Wall clock time and date at job start Fri Apr 10 2020 21:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30756 * 125.61401 * 2 1 4 4 C 1.33573 * 109.14591 * 180.02562 * 3 2 1 5 5 C 1.35023 * 107.98038 * 359.94631 * 4 3 2 6 6 N 1.35302 * 125.61631 * 180.02562 * 2 1 3 7 7 H 0.96995 * 126.49999 * 0.03399 * 6 2 1 8 8 C 1.50652 * 124.45839 * 180.15827 * 5 4 3 9 9 C 1.53407 * 108.37927 * 16.40361 * 8 5 4 10 10 H 1.08997 * 109.47563 * 70.35596 * 9 8 5 11 11 C 1.50700 * 109.47382 * 190.36605 * 9 8 5 12 12 O 1.21279 * 120.00113 * 119.97863 * 11 9 8 13 13 N 1.34784 * 119.99961 * 299.97631 * 11 9 8 14 14 C 1.46494 * 119.99635 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47001 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47535 * 180.02562 * 15 14 13 17 17 N 1.46495 * 109.47716 * 179.97438 * 16 15 14 18 18 C 1.36933 * 120.00288 * 179.97438 * 17 16 15 19 19 H 1.07993 * 119.99918 * 359.97438 * 18 17 16 20 20 C 1.38819 * 119.99685 * 179.97438 * 18 17 16 21 21 N 1.31610 * 120.00442 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99717 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47245 * 89.99676 * 22 20 18 24 24 H 1.48498 * 109.46919 * 210.00361 * 22 20 18 25 25 H 1.48501 * 109.46965 * 329.99868 * 22 20 18 26 26 C 1.53112 * 109.44708 * 310.36081 * 9 8 5 27 27 C 1.50865 * 128.03286 * 179.97438 * 4 3 2 28 28 H 1.08993 * 109.47227 * 269.98064 * 1 2 3 29 29 H 1.09004 * 109.47238 * 29.98228 * 1 2 3 30 30 H 1.08998 * 109.46833 * 149.97640 * 1 2 3 31 31 H 1.09004 * 109.68295 * 256.69100 * 8 5 4 32 32 H 1.08995 * 109.68815 * 136.13109 * 8 5 4 33 33 H 0.96995 * 120.00015 * 359.72695 * 13 11 9 34 34 H 1.09005 * 109.47306 * 299.99972 * 14 13 11 35 35 H 1.09002 * 109.47518 * 60.00210 * 14 13 11 36 36 H 1.09005 * 109.46767 * 299.99934 * 15 14 13 37 37 H 1.08996 * 109.47766 * 59.99412 * 15 14 13 38 38 H 1.09005 * 109.46889 * 299.99675 * 16 15 14 39 39 H 1.09004 * 109.47073 * 59.99170 * 16 15 14 40 40 H 0.97003 * 119.99919 * 359.97438 * 17 16 15 41 41 H 0.96996 * 120.00487 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.45885 * 190.03471 * 26 9 8 43 43 H 1.09004 * 109.46196 * 310.00415 * 26 9 8 44 44 H 1.09005 * 109.67562 * 76.94108 * 27 4 3 45 45 H 1.09005 * 109.70766 * 316.42268 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2685 1.0630 0.0000 4 6 3.5494 0.6843 -0.0006 5 6 3.5850 -0.6654 0.0003 6 7 2.2950 -1.0999 -0.0005 7 1 1.9971 -2.0230 -0.0014 8 6 4.8493 -1.4847 0.0034 9 6 6.0138 -0.5756 0.4165 10 1 5.9207 -0.3231 1.4727 11 6 7.3184 -1.2935 0.1847 12 8 8.1411 -0.8265 -0.5742 13 7 7.5709 -2.4547 0.8207 14 6 8.8393 -3.1523 0.5957 15 6 8.8716 -4.4339 1.4308 16 6 10.1965 -5.1622 1.1964 17 7 10.2278 -6.3890 1.9965 18 6 11.3225 -7.2102 1.9483 19 1 12.1626 -6.9537 1.3201 20 6 11.3522 -8.3724 2.7069 21 7 10.3281 -8.6852 3.4720 22 14 12.8452 -9.4931 2.6405 23 1 13.8189 -9.0827 3.6838 24 1 12.4223 -10.8959 2.8823 25 1 13.4813 -9.3915 1.3025 26 6 5.9810 0.7066 -0.4197 27 6 4.7776 1.5604 -0.0013 28 1 -0.3633 -0.0003 1.0276 29 1 -0.3634 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 5.0310 -1.8832 -0.9947 32 1 4.7535 -2.3049 0.7149 33 1 6.9146 -2.8262 1.4307 34 1 8.9327 -3.4049 -0.4605 35 1 9.6665 -2.5060 0.8892 36 1 8.7780 -4.1816 2.4872 37 1 8.0445 -5.0801 1.1371 38 1 10.2905 -5.4144 0.1401 39 1 11.0235 -4.5158 1.4906 40 1 9.4730 -6.6196 2.5604 41 1 10.3490 -9.4971 4.0023 42 1 6.8999 1.2698 -0.2570 43 1 5.8949 0.4494 -1.4755 44 1 4.9422 1.9625 0.9984 45 1 4.6448 2.3790 -0.7088 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161323213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:46:09 Heat of formation + Delta-G solvation = 4.079562 kcal Electronic energy + Delta-G solvation = -24007.014667 eV Core-core repulsion = 20445.364830 eV Total energy + Delta-G solvation = -3561.649836 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.67400 -40.06289 -36.77878 -35.93502 -34.41357 -33.51715 -32.09474 -31.60949 -30.42543 -29.40107 -27.84729 -25.36673 -23.60960 -23.22871 -22.25053 -21.25020 -21.17961 -20.31256 -19.25373 -17.93430 -17.21759 -16.79897 -16.09703 -15.90504 -15.76362 -15.06749 -14.64707 -14.25488 -14.18736 -14.00725 -13.93529 -13.77691 -13.31319 -13.25369 -13.07510 -12.92568 -12.86564 -12.43317 -12.06925 -11.83573 -11.67252 -11.34566 -11.20328 -10.99427 -10.94916 -10.80822 -10.65298 -10.21048 -10.13994 -10.11589 -9.86196 -9.70609 -9.10069 -8.90857 -8.35637 -6.96694 -5.80267 -3.09192 1.63711 2.43225 2.73289 2.74853 3.08575 3.41975 3.47145 3.48796 3.93615 4.26292 4.35809 4.45834 4.56516 4.65708 4.78609 4.80313 4.94862 5.04603 5.08125 5.10878 5.16776 5.26598 5.26919 5.35588 5.45432 5.54602 5.58344 5.59235 5.74723 5.82509 5.93961 5.98285 6.01687 6.03292 6.15322 6.28396 6.40897 6.45706 6.75328 6.79566 7.02691 7.40658 7.67580 7.77717 8.11972 8.38727 9.49903 10.06814 10.41385 11.42750 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.025353 B = 0.002029 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.125001 B =13798.869310 C =14736.129204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.200 3.800 3 N -0.482 5.482 4 C 0.010 3.990 5 C -0.027 4.027 6 N -0.557 5.557 7 H 0.419 0.581 8 C -0.032 4.032 9 C -0.100 4.100 10 H 0.103 0.897 11 C 0.516 3.484 12 O -0.536 6.536 13 N -0.727 5.727 14 C 0.121 3.879 15 C -0.137 4.137 16 C 0.156 3.844 17 N -0.734 5.734 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.098 4.098 27 C -0.034 4.034 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.400 0.600 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.330 18.631 -6.427 28.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.063 4.063 3 N -0.202 5.202 4 C -0.120 4.120 5 C -0.143 4.143 6 N -0.160 5.160 7 H 0.257 0.743 8 C -0.071 4.071 9 C -0.122 4.122 10 H 0.121 0.879 11 C 0.302 3.698 12 O -0.413 6.413 13 N -0.378 5.378 14 C -0.002 4.002 15 C -0.176 4.176 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.137 4.137 27 C -0.072 4.072 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.234 0.766 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.824 19.734 -7.038 28.844 hybrid contribution 0.278 -2.404 0.602 2.494 sum -19.547 17.330 -6.436 26.904 Atomic orbital electron populations 1.20173 0.84700 1.04068 1.03584 1.23335 0.95497 0.81318 1.06138 1.69946 1.01727 1.28576 1.19937 1.20568 0.92889 0.91143 1.07416 1.20754 0.85491 0.95557 1.12475 1.42788 1.06092 1.10048 1.57051 0.74314 1.19993 0.88013 0.96111 1.02994 1.21334 0.91508 0.96346 1.03013 0.87860 1.20463 0.88398 0.80822 0.80165 1.90715 1.48247 1.65995 1.36339 1.46127 1.20793 1.23791 1.47126 1.21376 0.85084 0.93268 1.00516 1.21943 1.00515 0.95106 0.99995 1.20524 0.93094 0.88556 0.95049 1.42334 1.20557 1.22236 1.52677 1.19251 0.95555 1.00915 1.21414 0.91066 1.24759 0.98034 0.98607 0.99705 1.69651 1.30351 1.26562 1.31790 0.86158 0.82122 0.80107 0.77634 1.21665 1.21751 1.20706 1.21440 0.98324 0.94007 0.99882 1.19989 0.88476 0.96314 1.02467 0.90134 0.89100 0.90823 0.89733 0.90116 0.76619 0.91321 0.91289 0.91311 0.91371 0.96053 0.96027 0.78329 0.93500 0.89703 0.90903 0.90427 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.20 1.72 8.16 -154.96 -1.26 0.46 16 3 N -0.48 -5.56 11.25 -6.95 -0.08 -5.64 16 4 C 0.01 0.11 6.98 -82.90 -0.58 -0.47 16 5 C -0.03 -0.24 7.08 -81.85 -0.58 -0.82 16 6 N -0.56 -4.06 6.15 -6.53 -0.04 -4.10 16 7 H 0.42 1.72 8.96 -40.82 -0.37 1.35 16 8 C -0.03 -0.24 5.43 -27.70 -0.15 -0.39 16 9 C -0.10 -0.84 2.50 -91.50 -0.23 -1.07 16 10 H 0.10 0.75 8.12 -51.93 -0.42 0.33 16 11 C 0.52 5.88 7.13 -10.98 -0.08 5.80 16 12 O -0.54 -8.24 15.81 5.56 0.09 -8.16 16 13 N -0.73 -7.63 5.46 -60.29 -0.33 -7.95 16 14 C 0.12 1.57 5.67 -4.04 -0.02 1.54 16 15 C -0.14 -2.01 5.44 -26.73 -0.15 -2.16 16 16 C 0.16 3.05 6.26 -4.05 -0.03 3.03 16 17 N -0.73 -18.47 5.60 -59.91 -0.34 -18.80 16 18 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 19 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 22 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 26 C -0.10 -0.88 4.64 -26.48 -0.12 -1.00 16 27 C -0.03 -0.30 6.30 -27.61 -0.17 -0.48 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.66 8.11 -51.93 -0.42 0.23 16 32 H 0.08 0.45 7.91 -51.93 -0.41 0.04 16 33 H 0.40 3.20 8.16 -40.82 -0.33 2.87 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.38 10.01 7.67 -40.82 -0.31 9.70 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.08 0.79 7.76 -51.93 -0.40 0.39 16 43 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -35.80 370.31 -9.94 -45.74 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.29 Total: 6.30 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -3.24 Total: -2.93 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: -0.06 Total: -63.90 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.80 -9.94 -45.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161323213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.822 kcal (2) G-P(sol) polarization free energy of solvation -35.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds