Wall clock time and date at job start Fri Apr 10 2020 21:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46878 * 2 1 4 4 C 1.50703 * 109.46608 * 240.00393 * 2 1 3 5 5 O 1.21287 * 119.99545 * 239.99954 * 4 2 1 6 6 N 1.34770 * 120.00512 * 59.99762 * 4 2 1 7 7 C 1.46503 * 120.00332 * 179.97438 * 6 4 2 8 8 H 1.08995 * 110.88316 * 37.42693 * 7 6 4 9 9 C 1.54907 * 111.00029 * 273.54803 * 7 6 4 10 10 N 1.47429 * 104.83221 * 204.87693 * 9 7 6 11 11 C 1.36937 * 125.65194 * 204.09530 * 10 9 7 12 12 H 1.07995 * 119.99854 * 163.18750 * 11 10 9 13 13 C 1.38810 * 119.99661 * 343.18607 * 11 10 9 14 14 N 1.31618 * 120.00092 * 331.96840 * 13 11 10 15 15 Si 1.86804 * 119.99876 * 151.97251 * 13 11 10 16 16 H 1.48495 * 109.47307 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.46788 * 299.99920 * 15 13 11 18 18 H 1.48500 * 109.46905 * 59.99697 * 15 13 11 19 19 C 1.47026 * 108.70030 * 24.35677 * 10 9 7 20 20 C 1.54341 * 107.26462 * 358.58550 * 19 10 9 21 21 H 1.09004 * 110.51160 * 96.45147 * 20 19 10 22 22 C 1.52991 * 111.00203 * 219.59998 * 20 19 10 23 23 C 1.50699 * 109.47277 * 120.00513 * 2 1 3 24 24 C 1.35318 * 126.12875 * 85.02107 * 23 2 1 25 25 C 1.39873 * 107.91558 * 179.97438 * 24 23 2 26 26 N 1.30835 * 108.20572 * 0.02562 * 25 24 23 27 27 N 1.34945 * 126.12482 * 264.71272 * 23 2 1 28 28 C 1.46505 * 126.03924 * 0.03134 * 27 23 2 29 29 H 1.08999 * 109.47390 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46572 * 299.99802 * 1 2 3 31 31 H 1.08994 * 109.47422 * 59.99740 * 1 2 3 32 32 H 0.97001 * 119.99902 * 0.02562 * 6 4 2 33 33 H 1.09007 * 110.36796 * 86.04041 * 9 7 6 34 34 H 1.08999 * 110.37205 * 323.71420 * 9 7 6 35 35 H 0.96993 * 119.99981 * 353.96949 * 14 13 11 36 36 H 1.08999 * 109.88316 * 118.13095 * 19 10 9 37 37 H 1.09003 * 109.88326 * 239.29965 * 19 10 9 38 38 H 1.08998 * 109.47464 * 173.78245 * 22 20 19 39 39 H 1.09002 * 109.47558 * 293.78262 * 22 20 19 40 40 H 1.09002 * 109.47177 * 53.78400 * 22 20 19 41 41 H 1.07996 * 126.03715 * 359.94133 * 24 23 2 42 42 H 1.08001 * 125.89518 * 180.02562 * 25 24 23 43 43 H 1.09002 * 109.46692 * 89.99886 * 28 27 23 44 44 H 1.08990 * 109.47251 * 210.00393 * 28 27 23 45 45 H 1.09003 * 109.47140 * 330.00469 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7295 -1.6965 -1.1193 6 7 1.7066 -0.2499 -2.4546 7 6 2.1953 -0.9402 -3.6509 8 1 2.2012 -2.0198 -3.5013 9 6 3.6009 -0.4276 -4.0523 10 7 3.7031 -0.6992 -5.4977 11 6 4.8681 -0.8586 -6.1995 12 1 4.8509 -1.3155 -7.1779 13 6 6.0711 -0.4328 -5.6533 14 7 6.0875 0.5642 -4.7943 15 14 7.6667 -1.2748 -6.1376 16 1 8.8003 -0.6373 -5.4208 17 1 7.5972 -2.7132 -5.7750 18 1 7.8711 -1.1429 -7.6026 19 6 2.3470 -0.7643 -6.0621 20 6 1.3557 -0.5559 -4.8977 21 1 1.0421 0.4867 -4.8450 22 6 0.1428 -1.4775 -5.0386 23 6 2.0324 -0.7105 1.2304 24 6 2.2090 -2.0454 1.3647 25 6 2.6882 -2.2883 2.6561 26 7 2.7950 -1.1405 3.2750 27 7 2.3923 -0.1289 2.3937 28 6 2.3633 1.3066 2.6849 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.1493 0.5390 -2.5436 33 1 4.3730 -0.9722 -3.5085 34 1 3.6837 0.6422 -3.8606 35 1 5.2737 1.0582 -4.6090 36 1 2.2174 0.0209 -6.8070 37 1 2.1814 -1.7408 -6.5172 38 1 -0.4845 -1.3908 -4.1514 39 1 -0.4317 -1.1901 -5.9192 40 1 0.4802 -2.5085 -5.1455 41 1 2.0137 -2.7913 0.6085 42 1 2.9286 -3.2561 3.0707 43 1 1.3914 1.5734 3.1001 44 1 3.1448 1.5470 3.4056 45 1 2.5320 1.8673 1.7655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079716302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:48:35 Heat of formation + Delta-G solvation = 64.547004 kcal Electronic energy + Delta-G solvation = -25892.381907 eV Core-core repulsion = 22333.354136 eV Total energy + Delta-G solvation = -3559.027771 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.38688 -39.67717 -37.79574 -34.43762 -34.07421 -33.04478 -32.71173 -30.36965 -29.16914 -27.83021 -26.75763 -25.53536 -24.93443 -23.53786 -21.39799 -20.95438 -20.26505 -19.97571 -19.14588 -17.56105 -17.04406 -16.64281 -16.02793 -15.54577 -14.88434 -14.64758 -14.44774 -14.16525 -13.71352 -13.69264 -13.39452 -13.34770 -13.07952 -13.01592 -12.82710 -12.55284 -12.46437 -12.35731 -12.24119 -11.77293 -11.55272 -11.50416 -10.86417 -10.71149 -10.65267 -10.57566 -10.45852 -10.09710 -9.96162 -9.61795 -9.54592 -9.24428 -8.68398 -8.38593 -8.37308 -6.93612 -6.08723 -3.13504 1.84801 2.44281 2.77123 2.95382 3.33356 3.52215 3.58830 3.75171 4.22331 4.49331 4.57925 4.62648 4.80764 4.85447 4.95703 5.04060 5.15103 5.17409 5.24610 5.25699 5.31862 5.35626 5.39629 5.63831 5.73514 5.77691 5.81567 5.85690 5.88991 5.97471 6.04112 6.20789 6.28438 6.32438 6.56814 6.59371 6.76441 6.79549 6.96970 7.01322 7.08352 7.67598 7.73949 7.80993 8.39579 8.50242 9.02470 9.82627 10.36488 11.23804 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.004050 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.883311 B = 6911.899695 C = 8108.151559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.047 4.047 3 H 0.104 0.896 4 C 0.519 3.481 5 O -0.516 6.516 6 N -0.713 5.713 7 C 0.131 3.869 8 H 0.094 0.906 9 C 0.141 3.859 10 N -0.601 5.601 11 C -0.340 4.340 12 H 0.066 0.934 13 C -0.023 4.023 14 N -0.914 5.914 15 Si 1.063 2.937 16 H -0.285 1.285 17 H -0.292 1.292 18 H -0.293 1.293 19 C 0.141 3.859 20 C -0.110 4.110 21 H 0.075 0.925 22 C -0.137 4.137 23 C 0.088 3.912 24 C -0.226 4.226 25 C 0.039 3.961 26 N -0.300 5.300 27 N -0.375 5.375 28 C 0.100 3.900 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.395 0.605 33 H 0.055 0.945 34 H 0.026 0.974 35 H 0.267 0.733 36 H 0.025 0.975 37 H 0.030 0.970 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.154 0.846 42 H 0.182 0.818 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.735 1.510 11.063 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.070 4.070 3 H 0.122 0.878 4 C 0.303 3.697 5 O -0.390 6.390 6 N -0.364 5.364 7 C 0.026 3.974 8 H 0.112 0.888 9 C 0.014 3.986 10 N -0.328 5.328 11 C -0.467 4.467 12 H 0.084 0.916 13 C -0.225 4.225 14 N -0.555 5.555 15 Si 0.892 3.108 16 H -0.211 1.211 17 H -0.220 1.220 18 H -0.220 1.220 19 C 0.015 3.985 20 C -0.129 4.129 21 H 0.093 0.907 22 C -0.195 4.195 23 C -0.039 4.039 24 C -0.255 4.255 25 C -0.146 4.146 26 N -0.122 5.122 27 N -0.159 5.159 28 C -0.042 4.042 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.229 0.771 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.172 0.828 42 H 0.199 0.801 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.155 1.441 12.489 18.197 hybrid contribution -2.019 0.262 -1.198 2.362 sum -15.174 1.703 11.291 18.991 Atomic orbital electron populations 1.21749 0.91248 1.03644 1.02814 1.19788 0.97766 0.99867 0.89596 0.87774 1.19962 0.80614 0.84984 0.84123 1.90765 1.36388 1.25812 1.86070 1.45831 1.53408 1.31792 1.05384 1.22396 0.95460 0.97402 0.82108 0.88755 1.21799 0.93160 0.97567 0.86040 1.44429 1.00739 1.85252 1.02418 1.19713 0.84802 1.38676 1.03522 0.91630 1.25751 1.00611 0.96945 0.99149 1.70792 1.30777 1.16296 1.37589 0.83560 0.75989 0.75891 0.75322 1.21075 1.21972 1.21972 1.21380 0.85244 0.98395 0.93495 1.22415 0.95312 0.99469 0.95719 0.90696 1.21731 0.96963 0.99708 1.01057 1.20249 1.01946 0.93595 0.88104 1.21421 1.11063 0.95036 0.97998 1.23860 0.99780 0.96990 0.93938 1.77308 1.22708 0.95796 1.16347 1.48368 1.51452 1.06647 1.09406 1.21815 1.03514 0.75700 1.03174 0.91232 0.91548 0.91116 0.77077 0.92640 0.95678 0.92169 0.95705 0.95251 0.92943 0.92664 0.92374 0.82816 0.80124 0.90927 0.89285 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.07 37.16 0.34 -0.74 16 2 C -0.05 -0.52 2.92 -92.92 -0.27 -0.79 16 3 H 0.10 0.97 6.94 -51.93 -0.36 0.61 16 4 C 0.52 7.81 7.08 -10.99 -0.08 7.74 16 5 O -0.52 -10.08 13.48 5.55 0.07 -10.01 16 6 N -0.71 -9.94 5.12 -51.73 -0.27 -10.21 16 7 C 0.13 2.34 2.76 -65.78 -0.18 2.16 16 8 H 0.09 1.85 7.64 -51.93 -0.40 1.45 16 9 C 0.14 3.35 4.99 -2.53 -0.01 3.33 16 10 N -0.60 -15.41 3.29 -170.06 -0.56 -15.97 16 11 C -0.34 -9.78 10.02 -15.06 -0.15 -9.93 16 12 H 0.07 1.87 7.97 -52.49 -0.42 1.45 16 13 C -0.02 -0.66 5.09 -17.43 -0.09 -0.75 16 14 N -0.91 -28.24 12.93 55.49 0.72 -27.52 16 15 Si 1.06 26.13 30.00 -169.99 -5.10 21.03 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 C 0.14 2.87 6.85 -3.05 -0.02 2.85 16 20 C -0.11 -1.71 3.15 -88.78 -0.28 -1.99 16 21 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 22 C -0.14 -1.70 9.17 37.15 0.34 -1.36 16 23 C 0.09 1.19 5.73 -82.26 -0.47 0.72 16 24 C -0.23 -3.35 9.14 -40.01 -0.37 -3.72 16 25 C 0.04 0.55 12.03 -17.36 -0.21 0.34 16 26 N -0.30 -4.44 12.58 30.63 0.39 -4.05 16 27 N -0.38 -4.90 4.01 -63.88 -0.26 -5.16 16 28 C 0.10 0.84 11.27 59.85 0.67 1.52 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.43 7.56 -51.93 -0.39 0.03 16 32 H 0.40 4.15 7.94 -40.82 -0.32 3.82 16 33 H 0.06 1.55 7.95 -51.93 -0.41 1.13 16 34 H 0.03 0.63 6.81 -51.93 -0.35 0.28 16 35 H 0.27 8.23 6.06 -40.82 -0.25 7.98 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.03 0.59 7.78 -51.93 -0.40 0.19 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 41 H 0.15 2.37 6.80 -52.49 -0.36 2.02 16 42 H 0.18 1.91 8.06 -52.49 -0.42 1.48 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.58 6.97 -51.93 -0.36 0.22 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -36.79 363.56 -7.34 -44.13 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.04 Total: 2.90 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -0.78 Total: -0.63 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: 0.02 Total: -62.91 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -5.10 Total: 21.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.79 -7.34 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079716302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.679 kcal (2) G-P(sol) polarization free energy of solvation -36.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds