Wall clock time and date at job start Fri Apr 10 2020 21:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46739 * 2 1 4 4 H 1.08994 * 109.47205 * 304.99635 * 3 2 1 5 5 C 1.50705 * 109.46792 * 185.00101 * 3 2 1 6 6 H 1.07997 * 119.99919 * 239.99880 * 5 3 2 7 7 C 1.37882 * 120.00073 * 59.99810 * 5 3 2 8 8 N 1.31515 * 119.99928 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99881 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46828 * 90.00484 * 9 7 5 11 11 H 1.48503 * 109.46805 * 210.00097 * 9 7 5 12 12 H 1.48495 * 109.47480 * 330.00105 * 9 7 5 13 13 N 1.46497 * 109.47545 * 65.00513 * 3 2 1 14 14 C 1.34780 * 119.99499 * 274.99983 * 13 3 2 15 15 O 1.21586 * 120.00480 * 359.97438 * 14 13 3 16 16 N 1.34776 * 119.99787 * 179.97438 * 14 13 3 17 17 C 1.39509 * 120.00179 * 179.97438 * 16 14 13 18 18 C 1.36097 * 126.21065 * 0.02562 * 17 16 14 19 19 C 1.39769 * 107.82744 * 179.97438 * 18 17 16 20 20 N 1.30850 * 108.31597 * 359.71814 * 19 18 17 21 21 N 1.35241 * 126.21524 * 180.02562 * 17 16 14 22 22 C 1.46492 * 126.04821 * 0.02562 * 21 17 16 23 23 H 1.09001 * 109.47164 * 0.02562 * 22 21 17 24 24 C 1.52997 * 109.47244 * 120.00234 * 22 21 17 25 25 C 1.53006 * 109.47363 * 240.00462 * 22 21 17 26 26 C 1.52997 * 117.50138 * 128.62330 * 25 22 21 27 27 C 1.52993 * 117.49973 * 59.99793 * 25 22 21 28 28 H 1.09003 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47260 * 299.99911 * 1 2 3 30 30 H 1.09001 * 109.47149 * 59.99627 * 1 2 3 31 31 H 1.08997 * 109.46708 * 240.00024 * 2 1 3 32 32 H 1.08997 * 109.46982 * 119.99638 * 2 1 3 33 33 H 0.96998 * 120.00059 * 179.97438 * 8 7 5 34 34 H 0.96994 * 120.00622 * 94.99755 * 13 3 2 35 35 H 0.97000 * 119.99919 * 359.97438 * 16 14 13 36 36 H 1.08009 * 126.09229 * 359.97438 * 18 17 16 37 37 H 1.07995 * 125.84301 * 180.02562 * 19 18 17 38 38 H 1.09004 * 109.47261 * 180.02562 * 24 22 21 39 39 H 1.09002 * 109.47153 * 300.00242 * 24 22 21 40 40 H 1.09001 * 109.47289 * 60.00326 * 24 22 21 41 41 H 1.09001 * 115.54721 * 274.32924 * 25 22 21 42 42 H 1.09007 * 117.49860 * 359.97438 * 26 25 22 43 43 H 1.08994 * 117.50266 * 145.02232 * 26 25 22 44 44 H 1.09003 * 117.50052 * 214.98523 * 27 25 22 45 45 H 1.09002 * 117.49889 * 0.02562 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3374 -2.1734 9 14 6.0049 0.8813 -1.3818 10 1 6.5548 -0.3502 -0.7603 11 1 6.3828 0.9224 -2.8174 12 1 6.5569 2.0738 -0.6903 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3414 2.6325 0.4318 16 7 0.0784 3.2665 2.5188 17 6 -1.1815 3.8538 2.6378 18 6 -2.1447 3.8921 1.6771 19 6 -3.2475 4.5704 2.2038 20 7 -2.9659 4.9217 3.4324 21 7 -1.6674 4.4882 3.7289 22 6 -0.9628 4.6821 4.9985 23 1 0.0285 4.2333 4.9361 24 6 -0.8273 6.1793 5.2831 25 6 -1.7538 4.0179 6.1274 26 6 -0.9991 3.0573 7.0485 27 6 -1.9984 2.5110 6.0268 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0604 -2.9503 34 1 2.2719 2.1232 1.9977 35 1 0.6977 3.2916 3.2649 36 1 -2.0703 3.4731 0.6844 37 1 -4.1753 4.7662 1.6869 38 1 -0.3026 6.3235 6.2276 39 1 -0.2638 6.6524 4.4789 40 1 -1.8185 6.6285 5.3454 41 1 -2.5411 4.6271 6.5713 42 1 0.0609 2.8981 6.8500 43 1 -1.2897 3.0343 8.0987 44 1 -2.9466 2.1287 6.4049 45 1 -1.5956 1.9927 5.1567 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156967207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:47:29 Heat of formation + Delta-G solvation = 59.376724 kcal Electronic energy + Delta-G solvation = -25819.284663 eV Core-core repulsion = 22260.032691 eV Total energy + Delta-G solvation = -3559.251971 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.53849 -40.89899 -38.74250 -37.29478 -35.80148 -34.35568 -34.31326 -32.72360 -30.61322 -29.78931 -28.64520 -25.27047 -25.07344 -23.53689 -23.30617 -22.91066 -21.58192 -21.26710 -20.75029 -19.56355 -19.02202 -17.74865 -17.22489 -16.85899 -16.58730 -16.26320 -16.00785 -15.57974 -15.34666 -15.11925 -14.79055 -14.54508 -14.11394 -14.01216 -13.61462 -13.54281 -13.28593 -13.15882 -12.89195 -12.88457 -12.65945 -12.48565 -12.26093 -12.17218 -12.08128 -11.95007 -11.64316 -11.50882 -11.37252 -11.19408 -11.05595 -10.88956 -10.51963 -9.90094 -9.73041 -8.94813 -8.14233 -6.31088 0.88266 1.01195 1.47180 1.48288 1.57945 1.90947 1.91665 2.36523 2.43933 2.89095 3.15701 3.27341 3.33798 3.74942 3.81345 4.03415 4.08303 4.19061 4.33180 4.46725 4.52833 4.59939 4.61108 4.72059 4.76523 4.80475 4.84408 4.96021 5.04222 5.08652 5.10033 5.15791 5.18971 5.27293 5.30000 5.46346 5.52698 5.62088 5.72055 5.85681 5.91610 6.03647 6.18681 6.25889 6.75968 6.81481 7.17813 7.36674 7.64750 8.91150 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.018953 B = 0.003477 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.965866 B = 8051.581519 C = 8485.458006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.003 0.997 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.709 5.709 14 C 0.702 3.298 15 O -0.593 6.593 16 N -0.653 5.653 17 C 0.326 3.674 18 C -0.314 4.314 19 C 0.057 3.943 20 N -0.303 5.303 21 N -0.372 5.372 22 C 0.180 3.820 23 H 0.106 0.894 24 C -0.150 4.150 25 C -0.164 4.164 26 C -0.146 4.146 27 C -0.186 4.186 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.027 0.973 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.265 0.735 34 H 0.403 0.597 35 H 0.416 0.584 36 H 0.147 0.853 37 H 0.207 0.793 38 H 0.103 0.897 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.096 0.904 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.373 7.084 18.976 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.194 3.806 4 H 0.021 0.979 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.361 5.361 14 C 0.401 3.599 15 O -0.470 6.470 16 N -0.305 5.305 17 C 0.104 3.896 18 C -0.346 4.346 19 C -0.129 4.129 20 N -0.125 5.125 21 N -0.161 5.161 22 C 0.080 3.920 23 H 0.124 0.876 24 C -0.207 4.207 25 C -0.182 4.182 26 C -0.183 4.183 27 C -0.224 4.224 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.238 0.762 35 H 0.254 0.746 36 H 0.164 0.836 37 H 0.224 0.776 38 H 0.121 0.879 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.132 0.868 42 H 0.127 0.873 43 H 0.134 0.866 44 H 0.114 0.886 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.308 7.519 19.070 21.763 hybrid contribution 1.548 -0.627 -0.852 1.875 sum -5.759 6.892 18.218 20.312 Atomic orbital electron populations 1.21650 0.97040 0.98912 1.00253 1.21812 0.93634 0.99205 1.01378 1.18323 0.93528 0.88809 0.79933 0.97883 1.21544 0.91211 1.39019 1.06761 0.90861 1.25718 1.03085 0.94419 0.95029 1.70043 1.36999 1.38252 1.09834 0.85392 0.79324 0.78814 0.77065 1.19747 1.21486 1.18929 1.45391 1.13454 1.58549 1.18752 1.15841 0.83292 0.78710 0.82023 1.90850 1.52196 1.64632 1.39366 1.41773 1.14097 1.58177 1.16422 1.17726 0.86468 0.95429 0.90010 1.21606 0.94982 1.15480 1.02561 1.24075 0.99992 0.96754 0.92074 1.77282 0.93741 1.24539 1.16892 1.48914 1.11807 1.45067 1.10287 1.21125 0.93707 0.98744 0.78442 0.87621 1.22048 1.03253 0.92119 1.03307 1.22510 1.03524 0.92631 0.99580 1.23162 0.98136 1.00125 0.96883 1.22811 1.01974 0.95709 1.01858 0.93942 0.94077 0.95335 0.90842 0.94015 0.92596 0.76242 0.74610 0.83563 0.77596 0.87880 0.92825 0.91863 0.86778 0.87319 0.86555 0.88598 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 8.51 71.98 0.61 -4.77 16 2 C -0.12 -5.78 5.45 30.59 0.17 -5.61 16 3 C 0.30 14.59 2.24 44.25 0.10 14.69 16 4 H 0.00 0.19 7.58 -2.39 -0.02 0.17 16 5 C -0.55 -27.65 8.73 25.60 0.22 -27.43 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.93 5.29 84.66 0.45 1.38 16 8 N -0.91 -50.83 11.29 21.45 0.24 -50.59 16 9 Si 0.97 40.76 29.54 68.60 2.03 42.79 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 13 N -0.71 -27.43 5.03 -461.41 -2.32 -29.75 16 14 C 0.70 27.01 7.10 179.05 1.27 28.28 16 15 O -0.59 -27.50 10.60 -3.99 -0.04 -27.54 16 16 N -0.65 -19.17 5.42 -322.31 -1.75 -20.91 16 17 C 0.33 10.14 7.66 131.31 1.01 11.15 16 18 C -0.31 -10.87 9.65 22.14 0.21 -10.66 16 19 C 0.06 1.62 12.01 85.21 1.02 2.64 16 20 N -0.30 -8.58 12.42 -57.09 -0.71 -9.29 16 21 N -0.37 -9.63 3.16 -324.46 -1.03 -10.66 16 22 C 0.18 3.24 3.27 44.99 0.15 3.39 16 23 H 0.11 1.53 6.57 -2.39 -0.02 1.51 16 24 C -0.15 -2.28 9.44 71.98 0.68 -1.60 16 25 C -0.16 -2.63 5.29 -10.79 -0.06 -2.69 16 26 C -0.15 -1.74 10.18 30.59 0.31 -1.43 16 27 C -0.19 -3.38 10.12 30.59 0.31 -3.07 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.04 1.78 5.65 -2.38 -0.01 1.77 16 30 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 31 H 0.07 3.94 5.95 -2.39 -0.01 3.93 16 32 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 34 H 0.40 12.71 8.55 -92.71 -0.79 11.92 16 35 H 0.42 8.83 7.54 -92.71 -0.70 8.13 16 36 H 0.15 5.95 5.82 -2.91 -0.02 5.93 16 37 H 0.21 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.11 1.85 8.11 -2.39 -0.02 1.83 16 42 H 0.11 1.05 8.05 -2.38 -0.02 1.03 16 43 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -66.56 364.64 2.40 -64.16 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -0.48 Total: 37.52 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 6.45 Total: 4.27 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -5.56 Total: -121.20 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.04 Total: -27.54 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -66.56 2.40 -64.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156967207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.534 kcal (2) G-P(sol) polarization free energy of solvation -66.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds