Wall clock time and date at job start Fri Apr 10 2020 21:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 110.88448 * 2 1 4 4 C 1.54910 * 111.00282 * 123.92605 * 2 1 3 5 5 N 1.47425 * 104.83231 * 155.08241 * 4 2 1 6 6 C 1.34771 * 125.64767 * 156.13676 * 5 4 2 7 7 O 1.21280 * 119.99952 * 359.71588 * 6 5 4 8 8 C 1.50705 * 119.99988 * 179.71693 * 6 5 4 9 9 C 1.52997 * 109.46810 * 179.97438 * 8 6 5 10 10 C 1.50705 * 109.46808 * 179.97438 * 9 8 6 11 11 C 1.39872 * 125.89638 * 124.71264 * 10 9 8 12 12 C 1.35316 * 107.92112 * 179.86758 * 11 10 9 13 13 N 1.34949 * 107.74184 * 0.39789 * 12 11 10 14 14 C 1.46501 * 126.03157 * 179.75306 * 13 12 11 15 15 N 1.30838 * 125.90046 * 305.02933 * 10 9 8 16 16 C 1.47026 * 108.70074 * 335.87083 * 5 4 2 17 17 C 1.54316 * 107.27365 * 1.05989 * 16 5 4 18 18 H 1.09002 * 110.72355 * 263.82891 * 17 16 5 19 19 N 1.46497 * 110.72365 * 140.73242 * 17 16 5 20 20 C 1.36938 * 120.00007 * 86.44885 * 19 17 16 21 21 H 1.07998 * 120.00064 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00313 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99799 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00341 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46743 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47049 * 120.00346 * 24 22 20 27 27 H 1.48501 * 109.46964 * 240.00233 * 24 22 20 28 28 H 1.08997 * 109.47161 * 183.87636 * 1 2 3 29 29 H 1.08991 * 109.46994 * 303.87731 * 1 2 3 30 30 H 1.08999 * 109.47006 * 63.87919 * 1 2 3 31 31 H 1.09001 * 110.36852 * 36.24540 * 4 2 1 32 32 H 1.08998 * 110.36449 * 273.92188 * 4 2 1 33 33 H 1.08993 * 109.46871 * 299.99760 * 8 6 5 34 34 H 1.09000 * 109.46865 * 59.99842 * 8 6 5 35 35 H 1.08993 * 109.47368 * 299.99652 * 9 8 6 36 36 H 1.09000 * 109.47375 * 60.00351 * 9 8 6 37 37 H 1.08009 * 126.03771 * 359.97438 * 11 10 9 38 38 H 1.08000 * 126.12593 * 180.15253 * 12 11 10 39 39 H 1.09004 * 109.46851 * 269.97021 * 14 13 12 40 40 H 1.08996 * 109.47836 * 29.97151 * 14 13 12 41 41 H 1.09003 * 109.46706 * 149.97834 * 14 13 12 42 42 H 1.09004 * 109.87531 * 120.47707 * 16 5 4 43 43 H 1.09000 * 109.87938 * 241.63960 * 16 5 4 44 44 H 0.96996 * 120.00023 * 266.45724 * 19 17 16 45 45 H 0.96999 * 120.00619 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8071 1.2000 5 7 3.4272 -1.2435 0.7728 6 6 4.4463 -1.5665 1.5934 7 8 4.2996 -1.5049 2.7957 8 6 5.7682 -2.0042 1.0170 9 6 6.7447 -2.3091 2.1547 10 6 8.0663 -2.7474 1.5783 11 6 9.3113 -2.1705 1.8500 12 6 10.2467 -2.8473 1.1442 13 7 9.6149 -3.8123 0.4437 14 6 10.2482 -4.7763 -0.4595 15 7 8.2467 -3.7295 0.7328 16 6 3.4674 -1.2739 -0.6966 17 6 2.0862 -0.8075 -1.2026 18 1 1.4468 -1.6626 -1.4217 19 7 2.2284 0.0471 -2.3840 20 6 2.3015 -0.5148 -3.6306 21 1 2.2538 -1.5879 -3.7430 22 6 2.4368 0.2948 -4.7500 23 7 2.4954 1.6026 -4.6131 24 14 2.5357 -0.4716 -6.4507 25 1 2.4465 -1.9492 -6.3336 26 1 1.4126 0.0272 -7.2844 27 1 3.8260 -0.1018 -7.0859 28 1 -0.3633 -1.0253 0.0695 29 1 -0.3633 0.5728 0.8531 30 1 -0.3633 0.4524 -0.9227 31 1 1.4519 -1.6710 1.4018 32 1 2.1560 -0.1729 2.0836 33 1 5.6224 -2.8997 0.4130 34 1 6.1743 -1.2076 0.3937 35 1 6.8903 -1.4133 2.7583 36 1 6.3387 -3.1055 2.7784 37 1 9.4939 -1.3340 2.5083 38 1 11.3081 -2.6480 1.1392 39 1 10.2786 -4.3636 -1.4680 40 1 11.2636 -4.9801 -0.1196 41 1 9.6734 -5.7025 -0.4632 42 1 4.2427 -0.5993 -1.0601 43 1 3.6650 -2.2890 -1.0410 44 1 2.2710 1.0108 -2.2831 45 1 2.5903 2.1684 -5.3952 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054716153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:47:31 Heat of formation + Delta-G solvation = 48.811111 kcal Electronic energy + Delta-G solvation = -24740.611909 eV Core-core repulsion = 21180.901778 eV Total energy + Delta-G solvation = -3559.710131 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28446 -39.77106 -37.61109 -34.61571 -34.04445 -32.58526 -31.80598 -30.69951 -30.08124 -27.64252 -27.38679 -26.01697 -24.16664 -23.61364 -21.47046 -21.24067 -19.94165 -19.65525 -18.74349 -17.24302 -17.12530 -16.57567 -16.05584 -15.60470 -15.31607 -14.97410 -14.33666 -14.09722 -13.88462 -13.66545 -13.51034 -13.18651 -13.04086 -12.84753 -12.77954 -12.59218 -12.32119 -12.20686 -12.01115 -11.81588 -11.50529 -11.21227 -11.14431 -10.99820 -10.73892 -10.60472 -10.56297 -10.23136 -9.94574 -9.78432 -9.61340 -9.29758 -9.00933 -8.68235 -8.26889 -7.09787 -5.85976 -3.16635 1.75550 2.37269 2.66909 2.91388 3.33173 3.38200 3.44657 3.46276 4.30612 4.50272 4.57944 4.68868 4.88218 4.92525 5.04547 5.11985 5.15607 5.17797 5.21989 5.28743 5.49428 5.56652 5.65311 5.65679 5.70335 5.80044 5.83939 5.86167 5.93933 6.02345 6.08821 6.10341 6.22639 6.28076 6.41440 6.51039 6.56180 6.59500 6.65270 6.86017 6.89356 7.62183 7.63219 7.86975 8.31356 8.43891 9.43695 9.97785 10.32784 11.36051 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.010524 B = 0.003583 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.978758 B = 7813.852286 C =10009.030571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.083 0.917 4 C 0.114 3.886 5 N -0.613 5.613 6 C 0.528 3.472 7 O -0.558 6.558 8 C -0.129 4.129 9 C -0.020 4.020 10 C 0.078 3.922 11 C -0.268 4.268 12 C 0.050 3.950 13 N -0.380 5.380 14 C 0.102 3.898 15 N -0.292 5.292 16 C 0.072 3.928 17 C 0.177 3.823 18 H 0.066 0.934 19 N -0.712 5.712 20 C -0.247 4.247 21 H 0.073 0.927 22 C -0.008 4.008 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.148 0.852 38 H 0.172 0.828 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.851 -8.725 11.754 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.102 0.898 4 C -0.009 4.009 5 N -0.346 5.346 6 C 0.317 3.683 7 O -0.437 6.437 8 C -0.169 4.169 9 C -0.060 4.060 10 C -0.088 4.088 11 C -0.297 4.297 12 C -0.096 4.096 13 N -0.162 5.162 14 C -0.040 4.040 15 N -0.115 5.115 16 C -0.054 4.054 17 C 0.065 3.935 18 H 0.083 0.917 19 N -0.352 5.352 20 C -0.378 4.378 21 H 0.091 0.909 22 C -0.205 4.205 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.165 0.835 38 H 0.190 0.810 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.221 0.779 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.372 -9.850 11.448 18.905 hybrid contribution 0.811 0.570 -0.766 1.253 sum 12.183 -9.280 10.682 18.672 Atomic orbital electron populations 1.21610 0.93904 1.01534 1.02063 1.22619 0.96288 0.99796 0.94653 0.89842 1.22244 0.82973 0.98018 0.97694 1.48561 1.12119 1.65809 1.08154 1.20292 0.85002 0.76913 0.86084 1.90655 1.83451 1.54922 1.14703 1.21553 0.92290 1.03777 0.99315 1.19746 0.87442 1.02504 0.96272 1.22363 0.96422 0.94074 0.95978 1.21449 0.91611 1.06852 1.09792 1.22515 0.99368 0.91787 0.95892 1.48522 1.05183 1.26592 1.35875 1.21841 0.97528 0.92008 0.92574 1.77344 0.92761 1.21804 1.19543 1.23335 1.03266 1.01274 0.77475 1.21243 0.91603 0.93826 0.86869 0.91657 1.42361 1.86962 1.05335 1.00536 1.19289 1.42926 0.91951 0.83597 0.90927 1.24754 1.02412 0.95350 0.97955 1.69668 1.56617 1.02368 1.29008 0.86135 0.77255 0.78276 0.84613 1.20459 1.21780 1.21826 0.92856 0.93169 0.91362 0.91758 0.90983 0.88474 0.88783 0.89189 0.89539 0.83454 0.81044 0.90680 0.89645 0.89325 0.90804 0.92257 0.77875 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.31 37.16 0.35 -1.54 16 2 C -0.11 -1.81 3.26 -88.46 -0.29 -2.10 16 3 H 0.08 1.41 8.01 -51.93 -0.42 0.99 16 4 C 0.11 1.73 6.37 -2.53 -0.02 1.72 16 5 N -0.61 -10.06 3.33 -170.52 -0.57 -10.63 16 6 C 0.53 8.68 7.85 -10.99 -0.09 8.59 16 7 O -0.56 -10.42 16.24 5.56 0.09 -10.33 16 8 C -0.13 -1.80 4.85 -27.88 -0.14 -1.94 16 9 C -0.02 -0.26 5.08 -27.88 -0.14 -0.40 16 10 C 0.08 1.02 6.49 -82.40 -0.53 0.49 16 11 C -0.27 -2.97 10.72 -40.01 -0.43 -3.40 16 12 C 0.05 0.48 11.49 -17.22 -0.20 0.28 16 13 N -0.38 -4.15 4.01 -68.16 -0.27 -4.42 16 14 C 0.10 0.67 11.47 59.85 0.69 1.36 16 15 N -0.29 -4.08 12.54 33.67 0.42 -3.66 16 16 C 0.07 1.26 6.24 -3.07 -0.02 1.24 16 17 C 0.18 3.30 3.05 -66.10 -0.20 3.10 16 18 H 0.07 1.23 8.02 -51.93 -0.42 0.82 16 19 N -0.71 -16.69 5.18 -51.66 -0.27 -16.96 16 20 C -0.25 -6.47 9.98 -15.06 -0.15 -6.62 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 24 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 32 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 33 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 37 H 0.15 1.34 8.06 -52.48 -0.42 0.91 16 38 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.39 9.74 7.73 -40.82 -0.32 9.42 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -32.79 376.34 -7.92 -40.71 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -7.43 Total: 8.84 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.26 Total: 0.46 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.04 Total: -61.96 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.79 -7.92 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054716153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.517 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds