Wall clock time and date at job start Fri Apr 10 2020 21:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 110.88448 * 2 1 4 4 C 1.54910 * 111.00282 * 123.92605 * 2 1 3 5 5 N 1.47425 * 104.83231 * 155.08241 * 4 2 1 6 6 C 1.34771 * 125.64767 * 156.13676 * 5 4 2 7 7 O 1.21280 * 119.99952 * 359.71588 * 6 5 4 8 8 C 1.50705 * 119.99988 * 179.71693 * 6 5 4 9 9 C 1.52997 * 109.46810 * 179.97438 * 8 6 5 10 10 C 1.50705 * 109.46808 * 179.97438 * 9 8 6 11 11 C 1.39872 * 125.89638 * 124.71264 * 10 9 8 12 12 C 1.35316 * 107.92112 * 179.86758 * 11 10 9 13 13 N 1.34949 * 107.74184 * 0.39789 * 12 11 10 14 14 C 1.46501 * 126.03157 * 179.75306 * 13 12 11 15 15 N 1.30838 * 125.90046 * 305.02933 * 10 9 8 16 16 C 1.47026 * 108.70074 * 335.87083 * 5 4 2 17 17 C 1.54316 * 107.27365 * 1.05989 * 16 5 4 18 18 H 1.09002 * 110.72355 * 263.82891 * 17 16 5 19 19 N 1.46497 * 110.72365 * 140.73242 * 17 16 5 20 20 C 1.36938 * 120.00007 * 86.44885 * 19 17 16 21 21 H 1.07998 * 120.00064 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00313 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99799 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00341 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46743 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47049 * 120.00346 * 24 22 20 27 27 H 1.48501 * 109.46964 * 240.00233 * 24 22 20 28 28 H 1.08997 * 109.47161 * 183.87636 * 1 2 3 29 29 H 1.08991 * 109.46994 * 303.87731 * 1 2 3 30 30 H 1.08999 * 109.47006 * 63.87919 * 1 2 3 31 31 H 1.09001 * 110.36852 * 36.24540 * 4 2 1 32 32 H 1.08998 * 110.36449 * 273.92188 * 4 2 1 33 33 H 1.08993 * 109.46871 * 299.99760 * 8 6 5 34 34 H 1.09000 * 109.46865 * 59.99842 * 8 6 5 35 35 H 1.08993 * 109.47368 * 299.99652 * 9 8 6 36 36 H 1.09000 * 109.47375 * 60.00351 * 9 8 6 37 37 H 1.08009 * 126.03771 * 359.97438 * 11 10 9 38 38 H 1.08000 * 126.12593 * 180.15253 * 12 11 10 39 39 H 1.09004 * 109.46851 * 269.97021 * 14 13 12 40 40 H 1.08996 * 109.47836 * 29.97151 * 14 13 12 41 41 H 1.09003 * 109.46706 * 149.97834 * 14 13 12 42 42 H 1.09004 * 109.87531 * 120.47707 * 16 5 4 43 43 H 1.09000 * 109.87938 * 241.63960 * 16 5 4 44 44 H 0.96996 * 120.00023 * 266.45724 * 19 17 16 45 45 H 0.96999 * 120.00619 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8071 1.2000 5 7 3.4272 -1.2435 0.7728 6 6 4.4463 -1.5665 1.5934 7 8 4.2996 -1.5049 2.7957 8 6 5.7682 -2.0042 1.0170 9 6 6.7447 -2.3091 2.1547 10 6 8.0663 -2.7474 1.5783 11 6 9.3113 -2.1705 1.8500 12 6 10.2467 -2.8473 1.1442 13 7 9.6149 -3.8123 0.4437 14 6 10.2482 -4.7763 -0.4595 15 7 8.2467 -3.7295 0.7328 16 6 3.4674 -1.2739 -0.6966 17 6 2.0862 -0.8075 -1.2026 18 1 1.4468 -1.6626 -1.4217 19 7 2.2284 0.0471 -2.3840 20 6 2.3015 -0.5148 -3.6306 21 1 2.2538 -1.5879 -3.7430 22 6 2.4368 0.2948 -4.7500 23 7 2.4954 1.6026 -4.6131 24 14 2.5357 -0.4716 -6.4507 25 1 2.4465 -1.9492 -6.3336 26 1 1.4126 0.0272 -7.2844 27 1 3.8260 -0.1018 -7.0859 28 1 -0.3633 -1.0253 0.0695 29 1 -0.3633 0.5728 0.8531 30 1 -0.3633 0.4524 -0.9227 31 1 1.4519 -1.6710 1.4018 32 1 2.1560 -0.1729 2.0836 33 1 5.6224 -2.8997 0.4130 34 1 6.1743 -1.2076 0.3937 35 1 6.8903 -1.4133 2.7583 36 1 6.3387 -3.1055 2.7784 37 1 9.4939 -1.3340 2.5083 38 1 11.3081 -2.6480 1.1392 39 1 10.2786 -4.3636 -1.4680 40 1 11.2636 -4.9801 -0.1196 41 1 9.6734 -5.7025 -0.4632 42 1 4.2427 -0.5993 -1.0601 43 1 3.6650 -2.2890 -1.0410 44 1 2.2710 1.0108 -2.2831 45 1 2.5903 2.1684 -5.3952 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054716153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:47:30 Heat of formation + Delta-G solvation = 28.113013 kcal Electronic energy + Delta-G solvation = -24741.509446 eV Core-core repulsion = 21180.901778 eV Total energy + Delta-G solvation = -3560.607668 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.10577 -41.13007 -39.03236 -35.86802 -35.53063 -33.97880 -32.83837 -32.39398 -30.91947 -29.13421 -28.51755 -27.00658 -25.89936 -24.80331 -22.91787 -22.03519 -21.38042 -20.59907 -20.03805 -19.07480 -18.24515 -17.67142 -17.37482 -16.69393 -16.58837 -16.30837 -15.77892 -15.35440 -15.07888 -14.90564 -14.63606 -14.55860 -14.25497 -14.12068 -13.82562 -13.58126 -13.42736 -13.28059 -13.06313 -12.96915 -12.89984 -12.85885 -12.81934 -12.25699 -12.18851 -12.09723 -12.02158 -11.67855 -11.48410 -11.40337 -11.04033 -10.87513 -10.18837 -9.64951 -9.47602 -9.05699 -7.94035 -5.23719 0.96046 1.49211 1.50277 1.57484 1.59457 1.69642 1.77845 2.05776 2.57009 3.34250 3.38502 3.60856 3.79677 3.81307 3.90391 3.92042 4.11596 4.15431 4.23311 4.27928 4.36309 4.44326 4.47584 4.56547 4.63123 4.66132 4.70192 4.72023 4.84225 4.90876 4.91378 4.98011 5.04817 5.12501 5.14342 5.18192 5.26999 5.33455 5.49904 5.56300 5.69841 6.19931 6.26904 6.50515 6.77201 7.09873 7.34685 8.06142 8.30377 9.29088 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.010524 B = 0.003583 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.978758 B = 7813.852286 C =10009.030571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 H 0.071 0.929 4 C 0.116 3.884 5 N -0.615 5.615 6 C 0.528 3.472 7 O -0.579 6.579 8 C -0.118 4.118 9 C -0.012 4.012 10 C 0.061 3.939 11 C -0.290 4.290 12 C 0.062 3.938 13 N -0.385 5.385 14 C 0.093 3.907 15 N -0.336 5.336 16 C 0.086 3.914 17 C 0.171 3.829 18 H 0.069 0.931 19 N -0.722 5.722 20 C -0.240 4.240 21 H 0.080 0.920 22 C -0.069 4.069 23 N -0.967 5.967 24 Si 0.967 3.033 25 H -0.265 1.265 26 H -0.295 1.295 27 H -0.296 1.296 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.162 0.838 38 H 0.216 0.784 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.375 0.625 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.936 -10.003 12.228 20.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.123 4.123 3 H 0.090 0.910 4 C -0.007 4.007 5 N -0.347 5.347 6 C 0.318 3.682 7 O -0.460 6.460 8 C -0.159 4.159 9 C -0.052 4.052 10 C -0.104 4.104 11 C -0.319 4.319 12 C -0.084 4.084 13 N -0.167 5.167 14 C -0.047 4.047 15 N -0.160 5.160 16 C -0.040 4.040 17 C 0.061 3.939 18 H 0.087 0.913 19 N -0.361 5.361 20 C -0.371 4.371 21 H 0.098 0.902 22 C -0.261 4.261 23 N -0.617 5.617 24 Si 0.797 3.203 25 H -0.189 1.189 26 H -0.222 1.222 27 H -0.224 1.224 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.180 0.820 38 H 0.232 0.768 39 H 0.099 0.901 40 H 0.139 0.861 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.208 0.792 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.445 -11.180 11.950 20.559 hybrid contribution 0.522 0.913 -0.846 1.350 sum 12.966 -10.268 11.104 19.921 Atomic orbital electron populations 1.21568 0.92270 1.02671 1.02011 1.22528 0.97567 0.98774 0.93465 0.91029 1.22312 0.82538 0.98558 0.97253 1.48596 1.12765 1.65769 1.07605 1.20641 0.85495 0.76308 0.85751 1.90643 1.83855 1.55913 1.15577 1.21481 0.91309 1.03483 0.99605 1.19635 0.87505 1.02361 0.95687 1.22422 0.96986 0.94584 0.96450 1.21766 0.91250 1.07932 1.10996 1.23193 1.01025 0.90224 0.93988 1.48896 1.04378 1.27316 1.36088 1.22176 0.98967 0.91096 0.92454 1.77241 0.95128 1.22834 1.20758 1.22985 1.01721 1.01135 0.78133 1.21421 0.92380 0.93760 0.86379 0.91309 1.42469 1.87110 1.05235 1.01254 1.19652 1.40556 0.92261 0.84672 0.90250 1.25480 1.03543 0.95781 1.01335 1.69812 1.58874 1.03602 1.29416 0.85169 0.76482 0.78188 0.80500 1.18941 1.22249 1.22390 0.91465 0.90883 0.93396 0.90114 0.90591 0.88578 0.88814 0.88841 0.90273 0.82025 0.76773 0.90087 0.86106 0.89651 0.92512 0.91506 0.79205 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.31 71.99 0.67 -2.73 16 2 C -0.10 -3.19 3.26 -9.40 -0.03 -3.22 16 3 H 0.07 2.40 8.01 -2.39 -0.02 2.38 16 4 C 0.12 3.35 6.37 86.86 0.55 3.90 16 5 N -0.61 -19.63 3.33 -811.79 -2.70 -22.33 16 6 C 0.53 17.08 7.85 87.66 0.69 17.77 16 7 O -0.58 -21.28 16.24 -3.03 -0.05 -21.33 16 8 C -0.12 -3.31 4.85 29.85 0.14 -3.17 16 9 C -0.01 -0.32 5.08 29.85 0.15 -0.17 16 10 C 0.06 1.58 6.49 43.10 0.28 1.86 16 11 C -0.29 -6.06 10.72 21.99 0.24 -5.83 16 12 C 0.06 1.03 11.49 83.54 0.96 1.99 16 13 N -0.38 -7.77 4.01 -369.56 -1.48 -9.26 16 14 C 0.09 1.02 11.47 127.77 1.47 2.49 16 15 N -0.34 -9.27 12.54 -47.38 -0.59 -9.87 16 16 C 0.09 2.96 6.24 86.73 0.54 3.50 16 17 C 0.17 6.27 3.05 46.18 0.14 6.41 16 18 H 0.07 2.51 8.02 -2.39 -0.02 2.49 16 19 N -0.72 -34.01 5.18 -317.34 -1.64 -35.65 16 20 C -0.24 -12.53 9.98 84.03 0.84 -11.70 16 21 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 22 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 23 N -0.97 -57.23 13.06 21.65 0.28 -56.94 16 24 Si 0.97 44.63 29.55 68.60 2.03 46.66 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 27 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 28 H 0.07 1.60 8.07 -2.39 -0.02 1.58 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 2.11 7.98 -2.39 -0.02 2.09 16 32 H 0.08 2.18 8.04 -2.39 -0.02 2.16 16 33 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.09 2.29 8.08 -2.39 -0.02 2.27 16 36 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16 37 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 38 H 0.22 1.44 8.06 -2.91 -0.02 1.41 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 2.16 8.03 -2.38 -0.02 2.14 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.38 19.29 7.73 -92.71 -0.72 18.58 16 45 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -70.77 376.34 3.20 -67.57 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.26 Total: 33.36 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 7.11 Total: 7.79 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -6.14 Total: -134.05 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.05 Total: -21.33 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -70.77 3.20 -67.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054716153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.683 kcal (2) G-P(sol) polarization free energy of solvation -70.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds