Wall clock time and date at job start Fri Apr 10 2020 21:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 C 1.52996 * 109.47210 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47094 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99990 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99575 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99588 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47111 * 180.02562 * 13 12 10 15 15 N 1.46496 * 109.47243 * 179.97438 * 14 13 12 16 16 C 1.36936 * 120.00055 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99869 * 0.02562 * 16 15 14 18 18 C 1.38812 * 120.00058 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00176 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00311 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46741 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47416 * 120.00101 * 20 18 16 23 23 H 1.48502 * 109.47079 * 240.00553 * 20 18 16 24 24 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 25 25 C 1.38143 * 120.05579 * 359.44512 * 24 6 5 26 26 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 28 28 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 29 29 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 32 32 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 33 33 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 34 34 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 35 35 H 1.08997 * 109.47037 * 300.00424 * 9 8 7 36 36 H 1.09000 * 109.46839 * 60.00324 * 9 8 7 37 37 H 0.96992 * 120.00688 * 0.02562 * 12 10 9 38 38 H 1.09008 * 109.47050 * 300.00154 * 13 12 10 39 39 H 1.09003 * 109.46830 * 59.99827 * 13 12 10 40 40 H 1.09005 * 109.46552 * 299.99865 * 14 13 12 41 41 H 1.08991 * 109.47305 * 59.99754 * 14 13 12 42 42 H 0.97000 * 119.99972 * 359.97438 * 15 14 13 43 43 H 0.97001 * 120.00314 * 180.02562 * 19 18 16 44 44 H 1.08001 * 119.97259 * 179.69844 * 24 6 5 45 45 H 1.07992 * 120.02912 * 180.24892 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 6 4.9107 6.8382 -1.4382 10 6 5.1387 7.2871 -2.8586 11 8 4.7808 6.5857 -3.7811 12 7 5.7402 8.4680 -3.1038 13 6 5.9613 8.9046 -4.4847 14 6 6.6566 10.2675 -4.4836 15 7 6.8782 10.7038 -5.8643 16 6 7.4895 11.9035 -6.1135 17 1 7.8086 12.5279 -5.2921 18 6 7.6999 12.3168 -7.4219 19 7 7.3115 11.5556 -8.4230 20 14 8.5345 13.9531 -7.7619 21 1 8.8711 14.6138 -6.4753 22 1 9.7777 13.7224 -8.5406 23 1 7.6174 14.8242 -8.5400 24 6 1.9209 3.6048 0.0081 25 6 1.2914 2.3752 0.0014 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 4.0208 0.3801 -0.0005 30 1 5.1344 2.5752 -0.0008 31 1 3.3580 5.7459 0.5176 32 1 4.9441 4.9378 0.5160 33 1 4.8445 4.7475 -1.9543 34 1 3.2585 5.5555 -1.9527 35 1 4.2826 7.5651 -0.9233 36 1 5.8689 6.7577 -0.9248 37 1 6.0268 9.0288 -2.3662 38 1 6.5890 8.1773 -4.9997 39 1 5.0031 8.9855 -4.9980 40 1 6.0291 10.9949 -3.9685 41 1 7.6147 10.1861 -3.9704 42 1 6.5919 10.1429 -6.6021 43 1 7.4589 11.8442 -9.3373 44 1 1.3340 4.5114 0.0143 45 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133278786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:44:36 Heat of formation + Delta-G solvation = -57.203097 kcal Electronic energy + Delta-G solvation = -23020.348876 eV Core-core repulsion = 19423.748873 eV Total energy + Delta-G solvation = -3596.600003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.48146 -39.58495 -38.14231 -35.77576 -34.69369 -33.80676 -31.51922 -31.34586 -30.80562 -28.41162 -27.67189 -26.23851 -23.74315 -22.99905 -22.51266 -21.44015 -21.00528 -20.09720 -18.50640 -17.35304 -16.87888 -16.68574 -16.10831 -15.90543 -15.78947 -15.31885 -14.82470 -14.61655 -14.54175 -14.11921 -13.83151 -13.71733 -13.40972 -13.32546 -13.16766 -12.86791 -12.61863 -12.37599 -12.09092 -11.93992 -11.38970 -11.34248 -11.19176 -11.16692 -11.10723 -10.83133 -10.82935 -10.80255 -10.09210 -9.86002 -9.64399 -9.30892 -8.98209 -8.80338 -8.38117 -6.99609 -5.80019 -3.10768 1.03412 1.10434 2.77968 2.91064 3.28508 3.41769 3.45614 3.48469 3.49752 4.41842 4.47631 4.54801 4.57399 4.66852 4.73037 4.73872 4.82442 4.99137 5.03609 5.06852 5.08762 5.24768 5.36219 5.40780 5.45475 5.50109 5.52987 5.59557 5.70651 5.78786 5.92565 5.97068 5.98166 6.04417 6.15779 6.17830 6.37048 6.45411 6.51332 6.70923 6.76655 7.04005 7.65600 7.66482 8.36478 8.38911 9.48874 10.03922 10.38606 11.42612 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.042873 B = 0.001581 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.929862 B =17710.795726 C =17980.416885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.150 4.150 5 C -0.076 4.076 6 C -0.115 4.115 7 C -0.077 4.077 8 C -0.099 4.099 9 C -0.140 4.140 10 C 0.507 3.493 11 O -0.543 6.543 12 N -0.726 5.726 13 C 0.110 3.890 14 C 0.145 3.855 15 N -0.730 5.730 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.076 4.076 25 C -0.206 4.206 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.399 0.601 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.125 0.875 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.055 -20.226 23.654 33.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.074 3.926 4 C -0.168 4.168 5 C -0.095 4.095 6 C -0.115 4.115 7 C -0.114 4.114 8 C -0.137 4.137 9 C -0.181 4.181 10 C 0.293 3.707 11 O -0.420 6.420 12 N -0.377 5.377 13 C -0.014 4.014 14 C 0.016 3.984 15 N -0.375 5.375 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.094 4.094 25 C -0.225 4.225 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.233 0.767 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.143 0.857 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.152 -20.757 22.988 33.271 hybrid contribution 0.212 1.171 -0.220 1.210 sum -11.940 -19.586 22.769 32.320 Atomic orbital electron populations 1.23049 0.78400 1.03922 1.01393 1.86064 1.21393 1.27072 1.88836 1.19052 0.92432 0.84124 0.97013 1.20431 0.91362 0.98729 1.06289 1.20892 0.99930 0.90984 0.97644 1.19804 0.93538 0.95333 1.02811 1.20588 1.00416 0.93143 0.97295 1.21330 1.01738 0.95076 0.95520 1.21694 1.03009 0.99110 0.94239 1.20686 0.77434 0.81000 0.91601 1.90717 1.50617 1.54120 1.46548 1.45989 1.61154 1.21041 1.09550 1.21564 1.01061 0.97065 0.81680 1.20756 0.96554 0.91408 0.89634 1.42202 1.72228 1.22501 1.00563 1.19245 1.30879 0.95470 0.91913 0.90970 1.24783 1.01686 0.98861 0.95519 1.69680 1.52185 1.37742 0.98237 0.86079 0.78802 0.83247 0.77792 1.20503 1.21767 1.21778 1.20856 0.94053 0.97041 0.97497 1.21222 0.99981 0.92399 1.08853 0.88268 0.92689 0.92579 0.85265 0.85249 0.90965 0.90873 0.90956 0.91045 0.88934 0.88904 0.76711 0.91392 0.91402 0.95836 0.95829 0.78013 0.93410 0.85732 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.89 10.50 -19.44 -0.20 -3.10 16 3 C 0.12 1.12 6.69 -39.21 -0.26 0.86 16 4 C -0.15 -1.36 9.99 -39.43 -0.39 -1.75 16 5 C -0.08 -0.65 9.69 -39.61 -0.38 -1.03 16 6 C -0.11 -0.97 5.14 -104.60 -0.54 -1.51 16 7 C -0.08 -0.54 5.34 -27.88 -0.15 -0.69 16 8 C -0.10 -0.92 4.49 -26.73 -0.12 -1.04 16 9 C -0.14 -1.22 5.70 -27.88 -0.16 -1.38 16 10 C 0.51 6.94 7.83 -10.98 -0.09 6.86 16 11 O -0.54 -9.93 15.98 5.56 0.09 -9.84 16 12 N -0.73 -9.71 5.56 -60.29 -0.33 -10.05 16 13 C 0.11 1.91 5.79 -4.04 -0.02 1.89 16 14 C 0.14 2.84 6.37 -4.05 -0.03 2.82 16 15 N -0.73 -18.68 5.60 -59.92 -0.34 -19.02 16 16 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 C -0.08 -0.64 9.69 -39.61 -0.38 -1.02 16 25 C -0.21 -1.74 9.04 -39.43 -0.36 -2.09 16 26 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 28 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.07 0.77 8.10 -51.92 -0.42 0.35 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.40 4.07 8.47 -40.82 -0.35 3.72 16 38 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.39 10.48 7.67 -40.82 -0.31 10.17 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 45 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 LS Contribution 380.06 15.07 5.73 5.73 Total: -1.00 -35.00 380.06 -8.73 -43.73 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.24 Total: 7.29 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.14 Total: -4.39 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.05 Total: -56.72 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.12 Total: -12.93 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.00 -8.73 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133278786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.471 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds