82 -0.24 9.56 16 43 H 0.28 7.00 8.31 -40.82 -0.34 6.67 16 44 H 0.13 2.35 6.39 -52.49 -0.34 2.02 16 45 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -31.81 361.10 -8.30 -40.12 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.31 Total: 10.08 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -1.88 Total: -6.59 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -0.42 Total: -43.59 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.11 Total: -21.33 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.81 -8.30 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126718321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.550 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds