Wall clock time and date at job start Fri Apr 10 2020 21:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47339 * 2 1 4 4 N 1.33311 * 126.10792 * 89.97357 * 3 2 1 5 5 C 1.30860 * 109.68557 * 180.02562 * 4 3 2 6 6 N 1.34490 * 109.16472 * 0.26225 * 5 4 3 7 7 H 0.97000 * 126.47810 * 179.71883 * 6 5 4 8 8 C 1.36668 * 126.10341 * 270.01676 * 3 2 1 9 9 C 1.46761 * 126.84459 * 0.02562 * 8 3 2 10 10 O 1.21677 * 120.00287 * 359.97438 * 9 8 3 11 11 N 1.34774 * 119.99928 * 180.02562 * 9 8 3 12 12 C 1.46495 * 120.00261 * 174.98308 * 11 9 8 13 13 C 1.53000 * 109.47191 * 304.29247 * 12 11 9 14 14 C 1.52995 * 109.47287 * 64.29462 * 12 11 9 15 15 N 1.46500 * 109.47300 * 59.99873 * 14 12 11 16 16 C 1.36938 * 120.00142 * 180.02562 * 15 14 12 17 17 H 1.07997 * 119.99905 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99922 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00354 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99675 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47306 * 90.00143 * 20 18 16 22 22 H 1.48507 * 109.47100 * 209.99589 * 20 18 16 23 23 H 1.48501 * 109.47268 * 329.99706 * 20 18 16 24 24 C 1.52999 * 109.47193 * 184.29527 * 12 11 9 25 25 C 1.52997 * 117.50122 * 132.75656 * 24 12 11 26 26 C 1.52995 * 117.50226 * 64.09568 * 24 12 11 27 27 H 1.09004 * 109.47236 * 300.00641 * 1 2 3 28 28 H 1.09007 * 109.47184 * 59.99806 * 1 2 3 29 29 H 1.09001 * 109.47555 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47146 * 239.99889 * 2 1 3 31 31 H 1.08999 * 109.47188 * 119.99837 * 2 1 3 32 32 H 1.08002 * 125.41936 * 180.02562 * 5 4 3 33 33 H 0.97011 * 119.99763 * 354.97739 * 11 9 8 34 34 H 1.09004 * 109.46977 * 59.99806 * 13 12 11 35 35 H 1.09000 * 109.47395 * 179.97438 * 13 12 11 36 36 H 1.08998 * 109.47222 * 300.00100 * 13 12 11 37 37 H 1.09000 * 109.47446 * 180.02562 * 14 12 11 38 38 H 1.09006 * 109.47264 * 299.99966 * 14 12 11 39 39 H 0.96997 * 120.00347 * 0.02562 * 15 14 12 40 40 H 0.96996 * 120.00113 * 179.97438 * 19 18 16 41 41 H 1.09008 * 115.54769 * 278.42216 * 24 12 11 42 42 H 1.09000 * 117.50172 * 359.97438 * 25 24 12 43 43 H 1.09000 * 117.50098 * 145.01502 * 25 24 12 44 44 H 1.09002 * 117.50149 * 214.97911 * 26 24 12 45 45 H 1.09006 * 117.49724 * 359.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2938 2.1617 1.0770 5 6 2.7119 3.3452 0.7071 6 7 2.7281 3.4077 -0.6363 7 1 2.9920 4.1700 -1.1750 8 6 2.3005 2.1802 -1.1042 9 6 2.1562 1.7747 -2.5073 10 8 1.7608 0.6568 -2.7800 11 7 2.4626 2.6404 -3.4938 12 6 2.4243 2.2021 -4.8911 13 6 3.3298 0.9815 -5.0678 14 6 0.9891 1.8315 -5.2703 15 7 0.1221 3.0002 -5.1011 16 6 -1.2150 2.9071 -5.3817 17 1 -1.6303 1.9723 -5.7280 18 6 -2.0364 4.0147 -5.2220 19 7 -1.5303 5.1541 -4.8004 20 14 -3.8603 3.8878 -5.6054 21 1 -4.5958 3.4762 -4.3827 22 1 -4.3626 5.2078 -6.0643 23 1 -4.0725 2.8787 -6.6740 24 6 2.9140 3.3354 -5.7948 25 6 3.9439 2.9860 -6.8710 26 6 4.3674 3.7868 -5.6371 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.9949 4.1459 1.3743 33 1 2.7084 3.5538 -3.2786 34 1 2.9809 0.1741 -4.4239 35 1 3.3010 0.6550 -6.1073 36 1 4.3522 1.2455 -4.7977 37 1 0.9607 1.5049 -6.3098 38 1 0.6402 1.0240 -4.6265 39 1 0.4950 3.8400 -4.7904 40 1 -2.1042 5.9281 -4.6891 41 1 2.1734 4.0981 -6.0356 42 1 4.2729 1.9488 -6.9350 43 1 3.8810 3.5190 -7.8197 44 1 4.5830 4.8464 -5.7746 45 1 4.9745 3.2766 -4.8893 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753528437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:46:09 Heat of formation + Delta-G solvation = 56.478323 kcal Electronic energy + Delta-G solvation = -26449.682477 eV Core-core repulsion = 22890.304822 eV Total energy + Delta-G solvation = -3559.377656 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.15735 -39.92082 -37.67861 -34.79361 -34.21534 -33.32100 -32.10010 -31.08551 -29.81544 -28.63608 -25.92576 -24.32767 -23.40922 -22.62114 -22.34983 -22.11033 -21.08710 -19.42749 -18.77713 -18.54388 -17.18165 -16.47708 -15.64867 -15.44348 -15.24992 -14.71761 -14.49508 -14.28635 -14.03099 -13.71989 -13.64118 -13.24794 -13.16607 -12.74629 -12.38201 -12.16382 -12.11224 -11.97429 -11.43793 -11.23773 -11.13125 -10.92487 -10.80773 -10.77159 -10.70166 -10.25003 -10.22399 -10.10108 -9.95879 -9.88056 -9.67945 -9.39558 -8.80531 -8.72787 -8.35245 -6.85487 -5.75406 -3.01082 1.44539 2.91788 2.95158 3.26170 3.45263 3.50746 3.51783 3.59675 4.03697 4.46785 4.61573 4.71943 4.91404 5.02506 5.08718 5.11883 5.22855 5.32243 5.42214 5.60763 5.62218 5.69883 5.71579 5.76878 5.78928 5.87330 5.91527 5.99938 6.16655 6.19840 6.21741 6.23673 6.40408 6.42989 6.51020 6.57816 6.64313 6.69208 6.88004 7.07276 7.22455 7.73085 7.75512 7.99809 8.44388 8.48918 9.56020 10.13572 10.49084 11.47987 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.009661 B = 0.005856 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.520655 B = 4780.571733 C = 6349.289070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.045 4.045 3 C 0.094 3.906 4 N -0.500 5.500 5 C 0.210 3.790 6 N -0.553 5.553 7 H 0.422 0.578 8 C -0.079 4.079 9 C 0.601 3.399 10 O -0.515 6.515 11 N -0.708 5.708 12 C 0.204 3.796 13 C -0.165 4.165 14 C 0.144 3.856 15 N -0.725 5.725 16 C -0.228 4.228 17 H 0.069 0.931 18 C -0.016 4.016 19 N -0.938 5.938 20 Si 0.905 3.095 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.282 1.282 24 C -0.151 4.151 25 C -0.170 4.170 26 C -0.185 4.185 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.212 0.788 33 H 0.390 0.610 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.024 0.976 38 H 0.047 0.953 39 H 0.380 0.620 40 H 0.252 0.748 41 H 0.122 0.878 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.965 -3.055 5.547 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 C -0.040 4.040 4 N -0.220 5.220 5 C -0.074 4.074 6 N -0.158 5.158 7 H 0.260 0.740 8 C -0.195 4.195 9 C 0.387 3.613 10 O -0.390 6.390 11 N -0.358 5.358 12 C 0.119 3.881 13 C -0.223 4.223 14 C 0.016 3.984 15 N -0.369 5.369 16 C -0.360 4.360 17 H 0.087 0.913 18 C -0.212 4.212 19 N -0.588 5.588 20 Si 0.736 3.264 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.170 4.170 25 C -0.208 4.208 26 C -0.222 4.222 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.229 0.771 33 H 0.223 0.777 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.065 0.935 39 H 0.214 0.786 40 H 0.062 0.938 41 H 0.140 0.860 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.423 -4.241 6.057 16.208 hybrid contribution -0.628 1.883 -0.995 2.221 sum 13.794 -2.358 5.062 14.882 Atomic orbital electron populations 1.21624 0.94279 1.01601 1.02209 1.20018 0.96336 0.88733 1.03231 1.21005 0.99210 0.97198 0.86626 1.70083 1.18458 1.02807 1.30617 1.25042 1.02226 0.97941 0.82148 1.43327 1.50520 1.13172 1.08752 0.73964 1.21126 1.15077 0.87815 0.95508 1.16661 0.77277 0.85141 0.82215 1.90749 1.45328 1.20536 1.82437 1.45809 1.70205 1.13620 1.06153 1.20046 0.96887 0.92429 0.78737 1.22294 0.98371 0.98797 1.02816 1.21079 0.87164 0.92210 0.97970 1.42212 1.05175 1.08829 1.80717 1.19241 0.84596 0.96099 1.36027 0.91298 1.24666 0.97947 0.95873 1.02672 1.69637 1.34463 1.01004 1.53681 0.86209 0.85688 0.76574 0.77896 1.21848 1.21910 1.20783 1.22585 0.92213 1.01091 1.01084 1.23056 1.02962 1.01290 0.93453 1.22952 0.97883 1.00271 1.01068 0.93141 0.91965 0.92407 0.88847 0.91139 0.77131 0.77655 0.89967 0.91418 0.93025 0.95786 0.93546 0.78616 0.93779 0.85960 0.88178 0.88820 0.88968 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.89 37.16 0.37 -1.73 16 2 C -0.04 -0.66 5.93 -27.88 -0.17 -0.83 16 3 C 0.09 1.48 6.40 -82.52 -0.53 0.95 16 4 N -0.50 -7.36 11.20 -10.64 -0.12 -7.48 16 5 C 0.21 2.34 13.01 -90.58 -1.18 1.16 16 6 N -0.55 -6.27 6.08 -10.79 -0.07 -6.33 16 7 H 0.42 3.47 8.33 -40.82 -0.34 3.13 16 8 C -0.08 -1.21 7.08 -82.14 -0.58 -1.79 16 9 C 0.60 10.10 7.20 -12.82 -0.09 10.01 16 10 O -0.51 -9.83 11.05 5.21 0.06 -9.77 16 11 N -0.71 -10.70 4.72 -48.88 -0.23 -10.93 16 12 C 0.20 3.24 0.54 -131.82 -0.07 3.17 16 13 C -0.16 -2.30 6.98 37.16 0.26 -2.04 16 14 C 0.14 3.00 5.03 -4.04 -0.02 2.98 16 15 N -0.73 -18.02 5.04 -59.91 -0.30 -18.32 16 16 C -0.23 -6.45 9.99 -15.06 -0.15 -6.60 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 19 N -0.94 -27.99 13.06 55.49 0.72 -27.26 16 20 Si 0.90 22.85 29.55 -169.99 -5.02 17.83 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 C -0.15 -2.19 4.84 -90.62 -0.44 -2.62 16 25 C -0.17 -2.03 9.64 -26.70 -0.26 -2.29 16 26 C -0.18 -2.07 9.82 -26.70 -0.26 -2.33 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.44 6.48 -51.93 -0.34 1.10 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.21 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.39 5.12 7.73 -40.82 -0.32 4.81 16 34 H 0.08 1.30 6.03 -51.93 -0.31 0.99 16 35 H 0.07 0.87 6.78 -51.93 -0.35 0.52 16 36 H 0.05 0.64 6.99 -51.93 -0.36 0.27 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 1.08 6.32 -51.93 -0.33 0.75 16 39 H 0.38 9.67 6.62 -40.82 -0.27 9.40 16 40 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.12 2.15 7.08 -51.92 -0.37 1.78 16 42 H 0.10 1.11 5.88 -51.93 -0.31 0.80 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 0.94 7.35 -51.93 -0.38 0.56 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -33.95 360.64 -9.34 -43.29 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -6.60 Total: 16.10 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -3.21 Total: -2.55 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: 0.01 Total: -70.33 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.06 Total: -9.77 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.95 -9.34 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753528437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.765 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds