Wall clock time and date at job start Fri Apr 10 2020 21:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99665 * 2 1 4 4 H 1.48501 * 109.46877 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47533 * 300.00160 * 3 2 1 6 6 H 1.48496 * 109.47125 * 60.00452 * 3 2 1 7 7 C 1.37868 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00284 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47159 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.39823 * 119.99590 * 179.97438 * 12 11 10 14 14 C 1.38899 * 120.05274 * 0.02562 * 13 12 11 15 15 C 1.38092 * 119.95019 * 179.97438 * 14 13 12 16 16 C 1.38481 * 120.05578 * 0.02562 * 15 14 13 17 17 F 1.35092 * 119.95783 * 179.97438 * 16 15 14 18 18 C 1.38453 * 120.09385 * 0.27456 * 16 15 14 19 19 C 1.50697 * 119.97504 * 179.72144 * 18 16 15 20 20 N 1.46897 * 109.47121 * 74.60363 * 19 18 16 21 21 C 1.48537 * 110.99942 * 58.32763 * 20 19 18 22 22 C 1.54937 * 103.22975 * 159.71821 * 21 20 19 23 23 C 1.54591 * 102.91947 * 322.59061 * 22 21 20 24 24 C 1.47897 * 111.00488 * 175.72374 * 20 19 18 25 25 C 1.38138 * 120.04651 * 359.45015 * 18 16 15 26 26 H 0.97007 * 120.00381 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47261 * 60.00700 * 9 7 2 28 28 H 1.08999 * 109.47488 * 299.99937 * 9 7 2 29 29 H 1.09002 * 109.47124 * 60.00567 * 10 9 7 30 30 H 1.08997 * 109.47485 * 299.99925 * 10 9 7 31 31 H 1.09002 * 109.46614 * 60.00285 * 11 10 9 32 32 H 1.09002 * 109.46893 * 300.00800 * 11 10 9 33 33 H 0.96994 * 120.00087 * 0.02562 * 12 11 10 34 34 H 1.08001 * 120.02141 * 359.95730 * 14 13 12 35 35 H 1.08006 * 119.97082 * 179.97438 * 15 14 13 36 36 H 1.08993 * 109.47252 * 194.60660 * 19 18 16 37 37 H 1.08999 * 109.47267 * 314.60771 * 19 18 16 38 38 H 1.08997 * 110.67008 * 278.16293 * 21 20 19 39 39 H 1.09010 * 110.66548 * 41.28772 * 21 20 19 40 40 H 1.08994 * 110.72762 * 204.22813 * 22 21 20 41 41 H 1.09005 * 110.71751 * 80.94444 * 22 21 20 42 42 H 1.09001 * 110.30982 * 263.03334 * 23 22 21 43 43 H 1.09006 * 110.30525 * 140.87278 * 23 22 21 44 44 H 1.09002 * 109.91479 * 333.51829 * 24 20 19 45 45 H 1.09004 * 109.91705 * 94.60635 * 24 20 19 46 46 H 1.07998 * 120.02396 * 180.27734 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4990 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0012 12 7 2.4324 -6.1005 -0.0018 13 6 1.9663 -7.4188 -0.0008 14 6 0.6010 -7.6738 0.0002 15 6 0.1430 -8.9766 0.0006 16 6 1.0437 -10.0284 0.0006 17 9 0.5935 -11.3021 0.0015 18 6 2.4051 -9.7766 0.0058 19 6 3.3829 -10.9232 0.0121 20 7 3.4265 -11.5369 -1.3218 21 6 3.8159 -10.5415 -2.3532 22 6 4.3147 -11.4226 -3.5260 23 6 5.0425 -12.5796 -2.8038 24 6 4.4510 -12.6019 -1.3822 25 6 2.8678 -8.4750 -0.0003 26 1 -0.4851 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8726 -3.6047 0.8878 30 1 2.8713 -3.6039 -0.8922 31 1 0.8528 -5.0447 -0.8905 32 1 0.8546 -5.0449 0.8894 33 1 3.3860 -5.9232 -0.0021 34 1 -0.1019 -6.8538 0.0009 35 1 -0.9186 -9.1753 0.0018 36 1 4.3742 -10.5540 0.2747 37 1 3.0665 -11.6666 0.7438 38 1 2.9551 -9.9464 -2.6581 39 1 4.6174 -9.9003 -1.9859 40 1 5.0066 -10.8670 -4.1589 41 1 3.4747 -11.7998 -4.1093 42 1 6.1145 -12.3862 -2.7646 43 1 4.8461 -13.5247 -3.3102 44 1 5.2348 -12.4050 -0.6507 45 1 3.9921 -13.5703 -1.1829 46 1 3.9298 -8.2790 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168435570.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:45:44 Heat of formation + Delta-G solvation = -49.423936 kcal Electronic energy + Delta-G solvation = -24245.915554 eV Core-core repulsion = 20662.025671 eV Total energy + Delta-G solvation = -3583.889884 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.55812 -40.68397 -39.52343 -37.32460 -35.46298 -34.13784 -33.20126 -31.39666 -29.95726 -29.67566 -27.71466 -26.61874 -24.80065 -23.71446 -22.52383 -21.95694 -21.69511 -21.24383 -18.55551 -18.34131 -17.87471 -17.46491 -16.93029 -16.77728 -16.48434 -16.30932 -16.11369 -15.61536 -15.31069 -14.95519 -14.51332 -14.37044 -14.26780 -14.19930 -13.81925 -13.75177 -13.58603 -13.27349 -13.05229 -12.86099 -12.74751 -12.53308 -12.44121 -12.30152 -12.19558 -12.00881 -11.70038 -11.69112 -11.45482 -11.42319 -11.17249 -10.73764 -10.56506 -9.92864 -9.35954 -8.25982 -8.21059 -6.31685 0.26917 0.47563 1.40098 1.40806 1.53363 2.38002 2.49334 2.67371 3.12923 3.16844 3.54117 3.58313 3.76694 3.83628 3.95000 4.09527 4.16109 4.23047 4.25086 4.36144 4.36333 4.44003 4.58542 4.59311 4.64076 4.72488 4.76166 4.91806 4.97537 4.97855 4.98623 5.07731 5.08315 5.16504 5.19065 5.27375 5.31604 5.34092 5.37234 5.50381 5.72030 5.84008 5.84506 5.96229 6.04489 6.21294 6.35619 6.83591 6.86922 7.37806 8.90884 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.022596 B = 0.002272 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.856987 B =12321.891553 C =13148.289195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.025 3.975 10 C -0.103 4.103 11 C 0.135 3.865 12 N -0.737 5.737 13 C 0.206 3.794 14 C -0.183 4.183 15 C -0.107 4.107 16 C 0.034 3.966 17 F -0.149 7.149 18 C -0.070 4.070 19 C 0.093 3.907 20 N -0.527 5.527 21 C 0.037 3.963 22 C -0.124 4.124 23 C -0.126 4.126 24 C 0.033 3.967 25 C -0.165 4.165 26 H 0.263 0.737 27 H -0.005 1.005 28 H -0.005 1.005 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.407 0.593 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.079 0.921 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.705 -25.531 -2.749 27.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.079 0.921 9 C -0.013 4.013 10 C -0.141 4.141 11 C 0.011 3.989 12 N -0.366 5.366 13 C 0.102 3.898 14 C -0.206 4.206 15 C -0.126 4.126 16 C 0.013 3.987 17 F -0.128 7.128 18 C -0.072 4.072 19 C -0.035 4.035 20 N -0.252 5.252 21 C -0.091 4.091 22 C -0.162 4.162 23 C -0.164 4.164 24 C -0.095 4.095 25 C -0.188 4.188 26 H 0.072 0.928 27 H 0.014 0.986 28 H 0.014 0.986 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.243 0.757 34 H 0.148 0.852 35 H 0.162 0.838 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.892 -25.533 -2.833 27.185 hybrid contribution 0.753 1.376 0.297 1.597 sum 9.645 -24.157 -2.536 26.135 Atomic orbital electron populations 1.70093 1.07745 1.27710 1.51725 1.25967 0.95769 1.03361 0.94850 0.85417 0.79124 0.78913 0.77703 1.18533 1.20503 1.20507 1.21705 0.93591 0.92288 1.50347 0.92060 1.18936 0.94381 0.92692 0.95259 1.21559 0.98515 0.92663 1.01402 1.21266 0.91996 0.85169 1.00493 1.44776 1.09006 1.01572 1.81266 1.17989 0.92957 0.85079 0.93820 1.20665 0.94200 0.96822 1.08876 1.21021 1.00349 0.91249 1.00008 1.17351 0.92286 0.78683 1.10413 1.91421 1.89750 1.37003 1.94660 1.19550 0.92382 0.94872 1.00350 1.21089 0.96589 0.93827 0.91983 1.64821 1.46171 1.10342 1.03821 1.23186 0.98956 0.94475 0.92457 1.22487 1.00254 0.96512 0.96916 1.22388 1.00037 0.99501 0.94479 1.22929 0.92970 0.95820 0.97753 1.20421 0.99589 0.89740 1.09054 0.92783 0.98630 0.98614 0.92207 0.92201 0.92829 0.92805 0.75746 0.85161 0.83817 0.92136 0.89726 0.91828 0.93245 0.89903 0.91406 0.90354 0.90253 0.92923 0.90267 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.29 21.44 0.28 -55.52 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.10 -3.85 5.27 30.60 0.16 -3.69 16 11 C 0.14 4.19 4.91 86.38 0.42 4.62 16 12 N -0.74 -18.84 5.74 -339.33 -1.95 -20.79 16 13 C 0.21 5.16 6.65 38.17 0.25 5.41 16 14 C -0.18 -4.69 9.31 22.39 0.21 -4.48 16 15 C -0.11 -2.61 10.02 22.29 0.22 -2.39 16 16 C 0.03 0.87 7.24 22.38 0.16 1.03 16 17 F -0.15 -4.06 16.75 44.97 0.75 -3.31 16 18 C -0.07 -1.56 4.41 -19.84 -0.09 -1.65 16 19 C 0.09 1.75 4.65 85.56 0.40 2.15 16 20 N -0.53 -10.08 5.34 -887.59 -4.74 -14.82 16 21 C 0.04 0.66 5.58 86.65 0.48 1.15 16 22 C -0.12 -1.76 7.06 31.80 0.22 -1.54 16 23 C -0.13 -1.49 6.93 31.47 0.22 -1.27 16 24 C 0.03 0.47 6.70 86.44 0.58 1.05 16 25 C -0.16 -3.57 9.32 22.39 0.21 -3.36 16 26 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 27 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 1.71 7.95 -2.39 -0.02 1.69 16 32 H 0.05 1.71 7.95 -2.39 -0.02 1.70 16 33 H 0.41 9.03 8.49 -92.71 -0.79 8.24 16 34 H 0.13 3.34 6.73 -2.91 -0.02 3.32 16 35 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.06 0.96 7.78 -2.39 -0.02 0.94 16 37 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16 38 H 0.06 1.38 7.96 -2.39 -0.02 1.36 16 39 H 0.05 0.83 8.02 -2.38 -0.02 0.81 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 42 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.08 0.82 8.14 -2.38 -0.02 0.81 16 44 H 0.05 0.66 7.67 -2.39 -0.02 0.64 16 45 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 46 H 0.14 2.49 8.00 -2.91 -0.02 2.46 16 Total: -1.00 -63.01 375.58 0.84 -62.17 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.17 Total: 17.65 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 4.30 Total: -30.82 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -6.41 Total: -91.13 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.75 Total: -3.31 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -63.01 0.84 -62.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168435570.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.746 kcal (2) G-P(sol) polarization free energy of solvation -63.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds