Wall clock time and date at job start Fri Apr 10 2020 21:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50710 * 109.46890 * 2 1 4 4 C 1.34658 * 126.58825 * 84.98115 * 3 2 1 5 5 N 1.34126 * 108.02168 * 180.02562 * 4 3 2 6 6 C 1.30504 * 109.25477 * 359.97438 * 5 4 3 7 7 C 1.50695 * 125.65283 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47103 * 305.02864 * 7 6 5 9 9 O 1.21277 * 119.99813 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99761 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99584 * 179.97438 * 10 8 7 12 12 H 1.08990 * 109.47645 * 325.00135 * 11 10 8 13 13 C 1.52996 * 109.46882 * 85.00727 * 11 10 8 14 14 C 1.53000 * 109.46960 * 204.99961 * 11 10 8 15 15 C 1.53497 * 114.20787 * 180.02562 * 14 11 10 16 16 N 1.47062 * 87.98453 * 87.71861 * 15 14 11 17 17 C 1.36943 * 136.05579 * 207.08745 * 16 15 14 18 18 H 1.08002 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99622 * 180.27778 * 17 16 15 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48501 * 109.46896 * 89.99850 * 21 19 17 23 23 H 1.48499 * 109.47039 * 210.00011 * 21 19 17 24 24 H 1.48501 * 109.47275 * 329.99811 * 21 19 17 25 25 C 1.47067 * 87.88602 * 27.34481 * 16 15 14 26 26 N 1.35045 * 108.69921 * 0.26310 * 6 5 4 27 27 H 0.96996 * 126.40264 * 179.73716 * 26 6 5 28 28 H 1.08993 * 109.47484 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46950 * 300.00204 * 1 2 3 30 30 H 1.09005 * 109.47039 * 59.99324 * 1 2 3 31 31 H 1.09000 * 109.46902 * 240.00323 * 2 1 3 32 32 H 1.08995 * 109.46829 * 120.00208 * 2 1 3 33 33 H 1.08003 * 125.99481 * 359.97438 * 4 3 2 34 34 H 1.08999 * 109.47359 * 185.02793 * 7 6 5 35 35 H 1.09001 * 109.47133 * 65.02481 * 7 6 5 36 36 H 0.96997 * 120.00244 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.47848 * 59.99342 * 13 11 10 38 38 H 1.09003 * 109.47365 * 179.97438 * 13 11 10 39 39 H 1.09010 * 109.47036 * 299.99304 * 13 11 10 40 40 H 1.09001 * 113.28445 * 46.93871 * 14 11 10 41 41 H 1.09000 * 113.46436 * 332.93489 * 15 14 11 42 42 H 1.08997 * 113.51966 * 202.51274 * 15 14 11 43 43 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 44 44 H 1.08994 * 113.46653 * 87.43736 * 25 16 15 45 45 H 1.08996 * 113.46465 * 217.87717 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2107 2.2092 1.0771 5 7 2.6691 3.3957 0.6516 6 6 2.7822 3.3724 -0.6483 7 6 3.2640 4.5119 -1.5087 8 6 2.4317 5.7373 -1.2317 9 8 1.5352 5.6897 -0.4164 10 7 2.6837 6.8859 -1.8902 11 6 1.8742 8.0770 -1.6214 12 1 0.8464 7.7788 -1.4146 13 6 2.4438 8.8180 -0.4101 14 6 1.9019 8.9987 -2.8423 15 6 1.0843 10.2873 -2.6768 16 7 2.2798 10.9085 -2.0872 17 6 2.5286 11.9179 -1.1958 18 1 1.7074 12.4621 -0.7534 19 6 3.8365 12.2456 -0.8659 20 7 4.8373 11.5827 -1.4055 21 14 4.1761 13.6276 0.3442 22 1 4.2290 13.0770 1.7223 23 1 5.4765 14.2650 0.0154 24 1 3.0928 14.6396 0.2566 25 6 3.0907 9.9730 -2.8811 26 7 2.3897 2.1600 -1.0954 27 1 2.3673 1.8669 -2.0197 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.0176 1.9346 2.1036 34 1 3.1699 4.2387 -2.5597 35 1 4.3087 4.7231 -1.2803 36 1 3.4010 6.9240 -2.5421 37 1 3.4716 9.1162 -0.6168 38 1 1.8418 9.7045 -0.2102 39 1 2.4240 8.1613 0.4598 40 1 1.7256 8.4748 -3.7817 41 1 0.2557 10.1885 -1.9756 42 1 0.7838 10.7363 -3.6235 43 1 5.7512 11.8115 -1.1746 44 1 3.3197 10.3387 -3.8820 45 1 3.9715 9.6067 -2.3538 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755379602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:46:52 Heat of formation + Delta-G solvation = 77.174527 kcal Electronic energy + Delta-G solvation = -25067.647634 eV Core-core repulsion = 21509.167434 eV Total energy + Delta-G solvation = -3558.480201 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.19059 -39.64725 -38.30452 -34.49252 -34.20688 -32.56756 -32.16720 -31.48490 -29.35107 -27.63923 -26.99219 -24.67279 -24.11049 -23.56129 -21.90913 -21.06523 -20.71064 -19.80744 -18.51984 -17.48305 -16.84216 -16.62326 -15.62211 -15.47163 -14.86520 -14.77882 -14.70892 -14.48227 -14.13903 -13.77251 -13.72081 -13.32899 -13.09922 -12.68530 -12.57574 -12.42393 -12.00859 -11.90728 -11.64682 -11.50509 -11.11943 -10.98788 -10.92517 -10.73266 -10.52512 -10.25623 -10.00154 -9.87044 -9.84313 -9.66704 -9.52356 -9.12012 -8.71546 -8.53463 -8.27884 -6.79848 -5.75017 -3.06012 1.89183 2.83071 2.97084 3.12894 3.41994 3.47280 3.48192 3.66498 4.26162 4.48781 4.55235 4.65031 4.84412 4.97470 5.05635 5.23399 5.28094 5.32056 5.35193 5.36395 5.42984 5.48430 5.52479 5.62977 5.70530 5.86765 6.01285 6.15697 6.17569 6.36759 6.49176 6.55903 6.67141 6.71643 6.78781 6.90558 7.10933 7.24827 7.28359 7.32323 7.54351 7.68503 7.91725 8.00129 8.12979 8.60368 9.06499 9.73130 10.66808 11.42338 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.027340 B = 0.002686 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.878698 B =10420.084674 C =10791.491334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.044 4.044 3 C -0.029 4.029 4 C -0.020 4.020 5 N -0.455 5.455 6 C 0.223 3.777 7 C -0.057 4.057 8 C 0.515 3.485 9 O -0.520 6.520 10 N -0.720 5.720 11 C 0.178 3.822 12 H 0.074 0.926 13 C -0.147 4.147 14 C -0.160 4.160 15 C 0.126 3.874 16 N -0.604 5.604 17 C -0.212 4.212 18 H 0.079 0.921 19 C -0.005 4.005 20 N -0.919 5.919 21 Si 0.908 3.092 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.158 3.842 26 N -0.564 5.564 27 H 0.414 0.586 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.166 0.834 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.397 0.603 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.029 0.971 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.034 0.966 43 H 0.252 0.748 44 H 0.022 0.978 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 -22.900 -4.184 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.169 4.169 5 N -0.173 5.173 6 C -0.041 4.041 7 C -0.099 4.099 8 C 0.298 3.702 9 O -0.395 6.395 10 N -0.371 5.371 11 C 0.075 3.925 12 H 0.092 0.908 13 C -0.205 4.205 14 C -0.180 4.180 15 C -0.001 4.001 16 N -0.330 5.330 17 C -0.340 4.340 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.566 5.566 21 Si 0.738 3.262 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.208 1.208 25 C 0.032 3.968 26 N -0.168 5.168 27 H 0.251 0.749 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.184 0.816 34 H 0.122 0.878 35 H 0.137 0.863 36 H 0.231 0.769 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.039 0.961 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.174 -21.990 -2.799 22.557 hybrid contribution 0.441 0.125 -0.867 0.980 sum -3.733 -21.866 -3.666 22.483 Atomic orbital electron populations 1.21785 0.94479 1.01729 1.02650 1.19953 0.96017 0.89155 1.03155 1.21191 1.09368 0.96502 0.87387 1.22114 1.06057 0.90139 0.98608 1.70281 1.17269 1.21635 1.08157 1.22288 1.04119 0.86528 0.91134 1.19973 1.01699 0.89740 0.98455 1.19968 0.84716 0.83922 0.81567 1.90755 1.31561 1.84411 1.32771 1.46093 1.36985 1.10699 1.43349 1.20528 0.94339 0.82618 0.95030 0.90811 1.22151 1.04236 0.99457 0.94647 1.23373 1.02880 0.95471 0.96289 1.22342 0.92032 0.89687 0.96039 1.45645 1.01258 1.39845 1.46282 1.18857 0.91987 1.08220 1.14887 0.90309 1.24714 0.95361 0.99734 1.00353 1.69794 0.98023 1.42546 1.46212 0.86187 0.77306 0.81708 0.80988 1.21483 1.21767 1.20805 1.22203 0.94259 0.86489 0.93838 1.43077 1.51685 1.12600 1.09439 0.74870 0.92150 0.91943 0.92884 0.91469 0.89552 0.81645 0.87825 0.86300 0.76931 0.90555 0.89824 0.95227 0.91401 0.94082 0.94866 0.93767 0.96072 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.04 -0.29 6.49 -27.88 -0.18 -0.47 16 3 C -0.03 -0.30 6.49 -81.60 -0.53 -0.83 16 4 C -0.02 -0.27 11.79 -17.82 -0.21 -0.48 16 5 N -0.46 -7.40 10.58 -10.82 -0.11 -7.52 16 6 C 0.22 2.92 6.96 -155.41 -1.08 1.84 16 7 C -0.06 -0.61 6.33 -29.04 -0.18 -0.80 16 8 C 0.51 7.94 7.78 -10.98 -0.09 7.86 16 9 O -0.52 -10.49 15.21 5.56 0.08 -10.41 16 10 N -0.72 -10.65 5.08 -53.81 -0.27 -10.92 16 11 C 0.18 3.21 2.76 -67.93 -0.19 3.02 16 12 H 0.07 1.40 7.58 -51.93 -0.39 1.01 16 13 C -0.15 -3.16 8.07 37.16 0.30 -2.86 16 14 C -0.16 -2.84 4.24 -89.97 -0.38 -3.22 16 15 C 0.13 2.51 7.85 -8.51 -0.07 2.45 16 16 N -0.60 -14.73 2.18 -184.61 -0.40 -15.13 16 17 C -0.21 -5.75 9.60 -15.06 -0.14 -5.90 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 20 N -0.92 -26.24 11.50 55.49 0.64 -25.60 16 21 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.16 3.46 6.41 -8.37 -0.05 3.40 16 26 N -0.56 -5.53 6.15 -6.54 -0.04 -5.57 16 27 H 0.41 2.55 8.96 -40.82 -0.37 2.18 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.17 1.83 8.06 -52.48 -0.42 1.41 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.40 4.80 8.60 -40.82 -0.35 4.45 16 37 H 0.08 1.83 6.33 -51.93 -0.33 1.50 16 38 H 0.08 1.98 5.95 -51.93 -0.31 1.67 16 39 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 1.85 5.72 -51.93 -0.30 1.55 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -35.43 366.77 -9.22 -44.65 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.09 Total: 4.76 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -2.53 Total: 3.17 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -0.19 Total: -64.75 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.43 -9.22 -44.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755379602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.827 kcal (2) G-P(sol) polarization free energy of solvation -35.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds